ID JX871384; SV 1; circular; genomic DNA; STD; VRL; 2644 BP. XX AC JX871384; XX DT 04-FEB-2013 (Rel. 115, Created) DT 04-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Sida mottle Alagoas virus isolate BR:Vsa1:10 segment DNA-A, complete DE sequence. XX KW . XX OS Sida mottle Alagoas virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2644 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT "Further molecular characterization of weed-associated begomoviruses in RT Brazil with an emphasis on Sida spp."; RL Unpublished. XX RN [2] RP 1-2644 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT ; RL Submitted (26-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 416b17fee230ac2ab053a093558d0f51. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman6.0 v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2644 FT /organism="Sida mottle Alagoas virus" FT /segment="DNA-A" FT /host="Sida urens" FT /isolate="BR:Vsa1:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2010" FT /db_xref="taxon:1266995" FT CDS 226..981 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:L7YFK4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L7YFK4" FT /protein_id="AGD98622.1" FT /translation="MPKRDAPWRLMAGTSKVSRSSNFSPRSGIGPKINKASEWVIRPMY FT RKPRIYRALRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIIN" FT CDS complement(978..1376) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:L7YDB9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L7YDB9" FT /protein_id="AGD98623.1" FT /translation="MDSRTGELITAPQAENGVYIWEITNPLYFKIIRVEDPPYTRTRVY FT HIQIRFNHNLRRALDLHKAFLNFQVWTTSMTASGTTYLARFRHLVMMYLDQLGVIGLNN FT VIRAVRFATDRSYVNHVLENHSIKFNFY" FT CDS complement(1123..1512) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:L7Y844" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L7Y844" FT /protein_id="AGD98624.1" FT /translation="MLNSSSSTPPSIKPRHRIAKKRAVRRRRVDLDCGCSIYQHLNCTG FT HGFAHRGTHHCTSGREWRLYLGNNKSPLFQDNQGRGSTVHQDKSVPHPDKVQPQPEESI FT GSPQGIPQLPSLDDINDSFWDDLFS" FT CDS complement(1424..2509) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:L7YE45" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L7YE45" FT /protein_id="AGD98625.1" FT /translation="MPRKGSFCIKAKNYFLTFPRCSLTKEEALSQILNLKTPVNKKFIK FT ICRELHDDGEPHLHVLLQFEGKFQCTNNRFFDMVSPTRSAHFHPNIQGAKSSSDVKSYV FT EKDGDTMEWGEFQVDGRSARGGCQTSNDAAAEALNAATKEAALQIIKEKLPEKYLFQFH FT NLNSNLDRIFSKAPEPWAPPFHLSSFTNVPDEMQEWTDDYFGRGAAARPERPISLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNPRIYSDDAEYNVIDDVTPHYLKLKHWKELIGAQ FT KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFIFLN FT SPLYQTTTQDCQEESSQATTS" FT CDS complement(2095..2352) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L7YCB1" FT /protein_id="AGD98626.1" FT /translation="MGSLISTSSSSSKGNSNARITDSSTWCPQQGQHISIRTFRELNHR FT PTSSPTSRKTETPWNGENSRSTAEVLEEVAKRLTTLQQRH" XX SQ Sequence 2644 BP; 645 A; 579 C; 648 G; 772 T; 0 other; accggatggc cgcgcgattt tccccccccc cacgtggcgc tctcgtggcc gcgcgattcc 60 ctacctccgc gcgctccctg ctttaatttg aattaaagaa