ID   JX908740; SV 1; circular; genomic DNA; STD; VRL; 2087 BP.
XX
AC   JX908740;
XX
DT   23-JAN-2013 (Rel. 115, Created)
DT   10-JUL-2013 (Rel. 117, Last updated, Version 3)
XX
DE   Cyanoramphus nest associated circular K DNA virus, complete genome.
XX
KW   .
XX
OS   Cyanoramphus nest associated circular K DNA virus
OC   Viruses; unclassified viruses; unclassified DNA viruses;
OC   unclassified ssDNA viruses.
XX
RN   [1]
RP   1-2087
RX   DOI; 10.1007/s00705-013-1642-6.
RX   PUBMED; 23417396.
RA   Sikorski A., Kearvell J., Elkington S., Dayaram A., Arguello-Astorga G.R.,
RA   Varsani A.;
RT   "Novel ssDNA viruses discovered in yellow-crowned parakeet (Cyanoramphus
RT   auriceps) nesting material";
RL   Arch. Virol. 158(7):1603-1607(2013).
XX
RN   [2]
RP   1-2087
RA   Varsani A., Sikorski A., Kearvell J., Elkington S., Dayaram A.,
RA   Argueello-Astorga G.R.;
RT   ;
RL   Submitted (08-OCT-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private Bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 801ddc38a2f4f829021f58526d2db345.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2087
FT                   /organism="Cyanoramphus nest associated circular K DNA
FT                   virus"
FT                   /host="Cyanoramphus auriceps"
FT                   /isolate="CynNCKV"
FT                   /mol_type="genomic DNA"
FT                   /country="New Zealand"
FT                   /isolation_source="nest"
FT                   /collection_date="01-Feb-2012"
FT                   /db_xref="taxon:1282444"
FT   CDS             169..1029
FT                   /codon_start=1
FT                   /product="putative capsid protein"
FT                   /db_xref="UniProtKB/TrEMBL:L7UVY4"
FT                   /protein_id="AGC55148.1"
FT                   /translation="MPRRTYGGRSVRRRGSVRRRRAPMRRRVHHPRIGRGFSQYVASVF
FT                   KTEEVSAGIVVAGGTSFSAFAPVSIVSMASAAASPANAVGYAFQFRIYDISNPTSGVPS
FT                   DPSFITYAQIYDQFFLTKATLVLRPPLGIRSFPQTVVTNAATGQIPVAQYLPSTSRHLS
FT                   YIERDSSLALTQPLPANGDGTFANRARYGAKQHSAYGPIVRTFWPRYLGAAYNGADYTS
FT                   SEYVIGNRWLTQNRSVAVGGYIVLLFAYNGYGSAGGGPSTGAQPIINYDVEVYWHVKFR
FT                   YTVYG"
FT   CDS             complement(1020..1886)
FT                   /codon_start=1
FT                   /product="replication associated protein"
FT                   /db_xref="GOA:L7UZA8"
FT                   /db_xref="InterPro:IPR000605"
FT                   /db_xref="InterPro:IPR003365"
FT                   /db_xref="UniProtKB/TrEMBL:L7UZA8"
FT                   /protein_id="AGC55149.1"
FT                   /translation="MNHARARSKNWCFTSYDESEPDLARHQEHLTYYIYQPERGVQGRR
FT                   HFQGYAESRERIGVRELQSFIGSRAHCEIAFDPEASRLYCRKESTRDGVTTEWGLFRGK
FT                   KQGSRTDIGTACDTIRRSGLGACIKEHPETFVKYHGGLTIYAAQQFDPRRCTDDPPDVR
FT                   IYYGVTGIGKTRSVYAQYGNDIYTKDDSKWWNGYAAQKCILFDDWVGSEEISPVSLLKI
FT                   CDRYPLQVQTKGGYVPLARTTTVIIFTTTQHENFWYGGTKHEANWCSQRAAWDRRVSER
