ID JX908739; SV 1; circular; genomic DNA; STD; VRL; 2308 BP. XX AC JX908739; XX DT 23-JAN-2013 (Rel. 115, Created) DT 10-JUL-2013 (Rel. 117, Last updated, Version 3) XX DE Cyanoramphus nest associated circular X DNA virus, complete genome. XX KW . XX OS Cyanoramphus nest associated circular X DNA virus OC Viruses; unclassified viruses; unclassified DNA viruses; OC unclassified ssDNA viruses. XX RN [1] RP 1-2308 RX DOI; 10.1007/s00705-013-1642-6. RX PUBMED; 23417396. RA Sikorski A., Kearvell J., Elkington S., Dayaram A., Arguello-Astorga G.R., RA Varsani A.; RT "Novel ssDNA viruses discovered in yellow-crowned parakeet (Cyanoramphus RT auriceps) nesting material"; RL Arch. Virol. 158(7):1603-1607(2013). XX RN [2] RP 1-2308 RA Varsani A., Sikorski A., Kearvell J., Elkington S., Dayaram A., RA Argueello-Astorga G.R.; RT ; RL Submitted (08-OCT-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private Bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 5ddcd8f3e48aa5e3c3367cf7824004a0. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2308 FT /organism="Cyanoramphus nest associated circular X DNA FT virus" FT /host="Cyanoramphus auriceps" FT /isolate="CynNCXV" FT /mol_type="genomic DNA" FT /country="New Zealand" FT /isolation_source="nest" FT /collection_date="01-Feb-2012" FT /db_xref="taxon:1282443" FT CDS 76..843 FT /codon_start=1 FT /product="putative capsid protein" FT /db_xref="UniProtKB/TrEMBL:L7UX06" FT /protein_id="AGC55147.1" FT /translation="MGRKRAAPWAGKSYGKRRRVIRRRRWPVPARKRRVPKRRSRRTRK FT TTRDNARVYRQGLFARFIGPTYTLSAAANEDAVYTLNFNYGTLGQNDFAKQMEGYARMF FT EQMKCYKAKLTYWLNDNDELAKPETKWTEVVTSYDPRNYARNMTFQGALSRGNSKRVIL FT KPGRKYTATITPKWGVNLAAADVPAPSDPSVVQVGGRSGYVNMSRVALATDISINSLCM FT VFHGMPAETDFLSCYNTFYCHFKDRVQMNPYKL" FT CDS complement(1230..2225) FT /codon_start=1 FT /product="replication associated protein" FT /db_xref="GOA:L7USS3" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR003365" FT /db_xref="UniProtKB/TrEMBL:L7USS3" FT /protein_id="AGC55146.1" FT /translation="MNFQRKRWCFTVNNYTEDEFNSIKQNFCERVAKFAVMGREIGSGG FT VPHLQGFISLQNKVRLTGIKAIVGQRAHVEPAKGTDQKNLEYCTKSCGVDGATIYGVPA FT GGVTEKGGGTPLSRRALECVRKRSAGTSISELLDDDTLAPAYIVHKRAIEECASDIAGA FT QQFQAERARYATTRWKPFQFNILKICMQEPHPRAVHWFWDAEGNTGKTFIAKYLVLLHD FT AVRFENGKSADIKYAYKGQRIVIFDFSRSQTDHINYEVMESVKNGIVFSPKYESGMKVF FT RTPHMICFANERPDTSNMSMDRWEIHEITTRQARTPTTLPDRDSDTHEIA" XX SQ Sequence 2308 BP; 590 A; 594 C; 550 G; 574 T; 0 other; cagtattacc ccgcactggc tcagctcgct gagccatata tagggcccag ttcgaggacc 60 cactcagaga taataatggg acgcaaacgc gctgcaccgt gggctggtaa gagctatgga 120 aagagacgcc