ID JX879088; SV 1; linear; genomic RNA; STD; VRL; 4274 BP. XX AC JX879088; XX DT 10-JAN-2013 (Rel. 115, Created) DT 10-JAN-2013 (Rel. 115, Last updated, Version 1) XX DE Melon necrotic spot virus strain Hyd, complete genome. XX KW . XX OS Melon necrotic spot virus OC Viruses; Riboviria; Tombusviridae; Procedovirinae; Gammacarmovirus. XX RN [1] RP 1-4274 RA Nagateja N., Gopinath K.; RT "A novel virus infecting Cucumis melo is a member of carmovirus from RT India"; RL Unpublished. XX RN [2] RP 1-4274 RA Nagateja N., Gopinath K.; RT ; RL Submitted (29-SEP-2012) to the INSDC. RL Plant Sciences, HCU, Gachibowli, Hyderabad, Andhrapradesh 500046, India XX DR MD5; a13ad7a9b9708afeb80bec447e8e4219. XX FH Key Location/Qualifiers FH FT source 1..4274 FT /organism="Melon necrotic spot virus" FT /host="Cucumis melo" FT /lab_host="Nicotiana benthamiana" FT /strain="Hyd" FT /serotype="Japan" FT /mol_type="genomic RNA" FT /country="India" FT /collection_date="2009" FT /db_xref="taxon:11987" FT 5'UTR 1..98 FT CDS 99..2495 FT /codon_start=1 FT /transl_except=(pos:924..926,aa:OTHER) FT /product="p89" FT /note="putative RNA-dependent RNA polymerase" FT /db_xref="GOA:L7RKL7" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:L7RKL7" FT /protein_id="AGC04692.1" FT /translation="MATAMNTMGLTVLNLAPVQSSHIITRCFAARSVDSTLPSKDICTR FT LSNSLCENVKSDIASIVKVGLGAAVCYGAYRLAKNFWYNQRKHSKGEIDELGQAVLKCI FT EDVANGNDEAIEEETTETIMVGDVDIGVVREIPAEVRLKRRHRKAPFLAKVTNMAKNHF FT GGCPDPTKSNVMAVSKFVYDTCKEHNCLPHQTRQIISIVVPLVLSPDEYDITSRALLNS FT DILCENRAKRESASSISGWLVNLIAHPLSATAWRRAMDNLCGLPDWKAFRLVNXGCLEE FT LAGFCTEVRRGQHPDMTEHSSGRPVKVRRLFCLGGVGTSVRFGVHNNSLQNLRRGLLER FT VFYVENENKELEPAPKPLDGAFGSLLRFRRKLHSIVGTHSRVSPNQFVEFYSGRKKTIY FT QQACESLEGLAVQKRDSYLKTFVKAEKLNITRKPDPAPRVIQPRNVRYNVEVGRFLRRF FT EHYLYRGIDTIWGGPTVIKGYTVEQIGEIVSDAWFSFRSPVAIGFDMKRFDQHVSVDAL FT KWEHSVYLDAFCNDEYLKELLSWQLENRGVGYASDGYIKYKVDGCRMSGDMNTAMGNCL FT LSCAIVYQFFKEYGIKGRLINNGDDCVVFVEKECAAAVKAGIVKHWRKFGFQCELECDA FT NIIEQVEFCQMRPVKVNGKYIMVRNPLVSLSKDSYSIGPWNSINHAKKWVNAVGQCGIS FT LTGGVPICQSYYQMFIRNTSGVNSNSILRDVSFASGFRELAKMGKRVATDISEESRFSF FT YLAFGITPDSQRAIESDYDAHNFDWGFWPQGKPKIEPISWMLNEL" FT CDS 99..926 FT /codon_start=1 FT /product="p28" FT /db_xref="UniProtKB/TrEMBL:L7RGL4" FT /protein_id="AGC04688.1" FT /translation="MATAMNTMGLTVLNLAPVQSSHIITRCFAARSVDSTLPSKDICTR FT LSNSLCENVKSDIASIVKVGLGAAVCYGAYRLAKNFWYNQRKHSKGEIDELGQAVLKCI FT EDVANGNDEAIEEETTETIMVGDVDIGVVREIPAEVRLKRRHRKAPFLAKVTNMAKNHF FT GGCPDPTKSNVMAVSKFVYDTCKEHNCLPHQTRQIISIVVPLVLSPDEYDITSRALLNS FT DILCENRAKRESASSISGWLVNLIAHPLSATAWRRAMDNLCGLPDWKAFRLVN" FT gene 2474..2677 FT /gene="MP-1" FT CDS 2474..2677 FT /codon_start=1 FT /gene="MP-1" FT /product="p7A" FT /note="movement protein 1" FT /db_xref="GOA:L7RGF7" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProtKB/TrEMBL:L7RGF7" FT /protein_id="AGC04689.1" FT /translation="MDAQRTVDQTNSRGRSQEKSNSDKVGNSKTSMGRKIANDAISESK FT QGVMGASVYIADQIKVKINFNF" FT gene 2680..2868 FT /gene="MP-2" FT CDS 2680..2868 FT /codon_start=1 FT /gene="MP-2" FT /product="p7B" FT /note="movement protein 2" FT /db_xref="GOA:L7RH17" FT /db_xref="InterPro:IPR009575" FT /db_xref="UniProtKB/TrEMBL:L7RH17" FT /protein_id="AGC04690.1" FT /translation="MGCGCCSQYCPGDYSGVVAILFLLLILFVITILGQPTQHTYTTYD FT NSCIKTQYVGISTNGDG" FT gene 2855..4030 FT /gene="CP" FT CDS 2855..4030 FT /codon_start=1 FT /gene="CP" FT /product="p42" FT /note="coat protein" FT /db_xref="GOA:L7RFV7" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:L7RFV7" FT /protein_id="AGC04691.1" FT /translation="MAMVKRANNSNNNKAIIPYGPILKSLGPVAASKAGEYAPVVINGV FT TKLTKSARRLLGKGNENITFTSGAYPGSVSAPVAISRRIAGMQPRFKQVAGSIHITHRE FT LVTSILPSSDLLVNNGVTTVGAYRINPGNATLFTWLPTLGLNFDMYKFTRIRFHYVPTC FT ATTSTGRVALVWDKDSQDPLPVDRSALSAYTHSAESAPWADNMLVIPCDNIKRFINDGN FT ATDKKLVDFGQLFFATYSSSGGVPLGDVYVEYGVEFTEAQPAASQVQYFERTLSAGLTG FT LFTRGANYISDADVKTVNNSSCEINVNVPGTFLFTLVINASTVTNISIGGNSTSRGPVL FT GSGASTAIFTGVIASSGVPSSPASITVNGLVGLLRLRCTITRATSEVAYLV" FT 3'UTR 4031..4274 XX SQ Sequence 4274 BP; 1104 A; 922 C; 1053 G; 1195 T; 0 other; gggatagcta gccactattc ccgtgctctc tgtgttcgag atcccgtgtc ggcaggttac 60 tttgatcgta atatcggcgg acctaaacgt aacagcgtat ggctactgca atgaatacta 120 tggggttaac tgtgcttaac ttagctcccg tgcaatcttc tcatataata actagatgct 180 ttgctgcgag aagtgttgat agtactctac ctagtaaaga tatatgtact aggttgtcaa 240 atagtttatg tgagaatgtc aaatctgata tcgcttctat tgttaaagtc ggacttggag 300 ccgctgtttg ttatggtgct tataggttgg caaagaactt ttggtacaac cagcggaaac 360 actctaaggg tgagattgac gaattagggc aggccgtttt gaaatgcatt gaagatgtgg 420 caaacggcaa cgatgaggcg attgaggagg agaccacgga aactatcatg gttggtgatg 480 ttgatatcgg ggtagtgcgt gagatccccg ccgaagtcag attgaagagg agacatcgga 540 aagctccctt cctggctaag gtgacaaata tggccaaaaa tcattttggc ggttgtcccg 600 atcctacaaa atcaaacgtg atggctgtga gcaaatttgt ctatgacacc tgtaaagaac 660 ataattgcct tccccatcag accagacaaa ttattagtat cgttgtccct ctcgtactca 720 gccctgatga gtacgatatc acgagtcggg ctcttttgaa ttctgatatt ctatgcgaga 780 acagagctaa gcgtgagagt gcgtcctcca tcagtggatg gttggtcaat ctaattgccc 840 atccattgtc cgccactgct tggaggcgtg ccatggacaa cctgtgtggt cttcctgact 900 ggaaggcctt caggcttgtc aactaggggt gcctagagga gctcgcggga ttctgcactg 960 aagtgcggag agggcaacat cccgacatga ccgagcattc ctcaggacgc cctgtcaaag 1020 tacgtagatt attttgctta gggggagttg gaactagcgt acggttcggt gtccacaaca 1080 attctttgca gaaccttcgg agaggtttgt tagaacgtgt gttctacgtg gaaaatgaaa 1140 acaaagaatt ggaacctgcc cctaagcccc tggatggtgc ttttggaagc cttttgcggt 1200 tcaggcgtaa gttgcactca attgtcggta ctcattcccg agtatctccc aaccaatttg 1260 tggagttcta ctcaggcagg aagaaaacaa tataccagca agcttgcgaa tcgcttgaag 1320 gactggctgt ccagaagaga gattcctatc tcaagacctt tgttaaggct gagaaattga 1380 acatcaccag gaaacctgac cctgctccga gggtgatcca accgaggaac gttcgttaca 1440 acgttgaggt tggtcggttt ttgagaaggt ttgagcatta cctctataga ggcattgata 1500 caatctgggg tggtcccacc gttattaagg gttacactgt agaacaaatt ggcgagatcg 1560 tttctgatgc ctggttttct ttccgaagcc cagtagccat cggtttcgat atgaaaaggt 1620 ttgatcaaca cgtcagtgtg gatgcactta agtgggaaca ctccgtctat ttggatgctt 1680 tttgtaatga tgaatatctg aaagaattac tatcttggca actggaaaac