ID   JX871383; SV 1; circular; genomic DNA; STD; VRL; 2690 BP.
XX
AC   JX871383;
XX
DT   04-FEB-2013 (Rel. 115, Created)
DT   04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida yellow mosaic Alagoas virus isolate BR:Vsa3:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Sida yellow mosaic Alagoas virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2690
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   "Further molecular characterization of weed-associated begomoviruses in
RT   Brazil with an emphasis on Sida spp.";
RL   Unpublished.
XX
RN   [2]
RP   1-2690
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   ;
RL   Submitted (26-SEP-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
DR   MD5; 098edfe84d37ebfd9088c5d6f92bf863.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman6.0 v. 6.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2690
FT                   /organism="Sida yellow mosaic Alagoas virus"
FT                   /segment="DNA-A"
FT                   /host="Sida urens"
FT                   /isolate="BR:Vsa3:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:1266994"
FT   CDS             261..1016
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7YFK1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:L7YFK1"
FT                   /protein_id="AGD98617.1"
FT                   /translation="MSKREAPWRSMAGVSKVRRSLNFSPRGGLGSRSNKAMEWVNRPMY
FT                   KKPRIYRAFRTSDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASKPVYATLKIRIYFYDSISN"
FT   CDS             complement(1013..1411)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:L7YDB0"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L7YDB0"
FT                   /protein_id="AGD98618.1"
FT                   /translation="MDSRTGEYITAPQAENGVYIWEITNPLYFKITKVEDLVYTNTRIY
FT                   HINIRFNHNLRKVLDLHKAFLNFQVWTTSVTASGTTYLNRFKYLVLLYLDRLGVISINN
FT                   VIRAVRFSTDRSYVNHVLENHSIKFKIY"
FT   CDS             complement(1158..1547)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:L7Y840"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L7Y840"
FT                   /protein_id="AGD98619.1"
FT                   /translation="MLSSSPSQPLSIKIQHRASKKRATRRRRIDCTCGCSIYVHINCSN
FT                   HGFTHRGIHHCASGREWRLYMGDNKSPLFQDNKGRGSSLHQHQDLPHQHQIQPQPEESI
FT                   GSPQSIPQFPGLDDISDSFWDDIFK"
FT   CDS             complement(1468..2544)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:L7YE40"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L7YE40"
FT                   /protein_id="AGD98620.1"
FT                   /translation="MPRKGSFSIKAKNYFITYPRCSLTKEDTLSQLQALQTPVNKKFIK
FT                   ICRELHDDGHPHLHVLINRKGKFNCTNNRLFDLVSPTRSTHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTIEWGVFQIDGRSARGGQQTANDAAAEALNAGTKEEAMRIIKEKLPEKFLFQYH
FT                   NLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEIQDWADAYFGRGAAARPERPVSIIIEG
FT                   DSRTGKTMWARALGAHNYLSGHLDFNSRVYSNDVAYNVIDDVPPHYLKLKHWKELIGSQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLQKEENASLKNWTLHNAIFITLT
FT                   APLYQNSTQSVEEESNSP"
FT   CDS             complement(2130..2387)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L7YCA8"
FT                   /protein_id="AGD98621.1"
FT                   /translation="MGTLISTCLSIEKGSSTARITDCSTWYPQPGQHISIQTYRELNPA
FT                   PMLSHTSRRTVTPSNGECSRSTGEVLEEVNRQLMTLQLRR"
XX
SQ   Sequence 2690 BP; 656 A; 578 C; 647 G; 807 T; 2 other;
     accggatggc ccgcgatttt tccccccctc ctacgtgggc gctctggtgt ccgttggatt        60