gtgttatcag acgacgtcga tggcctgtcc ctgcacgtaa acgtcgagta 180 ccaaagagac ggtccaggcg tactcgaaag actactcgag ataatgctcg agtgtatagg 240 caggggctgt tcgcgaggtt tatcggcccc acgtacaccc tctccgctgc agcgaacgag 300 gatgcggtct acaccctgaa cttcaactat ggcactctag gtcaaaatga ctttgctaaa 360 cagatggagg ggtatgccag gatgttcgag cagatgaagt gctacaaggc caagctgaca 420 tactggctga atgataacga cgagctggct aagccggaga ccaagtggac cgaggtcgtg 480 acctcgtatg accccaggaa ctatgcacgt aacatgacgt tccaaggtgc cctatctcga 540 ggcaactcta agagggtcat cctgaagcct ggccggaaat acactgccac tatcacccct 600 aagtggggtg ttaatctagc tgctgcagat gttcctgctc catctgatcc gtccgtcgtt 660 caagttggtg gacggtctgg atacgtcaac atgagtcgag tggcacttgc cactgatatc 720 agtatcaact ctctgtgcat ggtgtttcat ggcatgcctg ctgaaacaga cttcttatcg 780 tgctacaaca cgttctactg tcacttcaaa gaccgtgtgc aaatgaaccc gtacaagtta 840 taaaaatcaa ccaataaaaa cgcttgttat aatttattca tgggtcaagt gtttattttt 900 ataatgtatt cataggttaa tgatatgcac aaggtcaacc aatcaaaaag cagagatagc 960 tgcgtcacac caatcagcac acagagatac aaggcacaaa ataatgatat gcacaaaggt 1020 caaccaatca aaaagtactg ataacgctta tcgtgagggt ccctaggttt aggggctcgt 1080 tgacctacgc tcatcgtgag ggtcccacca gcttcggttt agagttagca acagtttcat 1140 cccctagtaa ctgtggccat ctgtgcgtca taagaggagc agtgtccact gccgtaatat 1200 gcaaaccagt cgtactctgg gtctgtatct cacgctatct catgtgtgtc agagtcccta 1260 tctggcagcg tcgtaggggt acgtgcctgc cgtgttgtta tctcgtgtat ctcccaacgg 1320 tccatggaca tattggacgt gtcaggtcgc tcgttagcga agcatatcat atgaggtgtt 1380 ctgaacacct tcatgccgct ctcatacttc gggctgaaaa cgataccgtt tttcacactc 1440 tccatcacct catagttaat atgatctgtc tgtgaacgag agaaatcaaa gatgacgatg 1500 cgctgaccct tgtatgcgta cttgatgtct gcgctctttc cgttctcgaa acgtaccgcg 1560 tcgtgcagca gcaccaggta ctttgcgatg aaggtcttgc cggtgttgcc ctctgcatcc 1620 caaaaccagt gtactgctcg tggatgaggt tcctgcatac aaatctttag tatattaaac 1680 tggaaaggtt tccaacgagt cgtggcgtat ctcgcacgct ctgcctgaaa ctgttgagct 1740 cccgcaatgt cgctcgcgca ctcctcgata gctcttttat gcacgatgta tgcaggcgcc 1800 agggtatcat catccaaaag ttcagaaatg gaggtacccg ctgacctctt gcgtacgcac 1860 tcaagagccc gtctagagag aggagttccc cctcccttct cagtaactcc tcccgcagga 1920 actccataga tggtagcgcc gtccacaccg caggactttg tacaatactc caagtttttc 1980 tgatcagtgc ccttagctgg ttcaacatga gcacgctgtc cgacaatagc tttaattcct 2040 gtgagtcgaa ccttgttctg tagagagatg aacccctgga ggtgtggtac accacccgat 2100 ccaatctctc tgcccataac tgcgaactta gcaacacgct cacagaagtt ctgcttaata 2160 ctattgaatt catcctcggt gtaattgtta actgtaaaac accaccgttt gcgttgaaag 2220 ttcatgatcg aatgaaccaa cgaacgagca ccggtcctat atactgggcc caccggaagt 2280 gagccagcga taagggccag tgcgggtt 2308 //