ID   JX871388; SV 1; circular; genomic DNA; STD; VRL; 2642 BP.
XX
AC   JX871388;
XX
DT   04-FEB-2013 (Rel. 115, Created)
DT   04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida mottle Alagoas virus isolate BR:Mar3:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Sida mottle Alagoas virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2642
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   "Further molecular characterization of weed-associated begomoviruses in
RT   Brazil with an emphasis on Sida spp.";
RL   Unpublished.
XX
RN   [2]
RP   1-2642
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   ;
RL   Submitted (26-SEP-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
DR   MD5; bbab622e6c4429c2324876ef8282d729.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman6.0 v. 6.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2642
FT                   /organism="Sida mottle Alagoas virus"
FT                   /segment="DNA-A"
FT                   /host="Sida sp."
FT                   /isolate="BR:Mar3:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1266995"
FT   CDS             224..979
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7YFL6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:L7YFL6"
FT                   /protein_id="AGD98642.1"
FT                   /translation="MPKRDAPWRLMAGTSKVSRSSNLSPRSGIGPKFNKASEWVNRPMY
FT                   RKPRIYRALRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYQVLHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSIMN"
FT   CDS             complement(976..1374)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:L7YDB9"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L7YDB9"
FT                   /protein_id="AGD98643.1"
FT                   /translation="MDSRTGELITAPQAENGVYIWEITNPLYFKIIRVEDPPYTRTRVY
FT                   HIQIRFNHNLRRALDLHKAFLNFQVWTTSMTASGTTYLARFRHLVMMYLDQLGVIGLNN
FT                   VIRAVRFATDRSYVNHVLENHSIKFNFY"
FT   CDS             complement(1121..1510)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:L7Y860"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L7Y860"
FT                   /protein_id="AGD98644.1"
FT                   /translation="MLNSSSSTPPSIKPRHRIAKKRAVRRRRVDLDCGCSIYQHLNCTG
FT                   HGFTHRGTHHCTSSREWRLYLGNNKSPLFQDNQGRGSTVHQDKSVPHPDQVQPQPEESI
FT                   GSPQGIPQFPSLDDINDSFWDDLFS"
FT   CDS             complement(1422..2507)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:L7YE51"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L7YE51"
FT                   /protein_id="AGD98645.1"
FT                   /translation="MPRKGSFCIKAKNYFLTYPRCSLTKEEALSQILNLKTPVNKKFIK
FT                   ICRELHDDGEPHLHVLLQFEGKFQCTNNRFFDMVSPTRSVHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTMEWGEFQVDGRSARGGCQTSNDAAAEALNAATKEAALQIIKEKLPEKYLFQFH
FT                   NLNSNLDRIFSKAPEPWAPPFHLSSFTNVPDEMQEWTDDYFGRGAAARPERPISLIVEG
FT                   DSRTGKTMWARALGPHNYLSGHLDFNPRIYSDDAEYNVIDDVTPHYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFIFLN
FT                   SPLYQTTTQDCQEESSQATTS"
FT   CDS             complement(2093..2350)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L7YCC2"
FT                   /protein_id="AGD98646.1"
FT                   /translation="MGSLISTSSSSSKGNSNARITDSSTWCPQQGQYISIRTFRELSHH
FT                   PTSSPTSRKTETPWNGENSRSTAEVLEEVAKRLTTLQQKH"
XX
SQ   Sequence 2642 BP; 638 A; 585 C; 648 G; 771 T; 0 other;
     accggatggc cgcgcgattt tccccccccc acgtggcgct ctcgtggccg cgcgattccc        60