cgtggtgttg 1740 ggtatgctag tgatgggtac attaaatata aagttgatgg ctgcagaatg agcggagata 1800 tgaatactgc tatgggaaat tgtttgttat cgtgtgccat tgtgtaccag ttctttaaag 1860 aatatgggat taagggtaga ctcataaata atggagatga ttgcgtcgta ttcgtcgaaa 1920 aggaatgtgc tgcggcggtt aaagccggca ttgtaaagca ctggagaaag ttcgggtttc 1980 aatgtgaact cgagtgcgac gccaatataa tcgaacaagt tgagttttgc caaatgagac 2040 ccgttaaagt taatggcaag tacatcatgg tgcgcaatcc cttggtaagc ttatctaaag 2100 attcttactc catcggtccc tggaattcca tcaaccatgc caagaaatgg gttaatgcag 2160 ttggccagtg cggcatctcc ctcactggcg gtgttcctat ctgccaatca tattaccaga 2220 tgttcatccg caatacatca ggcgtgaatt caaatagtat cctccgcgat gttagttttg 2280 caagtggatt ccgggaactc gcgaaaatgg gcaaacgtgt tgcaactgac atatctgagg 2340 agtcaaggtt tagcttttat ctcgcatttg gcattactcc agactcgcaa cgtgccattg 2400 aaagtgacta tgatgctcat aactttgatt ggggcttctg gccccaggga aaaccaaaaa 2460 tcgaaccaat ttcatggatg ctcaacgaac tgtagatcaa acgaactctc ggggaagatc 2520 gcaagagaaa tcgaatagtg acaaggtggg aaactcaaag acttcaatgg ggcggaagat 2580 agccaatgat gctatctcgg agtctaaaca aggtgttatg ggtgcttctg tttatatcgc 2640 agatcagatc aaagttaaaa ttaattttaa cttctgataa tggggtgtgg atgttgctct 2700 cagtattgcc ccggggatta ctctggagtc gttgcaatac tttttctcct gttgatactc 2760 tttgtcatta ccatcttagg tcagccaact caacacacat acactactta cgataactct 2820 tgcattaaaa cacaatacgt aggaatctca acgaatggcg atggttaaac gcgcaaacaa 2880 tagtaataat aacaaggcga ttattcccta tggaccaatt ttgaagtctc taggccctgt 2940 tgctgccagc aaagctgggg aatatgctcc tgtggtcatt aatggtgtca ctaaactcac 3000 caagtccgct cgtcggctgt tgggtaaagg gaatgaaaac atcactttta ctagtggtgc 3060 ctatcccgga tcagttagtg ctccagttgc gatcagtagg agaattgctg gtatgcagcc 3120 tagattcaag caagtggctg ggtcaataca catcactcat agagaactag tgacttctat 3180 cctccctagt agtgacctac tggttaacaa tggtgttacc accgttggtg cctatcgcat 3240 caaccctggc aatgccaccc tgttcacctg gttaccaaca ttagggttaa actttgatat 3300 gtacaaattt accagaatta gatttcacta tgttcccacc tgcgcaacta ctagtacagg 3360 gcgggtcgct ctcgtctggg ataaggattc tcaggatcct ctcccggtag atcgatctgc 3420 actttcagca tacacgcata gcgcagagag tgctccttgg gcagataaca tgctggtcat 3480 cccatgcgac aacattaaaa gattcatcaa tgatggaaat gctactgata agaagttggt 3540 tgactttggt caactcttct tcgctactta ctcaagtagt ggtggtgttc ctcttggtga 3600 cgtttacgtt gagtatggtg ttgaattcac tgaagctcag ccggcagcgt ctcaggtgca 3660 atacttcgag agaacgttgt ccgctgggtt aaccggcctg ttcactaggg gcgctaacta 3720 tatctctgat gctgatgtta aaactgtcaa caattcgtct tgtgaaatta acgtgaatgt 3780 tcctggaaca ttcctgttca ccctcgtcat taatgctagc actgttacta acatttccat 3840 tgggggcaac tctacctctc gcggtcccgt tctaggttcc ggtgcttcta ccgctatctt 3900 tactggggtt atcgcttctt ccggggtacc gagttctcca gcctccataa cggttaatgg 3960 tcttgttggc ctgctcaggc tacgctgcac cattacccgc gcaaccagtg aggtagctta 4020 ccttgtatag tccttcacgt tcttgggttc cgtgttccag gccctccagc ccaactcatt 4080 ctatctgttt gtcatggtgg tacgacccct tcctcggcgg gaagggactg cgtaggatgg 4140 caagttgctc tagatgaggt aagtaggtcc tgagatcggt ttctgggaaa gctctttggg 4200 gaaaacacag caatgtgggg cgcccgtgga gagtatgtca tgtttgaatt gaggccactt 4260 aagtggcccc gcca 4274 //