ID JX871382; SV 1; circular; genomic DNA; STD; VRL; 2664 BP. XX AC JX871382; XX DT 04-FEB-2013 (Rel. 115, Created) DT 04-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Sida yellow blotch virus isolate BR:Chp1:10 segment DNA-A, complete DE sequence. XX KW . XX OS Sida yellow blotch virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2664 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT "Further molecular characterization of weed-associated begomoviruses in RT Brazil with an emphasis on Sida spp."; RL Unpublished. XX RN [2] RP 1-2664 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT ; RL Submitted (26-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 011be4431cb3192fad770b751ed8eacc. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman6.0 v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2664 FT /organism="Sida yellow blotch virus" FT /segment="DNA-A" FT /host="Sida urens" FT /isolate="BR:Chp1:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2010" FT /db_xref="taxon:1266993" FT CDS 245..1000 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:L7YFJ5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:L7YFJ5" FT /protein_id="AGD98612.1" FT /translation="MPKRDAPWRLMAGTSKVSRSSNAAPRGGSGPKYNKANEWVNRPMY FT RKPRIYRAFRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT CDS complement(997..1395) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:L7YDA8" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L7YDA8" FT /protein_id="AGD98613.1" FT /translation="MDSRTGELITAHQAENGVYIWEITNPLYFRIYRVEDPPYTRTRVY FT HVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGKTYLNRFSDLVMLYLDRLGVITLNN FT VIRAVRYATNKSYVNHVLENHSIKFKFY" FT CDS complement(1142..1531) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:L7Y835" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L7Y835" FT /protein_id="AGD98614.1" FT /translation="MLNSSSSTPPSIKPRHRIAKSRAPRRRRIDLDCGCSLYVHINCSK FT YGFTHRGTHHCASGREWRLYLGDNKSPVFQDIQGRGSTVHEDQSVPRTDKVQPQPQESI FT GSPQGIPELPSLDDFSDSFWEDLFE" FT CDS complement(1452..2528) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:L7YE38" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L7YE38" FT /protein_id="AGD98615.1" FT /translation="MPRKGSFCIKAKNYFLTYPRCSLTKEETLSQLLNLTTPVNKKFIK FT ICRELHEDGEPHIHVLLQFEGKFQCTNNRFFDMVSPTRSTHFHPNIQGAKSASDVKSYV FT EKDGDTMEWGEFQVDGRSARGGCQTANDAAAEALNAASKEAALQIIKEKLPEKYLFQFH FT NLHSNLDRIFSKAPEPWAPPFHLSSFTNVPDEMQEWADDYFGRGAAARPERPISLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSDDAEYNVIDDVTPHYLKLKHWKELIGAQ FT KEWQSNCKYGKPRKIKGGIPSIVLCNPGEGASYKEYLDKEENASLRAWTLHNAKFIFLD FT SPLYQTTTQDCEEQSTST" FT CDS complement(2114..2371) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L7YCA4" FT /protein_id="AGD98616.1" FT /translation="MGSLISTSSSSSKGNSNARIIDSSTWCPQQGQHISIRTFRELNQR FT PTSSPTSRKTETPWNGENSRSTAEVLEEVAKRLTTLQQRP" XX SQ Sequence 2664 BP; 638 A; 610 C; 654 G; 761 T; 1 other; accggatggc cgcgcgattt tccccccccc cccccacgtg gcgctctggt ggccgcgcga 60 tcccgttccc cttccccccc ccgcgcgcgt ctctctcctt taatttgaat