ID JX889611; SV 1; linear; genomic RNA; STD; VRL; 2569 BP. XX AC JX889611; XX DT 16-JAN-2013 (Rel. 115, Created) DT 16-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Potato mop-top virus isolate BS4T CPRT and CP genes, partial cds. XX KW . XX OS Potato mop-top virus OC Viruses; Riboviria; Virgaviridae; Pomovirus. XX RN [1] RP 1-2569 RA Osorio I., Gutierrez P.A., Marin M.; RT "Genetic variability of RNA 2 and 3 in Colombian isolates of PMTV"; RL Unpublished. XX RN [2] RP 1-2569 RA Osorio I., Gutierrez P.A., Marin M.; RT ; RL Submitted (01-OCT-2012) to the INSDC. RL Escuela de Biociencias, Universidad Nacional de Colombia Sede Medellin, RL Calle 59A No 63 - 20, Medellin, Antioquia, Colombia XX DR MD5; 46cbe48a7dacbfbf5eaf53fbc1e6ee12. XX CC ##Assembly-Data-START## CC Assembly Method :: Bioedi v. 7.1.3 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2569 FT /organism="Potato mop-top virus" FT /host="Solanum tuberosum subsp. Andigena" FT /isolate="BS4T" FT /mol_type="genomic RNA" FT /country="Colombia:Siachoque, Boyaca" FT /collection_date="2010" FT /db_xref="taxon:37128" FT CDS <1..2405 FT /codon_start=3 FT /transl_except=(pos:447..449,aa:OTHER) FT /product="CPRT" FT /note="cp readthrough protein" FT /db_xref="GOA:L7TE29" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:L7TE29" FT /protein_id="AGC30712.1" FT /translation="VRKFISYDQFSAQLRNWREARLNIIEHATSVLSQVSNLGRTHFYS FT RTERFGGSSLVGDKLYVCLNETRMKTALNNIIVALQTVNGEGRARRLGPREASANTGGE FT DSALNVAHQLAEVDDLLTDESFLREAVFTQDKYELVNGLRWAGAXQLTAQAFWFDVNAA FT IDEIDNRLLAAAALRLLPGQANHVDGLVSINYAQLDRALSVVGGNILPQTLEITRDERK FT RQLPEVPEVRVIDGERVTIRNKDEATVISNHGQGLPWLLAFLLLLLSVVVVYSTIYLND FT WLYRLSVVRHGKPGGGAARRLSGVSDWLCSRLRARGALNVNRMRKKQACDPSPTGLRKF FT LTCYNFSYELWDPTGSYDDAQRRIIAEQNSFVEAVRAIDEGDRELAEACLTNVRRILRR FT HLNYRPDYFDIIEAKAVYLVTVLTNAMSGPVVGVDDDERRAVVAAFNPSDCGLPNLDSC FT TLDEIKNFDLSEVVIGEGTNVEQAREYLNLCRNIQCMIETIGTVQFLGVLSSYTGPQYP FT CISQAFAEDKRIRKERLKDKDNITTADIIAYLVSGVMAAYALVAVSKGGITLFKFMKNY FT AGGGGDGPGSSRRIRQLEAALPSLPQPEELTMMERLRRLQSSDNDLALRRNPSDMLSQV FT VRDVVADVDSSDIAEFLNDPARMTEAALENRLTRIMSAEGSPVDVIESGGQELISMQVH FT GESLTVINAGTDSPTVIRSASLSTRHRRSGIEIGSFAVDKVLPYEVEGENDDHGDAGKK FT PTVAQALMIGGSAGKGQGNLGVTNGKELLKVLGSSRSIGKMSGKMAV" FT CDS <1..449 FT /codon_start=3 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:L7TAD3" FT /db_xref="InterPro:IPR001337" FT /db_xref="UniProtKB/TrEMBL:L7TAD3" FT /protein_id="AGC30713.1" FT /translation="VRKFISYDQFSAQLRNWREARLNIIEHATSVLSQVSNLGRTHFYS FT RTERFGGSSLVGDKLYVCLNETRMKTALNNIIVALQTVNGEGRARRLGPREASANTGGE FT DSALNVAHQLAEVDDLLTDESFLREAVFTQDKYELVNGLRWAGA" XX SQ Sequence 2569 BP; 688 A; 462 C; 728 G; 691 T; 0 other; ccgtgaggaa gtttatttct tatgatcaat tctcagctca gttaagaaac tggcgcgaag 60 ctaggttaaa tataattgaa catgccacta gcgtgttgag ccaggtgtct aatttaggta 120 gaactcattt ctacagtaga accgaacgct ttggtggaag ttcacttgtt