     gttccccccc cgacccgctc ccgcatttcg cgccgctttg tctgccatta tatgtggtcc       120
     ctaaagtgaa agacatctaa caggcccaat catattgggc cctgaatgat tatttagttt       180
     tgaaatactt gggcgcgaag tttttagatt tgtataaatt tgacccaact gtgattggac       240
     tacacaggct ttaattcaaa atgtctaagc gggaagcccc gtggcgttct atggcgggag       300
     ttagtaaagt gcggcgctcc ctcaattttt cacctcgtgg aggtttgggc tctaggtcaa       360
     acaaggccat ggagtgggtc aacaggccca tgtacaagaa gcccagaatt taccgggcct       420
     tcagaacttc tgacgtccct cgagggtgtg aagggccttg caaggtccag tcctacgaac       480
     agcggcacga catctcacat gtcggcaagg tgatgtgtat atccgatgtc acccgtggta       540
     acggtattac gcaccgtgtg ggtaagcgat tctgtgttaa gtctgtatat attttaggta       600
     aggtatggat ggatgagaat attaagctca agaaccacac gaacagtgtt atgttctggt       660
     tggtcaggga tcgtagaccg tatggtacac caatggattt tggccaggtg ttcaatatgt       720
     ttgacaacga gcccagtact gcaacggtta agaacgatct tcgagatcgt tatcaggtta       780
     tgcacaagtt ctatgccaaa gtaactggtg gacaatatgc cagcaatgag caggctctgg       840
     tcaagaggtt ctggaaggtc aacaatcatg tggtgtacaa tcaccaggag gctgggaagt       900
     acgagaatca tacggagaac gctctgttat tgtatatggc atgtactcat gcctcaaaac       960
     ccgtgtatgc aacgcttaag attcggatct atttttatga ttcgatttca aattaataaa      1020
     ttttgaattt tattgaatga ttttcgagta catggtttac atatgacctg tctgtcgaga      1080
     aacgaacagc tctaattaca ttattaattg aaataacgcc taatcgatct agatacaata      1140
     aaactaaata cttgaatcta tttaaatatg tcgtcccaga agctgtcact gatgtcgtcc      1200
     agacctggaa attgaggaat gctttgtgga gatccaatac tttcctcagg ttgtggttga      1260
     atctgatgtt gatgtggtag atcctggtgt tggtgtaaac tagatcctct acctttgtta      1320
     tcttgaaata gaggggattt gttatctccc atatatagac gccattctct gcctgaggcg      1380
     cagtgatgta ttcccctgtg cgtgaatcca tggttgctgc agttgatgtg gacgtatatg      1440
     gagcaaccac aagtacagtc gatgcgtcta cggcgagttg ctctcttctt cgacgctctg      1500
     tgttgaattt tgatagagag gggctgtgag ggtgatgaag atagcattat ggagcgtcca      1560
     gttttttaaa cttgcatttt cctccttctg gaggaaatct ttatagctgg ccccctctcc      1620
     tggattgcaa agcacgattg atgggatccc tcctttaatt tgaactggct ttccgtattt      1680
     acaatttgac tgccaatcct tttgggaccc aatgagttct ttccagtgct ttagctttag      1740
     gtagtgcggg gggacgtcat cgatgacgtt atatgccacg tcatttgaat aaaccctgga      1800
     attaaaatcc aggtgtccac ttaaatagtt atgggccccc aacgcacgag cccacatcgt      1860
     cttccccgtt cgactatcac cctcgatgat gatactaaca ggtctctccg gccgcgcagc      1920
     ggcacctctc ccgaaataag catcagccca atcttgaatc tcgtccggaa cgttagtgaa      1980
     tgaggatagt ggaaaaggag gagtccatgg ctcaggagct tttttgaaaa ttctatcaag      2040
     gttacttgat aggttgtgat attggaagag aaacttttcc ggcagcttct ctttgatgat      2100
     tctcatagcc tcttcctttg ttccagcatt taacgcctca gctgcagcgt cattagctgt      2160
     ctgttgacct cctctagcac ttctcccgtc gatctggaac actccccatt cgatggtgtc      2220
     accgtccttc tcgacgtatg acttaacatc ggagctggat ttagctccct gtatgtttgg      2280
     atggaaatgt gttgacctgg ttggggatac caggtcgaac agtctgttat tcgtgcagtt      2340
     gaacttccct tttcgattga taagcacgtg gagatgaggg tgcccatcgt cgtgtagctc      2400
     tctgcagatc ttgatgaact tcttgttaac tggggtttgt aaggcttgta actgggaaag      2460
     tgtgtcttct ttggttaatg aacatcgtgg ataagtgatg aaataatttt tggcttttat      2520
     agaaaaagaa cccttccgtg gcatttttgt aaataaggct atgtaccccc aattggtttg      2580
     gcgttccccc aattggtctg gctctcaaaa ctctcatgaa ttgggggaac tgggggaact      2640
     tatatactag aagttcctaa ggggcacgtg gsgsccatcc gtttaatatt                 2690
//