ID   JX871385; SV 1; circular; genomic DNA; STD; VRL; 2649 BP.
XX
AC   JX871385;
XX
DT   04-FEB-2013 (Rel. 115, Created)
DT   04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida mottle Alagoas virus isolate BR:Vsa2:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Sida mottle Alagoas virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2649
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   "Further molecular characterization of weed-associated begomoviruses in
RT   Brazil with an emphasis on Sida spp.";
RL   Unpublished.
XX
RN   [2]
RP   1-2649
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   ;
RL   Submitted (26-SEP-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
DR   MD5; 3f04f3d069a1f27a0e5641563945b655.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman6.0 v. 6.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2649
FT                   /organism="Sida mottle Alagoas virus"
FT                   /segment="DNA-A"
FT                   /host="Sida urens"
FT                   /isolate="BR:Vsa2:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1266995"
FT   CDS             229..984
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7YFK9"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:L7YFK9"
FT                   /protein_id="AGD98627.1"
FT                   /translation="MPKRDAPWRLMAGTSKVSRSSNFSPRSGIGPKINKASEWVNRPMY
FT                   RKPRIYRALRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSIMN"
FT   CDS             complement(981..1379)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:L7YDB5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L7YDB5"
FT                   /protein_id="AGD98628.1"
FT                   /translation="MDSRTGELITAPQAENGVYIWEITNPLYFKIIRVEDPPYTRTRVY
FT                   HIQIRFNHNLRRALDLHKAFLNFQVWTTSMTASGTTYLARFRHLVMMYLDQLGVIGLNN
FT                   VIRAVRFATDRSYVNQVLENHSIKFNFY"
FT   CDS             complement(1126..1515)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:L7Y849"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L7Y849"
FT                   /protein_id="AGD98629.1"
FT                   /translation="MLNSSSSTPPSIKPRHRIAKKRAVRRRRVDLDCGCSIYQHLNCTG
FT                   HGFTHRGTHHCTSGREWRLYLGNNKSPLFQDNQGRGSTVHQDKSVPHPDKVQPQPEESI
FT                   GSPQGIPQLPSLDDINDSFWDDLFS"
FT   CDS             complement(1427..2512)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:L7YE48"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L7YE48"
FT                   /protein_id="AGD98630.1"
FT                   /translation="MPRKGSFCIKAKNYFLTFPRCSLTKEEALSQILNLKTPVNKKFIK
FT                   ICRELHDDGEPHLHVLLQFEGKFQCTNNRFFDMVSPTRSAHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTMEWGEFQVDGRSARGGCQTSNDAAAEALNAATKEAALQIIKEKIPEKYLFQFH
FT                   NLNSNLDRIFSKAPEPWAPPSLLCSFTNVPDEMQEWADDYFGRGAAARPERPISLIVEG
FT                   DSRTGKTMWARALGPHNYLSGHLDFNPRIYSDDAEYNVIDDVTPHYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFIFLN
FT                   SPLYQTTTQDCQEESSQATTS"
FT   CDS             complement(2098..2355)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L7YCB1"
FT                   /protein_id="AGD98631.1"
FT                   /translation="MGSLISTSSSSSKGNSNARITDSSTWCPQQGQHISIRTFRELNHR
FT                   PTSSPTSRKTETPWNGENSRSTAEVLEEVAKRLTTLQQRH"
XX
SQ   Sequence 2649 BP; 647 A; 583 C; 647 G; 772 T; 0 other;
     accggatggc cgcgcgattt ttcccccccc ccccacgtgg cgctctcgtg gccgcgcgat        60
     tccctacctc cgcgcgctcc ctgctttaat ttgaattaaa gaaaataact ttcgtctgag       120