ggtgataaat 180 tgtacgtatg tctgaatgaa accagaatga aaaccgcgtt gaataatata attgtagcgt 240 tgcagacagt gaacggcgaa gggcgggcaa gacgattagg tccgagagaa gcttccgcga 300 acacaggcgg ggaggatagc gctctgaatg tggcacatca actcgcagag gtggacgatt 360 tattaactga tgaaagtttt ttgagagaag ctgtttttac tcaggacaaa tatgagctcg 420 tgaacgggtt acgctgggct ggtgcatagc aattaaccgc tcaggctttt tggtttgacg 480 tcaacgccgc tatcgacgaa attgataatc gactgctagc ggcggctgcg ttaagactat 540 tgcctgggca ggcaaatcac gtggatggtc tagtgtctat aaattacgca caattggata 600 gagcattgag tgttgttggt gggaatattt tacctcagac gttggagata actcgtgacg 660 aaagaaaaag gcaattacct gaggtccctg aggtcagagt tatcgacggc gagcgtgtca 720 ctattcgtaa caaggatgag gcaacggtca ttagcaatca tggtcaggga cttccctggt 780 tattagcgtt tttactgttg ttgttatctg ttgtggtggt gtattctaca atatacctga 840 acgactggtt gtatcggtta agtgtggtaa ggcatggaaa acctggcggt ggtgcagccc 900 gtaggctgtc gggtgtgtcg gactggttgt gcagtcgctt aagggccaga ggcgctttaa 960 atgtgaatag gatgaggaag aagcaagcat gcgatccgtc gcccactggg ttgcggaagt 1020 tccttacttg ttataacttt tcttatgaac tttgggatcc tactggtagt tatgacgatg 1080 cgcagcggag aattatagcg gaacagaatt cgtttgtgga agccgtgagg gccatagatg 1140 aaggtgacag ggagttggct gaggcgtgtt tgactaatgt tagacggatc ctcaggagac 1200 atcttaatta ccgacctgat tattttgata ttattgaagc gaaggcggta tatttggtga 1260 cagtgctgac aaacgcaatg tcggggccag ttgttggcgt tgacgatgac gagcgaagag 1320 cggtggtggc cgcgtttaat ccgtcagact gtgggttacc gaatttggat agttgcactt 1380 tggacgaaat taagaatttt gatttgtccg aagtggtgat cggtgagggt accaatgttg 1440 aacaagcaag agagtatctt aatctttgta gaaatattca gtgtatgatt gagacaattg 1500 gcaccgtcca atttcttggt gtgttgtcgt cgtatacagg tcctcagtat ccttgtatat 1560 cccaggcttt tgctgaagat aagaggataa gaaaagaaag gctgaaagat aaggacaata 1620 taacgacagc agatattatt gcctatttgg tgagtggggt aatggcagcc tacgctcttg 1680 tggcagtaag taaaggaggg atcacactgt ttaagtttat gaagaattat gcgggtggag 1740 gtggcgatgg gcctggttca agtagaagaa taagacagtt agaggccgct ttgccctccc 1800 ttccgcaacc agaagaactg accatgatgg aacgtttgag gagacttcaa tcttccgata 1860 acgatttagc tttgagaagg aacccgtccg atatgcttag tcaggtcgta cgtgacgttg 1920 tagccgatgt agactccagc gatatcgctg agtttttgaa tgatcctgct aggatgaccg 1980 aagcggctct ggagaaccga ttgaccagaa taatgagtgc tgaaggttca ccggtggatg 2040 taattgagtc agggggccag gaacttattt ccatgcaagt gcatggagaa agtctaaccg 2100 tcataaatgc cggcaccgac tctcccacag tgatcagatc cgcgtccttg tcgacgcggc 2160 accgtagatc tggtatagaa atcggttctt ttgcagtgga taaagtgctg ccttacgagg 2220 tggaaggcga aaacgacgat cacggtgacg ccggtaagaa acccactgtc gcccaagctt 2280 tgatgattgg gggtagtgcg ggtaaaggac agggtaatct gggtgttact aatggtaaag 2340 aactcttgaa ggtattaggt agctctcgat ctatagggaa gatgtcgggt aagatggctg 2400 tttaaaccga gtgcgtgtga caggtttacc tctctaaaag tcacaccgtg gatactacga 2460 caagtatcag tgcttacagg acttatgtct gtggttcact taaatcgaac cattggagca 2520 atccaacgtt aatactacgt taagtattag tgcttacagg gttaaaccg 2569 //