taaaggattt 120 aactttcgtt ccgaccaatg ataatgcgtc tgactagctt agataactgt gaaagacttg 180 gtccctaagt tgttgattaa cggctataaa ttaaaggaag accgggtagg gtcttcaatt 240 caagatgcct aagcgggatg ccccgtggcg cctgatggcg ggaacttcta aggttagccg 300 ttcctcgaat gccgctcctc gtggaggttc tgggcctaag tacaacaagg ccaatgagtg 360 ggtcaaccga cccatgtaca ggaagcccag gatataccgg gccttcagaa ctccagatgt 420 ccctcgaggg tgtgaagggc catgcaaggt gcagtcctat gaacagcgac atgatatctc 480 tcatgtcggt aaggtgatgt gtatatctga cgtcacccga ggtaatggca ttactcaccg 540 tgtcggtaag cgtttctgtg ttaagtctgt gtacatttta ggtaagatat ggatggacga 600 gaacatcaag ctaaagaacc acacgaacag tgtcatgttc tggttggtca gggaccgtag 660 accgtatggt acaccaatgg actttggcca ggtgttcaac atgttcgaca acgagcccag 720 cactgctacg gttaagaacg atctccgtga tcgttatcag gtgatgcaca agttctatgc 780 caaagtcact ggtggtcagt atgccagcaa tgaacaggct ctggtcaaga ggttctggaa 840 ggtcaacaat catgtggtgt ataatcacca ggaggctggg aagtacgaga atcacacgga 900 gaacgctctg ttactgtaca tggcatgcac tcatgcctct aaccctgtgt atgcaacgct 960 taagattcgg atctacttct acgattcgat catgaattaa taaaatttga attttattga 1020 atgattttct agtacatggt tgacgtatga cttgttcgtc gcataacgaa cagccctaat 1080 tacattatta agagtaataa ctcctaatcg gtctaagtac agcatgacta agtcactaaa 1140 cctattcaaa taagtcttcc cagaagctgt cagagaagtc gtccagactt ggaagttcag 1200 gaatgccttg tggagaccca atgctctcct gaggttgtgg ttgaacctta tctgtacgtg 1260 gtacactctg gtcctcgtgt acggtggatc ctctaccctg tatatcctga aatacagggg 1320 atttgttatc tcccagatat aaacgccatt ctctgcctga tgcgcagtga tgagttcccc 1380 ggtgcgtgaa tccatatttg ctgcagttga tgtggacgta caaggagcag ccgcagtcaa 1440 gatcgattcg tctacgtcga ggtgctctgc tcttcgcaat cctgtgtcgt ggtttgatag 1500 aggggggagt cgaggaagat gaatttagca ttgtggagtg tccaggctct caatgatgca 1560 ttttcctcct tgtcgagata ctctttataa ctggccccct ctccaggatt gcagagcacg 1620 attgatggga tacccccttt aatctttctt ggcttgccgt acttgcaatt tgactgccac 1680 tctttttgag caccaatcaa ttccttccag tgctttagct ttagataatg gggtgtgaca 1740 tcatcgatga cgttgtactc agcgtcgtct gagtagaccc gggaattgaa atccagatgg 1800 ccgcttaagt aattatgtgg gcctaatgca cgagcccaca tcgtcttgcc cgttctagag 1860 tcaccctcaa caattaaact tatgggcctc tctggccgcg cagcggcacc tctcccaaaa 1920 taatcatcgg cccactcttg catctcgtct ggcacgttag tgaaggagga gaggtgraac 1980 ggaggagccc acggttccgg agctttggaa aaaatcctgt ctaagttgga atgaagatta 2040 tggaactgaa ataagtattt ttcaggtagt ttttccttta ttatttgtag ggcagcttct 2100 tttgaagctg cgtttaaggc ctctgctgca gcgtcgttag ccgtttggca acctcctcta 2160 gcacttctgc cgtcgacctg gaattctccc cattccatgg tgtctccgtc tttctcgacg 2220 taggacttga cgtcggacgc tgatttagct ccctgaatgt tcggatggaa atgtgttgac 2280 cttgttgggg acaccatgtc gaagaatcta ttattcgtgc attggaattt cccttcgaac 2340 tggaggagga cgtggatatg aggctcccca tcttcgtgaa gctctctgca gattttgatg 2400 aatttcttgt taactggtgt tgttaggtta agcaattggg aaagtgtttc ttctttggtt 2460 aaagaacatc gaggatatgt gaggaaataa tttttggctt ttatacagaa agaacccttt 2520 cgtggcattt ttgtaaataa tgcagtgtac ccccaattgg tttctgctct aaaactgcta 2580 tgaattgggg gtactggggg ttcatttata ctataacttc ttaagggcct taaggggcaa 2640 cgtggcggcc atccgtataa tatt 2664 //