     ccaatcatat tggccctgag aagcctagat aactgtgaca aacttggtca ctaagtttgt       180
     ggagtcctat aaaattaaag cacgaatgac gtcagtcttt aattcagaat gcctaagcgg       240
     gatgccccgt ggcgcctgat ggcgggaacc tcaaaggtca gccgctcttc taacttttct       300
     cctcgttcag gtattgggcc aaaaatcaac aaggcatctg aatgggtcaa caggcccatg       360
     tacaggaagc ccaggatata cagagcgtta aggacgcccg atgttcctag aggctgtgaa       420
     gggccctgta aggtccagtc gtacgagcag cgacatgaca tctctcatgt cggcaaggtg       480
     atgtgtatat ctgatgtgac acgcggtaac ggtattactc accgtgtcgg taagcgtttt       540
     tgtgttaagt ctgtgtatat tttaggtaag atatggatgg acgagaatat caagctcaag       600
     aaccacacga acagtgttat gttctggttg gtcagggatc gtagaccgta tggtacaccc       660
     atggactttg gccaggtgtt taacatgttc gacaacgagc ccagcactgc gaccgtcaag       720
     aacgatctcc gagatcgtta ccaggtcatg cacaagttct atgccaaggt tactggtggt       780
     caatatgcca gcaacgaaca ggctctggtc aagaggttct ggaaggttaa caattatgtg       840
     gtgtacaatc accaagaggc tggcaagtac gagaatcaca cggagaacgc tttattactg       900
     tatatggcat gtactcatgc ctcgaaccct gtgtatgcta cgcttaagat tcggatctat       960
     ttttacgatt cgatcatgaa ttaataaaag ttgaatttta ttgaatgatt ttccagtacc      1020
     tgatttacat atgaacggtc tgttgcgaaa cgaacagccc taataacatt attaagacca      1080
     ataactccta attgatctaa gtacatcatg actagatgtc taaatctagc taaataagtc      1140
     gtcccagaag ctgtcattga tgtcgtccag acttggaagt tgaggaatgc cttgtggaga      1200
     tccaatgctc tcctcaggtt gtggttgaac cttatctgga tgtggtacac tcttgtcctg      1260
     gtgtacggtg gatcctctac cctgattatc ttgaaataga ggggatttgt tatttcccag      1320
     atatagacgc cattctctgc ctgaggtgca gtgatgagtt cccctgtgcg tgaatccatg      1380
     tcctgtgcag ttgagatgct ggtatatgga gcagccgcag tcaagatcaa ctcgtcgtcg      1440
     cctgactgct ctcttcttgg caatcctgtg tcgtggtttg atagaggggg gagttgagga      1500
     agatgaattt agcattgtgg agtgtccaag cctttagtga tgcattttcc tctttgtcga      1560
     ggaaatcttt atagctagcc ccctctccag gattgcagag cacgattgat gggatacccc      1620
     ctttaatttg aacaggcttt ccgtatttgc aatttgactg ccagtctttt tgagcaccaa      1680
     tcagttcctt ccagtgcttt aactttagat aatgcggggt gacatcatcg atgacgttgt      1740
     actcagcgtc gtctgagtaa attcttggat tgaagtccag gtgtccactc agataattat      1800
     gtgggcctaa cgcacgagcc cacattgtct tccccgttcg agagtcaccc tctacaatta      1860
     aacttatggg tctttctggc cgcgcagcgg cacctctccc aaaataatcg tcagcccact      1920
     cctgcatctc gtcgggaacg ttagtgaagg agcagagaag tgacggagga gcccatggtt      1980
     ccggagcctt ggaaaaaatc ctatctaggt ttgaattaag attatggaac tgaaataagt      2040
     atttttcagg gattttttcc tttattattt gaagagcagc ttcttttgta gctgcgttta      2100
     atgcctctgc tgcagcgtcg ttagacgttt ggcaacctcc tctagcactt ctgccgtcga      2160
     cctggaattc tccccattcc atggtgtctc cgtctttctc gacgtaggac ttgacgtcgg      2220
     acgatgattt agctccctga atgttcggat ggaaatgtgc tgaccttgtt ggggacacca      2280
     tgtcgaagaa tctgttattc gtgcattgga atttcccttc gaactggagg aggacgtgga      2340
     gatgaggctc cccatcgtcg tgaagctctc tgcagatttt gatgaatttc ttgttaactg      2400
     gtgtttttag gttgaggatt tgggaaagtg cttcttcttt ggttaaagaa caccgtggaa      2460
     atgtgaggaa atagtttttg gcttttatgc agaaagaacc cttccgtggc atttttgtaa      2520
     ataaggcagt gtacccccga ttggtttcgg ctctaaaact tatatgaatt gggggtactg      2580
     ggggttcatt tatactataa cttcctaatg ggcatagggg gcaacgtggc ggccatccgc      2640
     tataatatt                                                              2649
//