FT                   RTEWTQP"
XX
SQ   Sequence 2087 BP; 371 A; 554 C; 530 G; 632 T; 0 other;
     tagtattacc tttagaccac ttctggccac tttttcccgc cttttgatgg cgcgcagatg        60
     tttgcatggg tgattactca ggacaggagt acaattggcg tcctgtgtct agtaatcgtt       120
     attatagtag ttcgctgttt cattattccc gttatcttcc ctttataaat gccgcggcga       180
     acttatggcg gacgttccgt ccgtcgtcgt ggttccgttc gtcgtcgacg cgctcctatg       240
     cgccgtcgcg ttcatcatcc tcgtatcggc cgaggttttt cccagtacgt cgccagcgtt       300
     ttcaaaaccg aagaagtttc cgccggtatc gtggtggccg gcggaacaag tttcagcgct       360
     ttcgctcccg tgtccatcgt aagtatggca agcgccgccg cttctcccgc taacgcggtt       420
     ggttacgcgt ttcagttccg tatctatgac atatcaaatc ccacctctgg tgttccttcc       480
     gatccttctt ttattactta tgctcagatc tatgatcagt ttttccttac gaaagcgact       540
     ttggtgctgc gtccgcccct cgggatccgg tcgttcccgc agaccgtggt gaccaacgcc       600
     gccacgggtc agattcctgt cgctcagtat cttccttcta cttctcgtca tctttcttac       660
     attgagcgtg actcaagttt agcccttact cagccgttgc ctgccaacgg tgatggaacg       720
     tttgccaatc gtgctcgata tggtgccaag cagcactccg cttatgggcc tatcgttcgt       780
     accttctggc cacgttatct tggagcagcc tacaatggtg ctgattatac ttcctcggag       840
     tatgttatcg gtaatcgttg gcttacgcag aaccgttcgg tcgcggtagg ggggtacatt       900
     gttcttttgt ttgcgtataa tggttacggt tctgctggtg gtggcccatc gactggtgct       960
     cagcctatta ttaattatga tgtggaggtg tactggcatg tgaagtttcg gtatactgtc      1020
     tatggttgag tccattcagt acgcctctct gaaactcttc ggtcccaggc cgctctctga      1080
     ctacaccaat ttgcctcgtg ttttgttcct ccgtaccaaa agttttcgtg ttgtgtcgtt      1140
     gtgaatatga tcactgttgt tgttcttgcc agcggtacat accccccctt ggtctgtacc      1200
     tggagtgggt accgatcgca tatcttgagt agggatactg gcgatatctc ctcggacccc      1260
     acccagtcgt cgaagaggat gcatttctgt gccgcatagc cgttccacca cttgctatcg      1320
     tccttagtat agatgtcatt gccgtattgt gcgtagacgc ttcttgtctt accaattcca      1380
     gtaacgccgt agtaaattcg cacatctggg ggatcgtcag tgcagcgtcg gggatcaaat      1440
     tgctgagctg cgtagatcgt gagtccccca tggtacttga caaaggtctc aggatgttcc      1500
     ttaatgcagg ctccaagacc acttcgtcgg atggtgtcgc aagctgtacc aatgtctgtg      1560
     cgagacccct gtttctttcc tctgaagagt ccccactctg tggtgacacc atcacgcgtc      1620
     gattccttcc tgcagtagag acgtgaggcc tctggatcga acgcgatctc gcagtgggcc      1680
     ctggatccga tgaaggactg aagctctcgg actccaattc gctctctaga ttcggcatat      1740
     ccctgaaaat gtcttcttcc ttggactcct cgctcaggtt ggtagatgta ataggtgaga      1800
     tgctcctggt gtcgcgcaag atccggctcc gactcgtcat atgacgtgaa acaccaattc      1860
     ttgctcctcg ctcttgcatg gttcataggc tgactttgag ctgtgagaat ctctttccgc      1920
     gcttttttag aagtcccggc gggggtccgg gggatgacgg cccctccccc ggtcggttct      1980
     tgtgcttatg gggccccgcg actagcgggg agcttgtctc tagtaagggt tgcttgtacc      2040
     aagtagtgct tgttgttggt tggcgcgaaa tagtggtcta aagttgc                    2087
//