     tcccccgcgc gccccctgct ttaatttgat ttaaagaaat taactttcgt ctgagccaat       120
     catattggcc ctgagtagtc tagataaccg tgaacaactt ggtcaccaag ttgtctgact       180
     cctataaaat taaagcatga atgacgtcag tctttaattc agaatgccta agcgggatgc       240
     cccatggcgt ctgatggcgg gaacctcaaa ggttagccgc tcttctaacc tttctcctcg       300
     ttcaggtatt gggcccaagt tcaacaaggc ctctgaatgg gtcaacaggc ccatgtacag       360
     gaagcccagg atatacagag cgttaaggac gcccgatgtt cctagaggct gtgaagggcc       420
     ctgtaaggtc cagtcgtacg agcagcgaca tgacatctct catgtcggca aggtgatgtg       480
     tatatctgat gtgacacgcg gtaacggtat tactcaccgt gtcggtaagc gtttctgtgt       540
     taagtctgtg tatattttag gtaagatatg gatggacgag aatatcaagc tgaagaacca       600
     cacgaacagt gttatgttct ggttggtcag ggatcgtaga ccgtatggta cacccatgga       660
     ctttgggcag gtgttcaaca tgttcgacaa cgagcccagc actgcgaccg tcaagaacga       720
     tctccgcgat cgttaccagg tcctgcacaa gttctatgcc aaggttactg gtggtcaata       780
     tgccagcaac gaacaggctc tggtcaagag gttctggaag gtaaacaatt atgtggtgta       840
     caatcaccag gaggctggca aatacgagaa tcacacggag aacgctttat tactgtatat       900
     ggcatgtact catgcctcga atcctgtgta tgcgacgctt aagattcgga tctattttta       960
     cgattcgatc atgaattaat aaaagttgaa ttttattgaa tgattttcca gtacatgatt      1020
     tacatatgaa cggtctgttg cgaaacgaac agccctaatt acattattaa gaccaataac      1080
     tcctaattga tctaagtaca tcatgactag atgtctaaat ctagctaaat aagtcgtccc      1140
     agaagctgtc attgatgtcg tccagacttg gaaattgagg aatgccttgt ggagatccaa      1200
     tgctctcctc aggttgtggt tgaacctgat ctggatgtgg tacactcttg tcctggtgta      1260
     cggtggatcc tctaccctga ttatcttgaa atagagggga tttgttattt cccagatata      1320
     gacgccattc tctgcttgag gtgcagtgat gagttcccct gtgcgtgaat ccatgccccg      1380
     tgcagttgag atgctggtat atggagcagc cgcagtcaag atcaactcgt cgtcgcctga      1440
     ctgctctctt cttggcaatc ctgtgtcgtg gtttgataga ggggggagtt gaggaagatg      1500
     aatttagcat tgtggagtgt ccaagccttt agtgatgcat tttcctcttt gtcgaggaaa      1560
     tctttatagc tagccccctc tccaggattg cagagcacga ttgatgggat acccccttta      1620
     atttgaacag gctttccgta tttgcaattt gactgccagt ctttttgagc accaatcagt      1680
     tccttccagt gctttaactt tagataatgc ggggtgacat catcgatgac gttgtactca      1740
     gcgtcgtctg agtaaattct tggattgaag tccaggtgtc cactcagata attatgtggg      1800
     cctaacgcac gagcccacat tgtcttcccc gttcgagagt caccctctac aattaaactt      1860
     atgggtcttt ctggccgcgc agcggcacct ctcccaaaat aatcgtcagt ccactcctgc      1920
     atctcgtcgg gaacgttagt gaaggaggag aggtgaaacg gaggagccca tggttccgga      1980
     gccttggaaa aaatcctatc taggtttgaa ttaagattat ggaactgaaa taagtatttt      2040
     tcagggagtt tttcctttat tatttgaaga gcagcttctt ttgtagctgc gtttaatgct      2100
     tctgctgcag cgtcgttaga cgtttggcaa cctcctctag cacttctgcc gtcgacctgg      2160
     aattctcccc attccatggt gtctccgtct ttctcgacgt aggacttgac gtcggatgat      2220
     gacttagctc cctgaatgtt cggatggaaa tgtactgacc ttgttgggga caccatgtcg      2280
     aagaatctgt tattcgtgca ttggaatttc ccttcgaact ggaggaggac gtggagatga      2340
     ggctccccat cgtcgtgaag ctctctgcag attttgatga atttcttgtt aactggtgtt      2400
     tttaggttga ggatttggga aagtgcttct tctttggtta aagaacaccg tggataggtg      2460
     aggaaatagt ttttggcttt tatgcagaaa gaacccttcc gtggcatttt tgtaaataga      2520
     gcatgtaccc ccgattggct tccgctctaa aactcttatg aattgggggt actgggggtt      2580
     catttatact ataacttcct aatgggcata gggggcacgt ggcggccatc cgttataata      2640
     tt                                                                     2642
//