aataactttc gtctgagcca 120 atcatattgg ccctgagaag cctagataac tgtgacaaac ttggtcacta agtttgtgga 180 gtcctataaa attaaagcac gaatgacgtc agtctttaat tcagaatgcc taagcgggat 240 gccccgtggc gcctgatggc gggaacctca aaggtcagcc gctcttctaa cttttctcct 300 cgttcaggta ttgggccaaa aatcaacaag gcatctgaat gggtcatcag gcccatgtac 360 aggaagccca ggatatacag agcgttaagg acgcccgatg ttcctagagg ctgtgaaggg 420 ccctgtaagg tccagtcgta cgagcagcga catgacatct ctcatgtcgg caaggtgatg 480 tgtatatctg atgtgacacg cggtaacggt attactcacc gtgtcggtaa gcgtttttgt 540 gttaagtctg tgtatatttt aggtaagata tggatggacg agaatatcaa gctcaagaac 600 cacacgaaca gtgttatgtt ctggttggtc agggatcgta gaccgtatgg tacacccatg 660 gactttggcc aggtgtttaa catgttcgac aacgagccca gcactgcgac cgtcaagaac 720 gatctccgag atcgttacca ggtcatgcac aagttctatg ccaaggttac tggtggtcaa 780 tatgccagca acgaacaggc tctggtcaag aggttctgga aggttaacaa ttatgtggtg 840 tacaatcacc aagaggctgg caagtacgag aatcacacgg agaacgcttt attactgtat 900 atggcatgta ctcatgcctc gaaccctgtg tatgctacgc ttaagattcg gatctatttt 960 tacgattcga tcatcaatta ataaaagttg aattttattg aatgattttc tagtacatga 1020 tttacatatg aacggtctgt tgcgaaacga acagccctaa taacattatt aagaccaata 1080 actcctaatt gatctaagta catcatgact agatgtctaa atctagctaa ataagtcgtc 1140 ccagaagctg tcattgatgt cgtccagact tggaagttga ggaatgcctt gtggagatcc 1200 aatgctctcc tcaggttgtg gttgaacctt atctggatgt ggtacactct tgtcctggtg 1260 tacggtggat cctctaccct gattatcttg aaatagaggg gatttgttat ttcccagata 1320 tagacgccat tctctgcctg aggtgcagtg atgagttccc ctgtgcgcga atccatgtcc 1380 tgtgcagttg agatgctggt atatggagca gccgcagtca agatcaactc gtcgtcgcct 1440 gactgctctc ttcttggcaa tcctgtgtcg tggtttgata gaggggggag ttgaggaaga 1500 tgaatttagc attgtggagt gtccaagcct ttagtgatgc attttcctct ttgtcgagga 1560 aatctttata gctagccccc tctccaggat tgcagagcac gattgatggg ataccccctt 1620 taatttgaac aggctttccg tatttgcaat ttgactgcca gtctttttga gcaccaatca 1680 gttccttcca gtgctttaac tttagataat gcggggtgac atcatcgatg acgttgtact 1740 cagcgtcgtc tgagtaaatt cttggattga agtccaggtg tccactcaga taattatgtg 1800 ggcctaacgc acgagcccac attgtcttcc ccgttcgaga gtcaccctct acaattaaac 1860 ttatgggtct ttctggccgc gcagcggcac ctctcccaaa ataatcgtca gtccactcct 1920 gcatctcgtc gggaacgtta gtgaaggagg agaggtgaaa cggaggagcc catggttccg 1980 gagccttgga aaaaatccta tctaggtttg aattaagatt atggaactga aataagtatt 2040 tttcagggag tttttccttt attatttgaa gagcagcttc ttttgtagct gcgtttaatg 2100 cctctgctgc agcgtcgtta gacgtttggc aacctcctct agcacttctg ccgtcgacct 2160 ggaattctcc ccattccatg gtgtctccgt ctttctcgac gtaggacttg acgtcggacg 2220 atgatttagc tccctgaatg ttcggatgga aatgtgctga ccttgttggg gacaccatgt 2280 cgaagaatct gttattcgtg cattggaatt tcccttcgaa ctggaggagg acgtggagat 2340 gaggctcccc atcgtcgtga agctctctgc agattttgat gaatttcttg ttaactggtg 2400 tttttaggtt gaggatttgg gaaagtgctt cttctttggt taaagagcac cgtggaaatg 2460 tgaggaaata gtttttggct tttatgcaga aagaaccctt ccgtggcatt tttgtaaata 2520 aggcatgtac ccccgattgg tttcggctct aaaacttata tgaattgggg gtactggggg 2580 ttcatttata ctataacttc ctaatgggca tagggggcac gtggcggcca tccgctataa 2640 tatt 2644 //