ID JX871381; SV 1; circular; genomic DNA; STD; VRL; 2664 BP. XX AC JX871381; XX DT 04-FEB-2013 (Rel. 115, Created) DT 04-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Sida yellow blotch virus isolate BR:Rla2:10 segment DNA-A, complete DE sequence. XX KW . XX OS Sida yellow blotch virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2664 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT "Further molecular characterization of weed-associated begomoviruses in RT Brazil with an emphasis on Sida spp."; RL Unpublished. XX RN [2] RP 1-2664 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT ; RL Submitted (26-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 42d4b70410fc853ce1bc64e2d5f93b80. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman6.0 v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2664 FT /organism="Sida yellow blotch virus" FT /segment="DNA-A" FT /host="Sida urens" FT /isolate="BR:Rla2:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2010" FT /db_xref="taxon:1266993" FT CDS 240..995 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:L7YFJ1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:L7YFJ1" FT /protein_id="AGD98607.1" FT /translation="MPKRDAPWRLMAGTSKVSRSSNAAPRGGSGPKYNKANEWVNRPMY FT RKPRIYRAFRTPDVPRGCEGPCQVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT CDS complement(992..1390) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:L7YDA5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L7YDA5" FT /protein_id="AGD98608.1" FT /translation="MDSRTGELITAHQAENGVYIWEITNPLYFRIYRVEDPPYTWTSPY FT HVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGKTYLNRFRHLVMLYLDRLGVITLNN FT VIRAVRYATNKSYVNHVLENHSIKFKFY" FT CDS complement(1137..1526) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:L7Y832" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L7Y832" FT /protein_id="AGD98609.1" FT /translation="MLNSSSSTPPSIKPRHRIAKSRALRRRRIDLDCGCSLYVHIKCSK FT YGFTHRGTHHCASGREWRLYLGDNKSPVFQDIQGRGSTVHLDKPVPRTDKVQPQPQESI FT GSPQGIPELPSLDDFSDSFWEDLFE" FT CDS complement(1447..2523) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:L7YE33" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L7YE33" FT /protein_id="AGD98610.1" FT /translation="MPPPKPFKINAKNYFLTYPQCSLTKEEALSQLLNLSIPTNKKFIK FT IARELHEDGQPHLHVLIQFEGKFQCKNNRFFDLVSPTRSAHFHPNVQGAKSSSDVKSYV FT EKDGDTIEWGEFQIDGRSARGGCQTVNDTYAKALNAASAEEALQIIKEEQPQHFFLQHH FT NMMANAARIFQKAPEPWALPFHLSSFTNVPDEMQEWADDYFGRGAVARPERPISLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSDDAEYNVIDDVTPHYLKLKHWKELIGAQ FT KEWQSNCKYGKPRKIKGGIPSIVLCNLGEGASYKEYLDKEENASLRAWTLHNAKFIFLD FT SPLYQTTTQDCEEQSTST" FT CDS complement(2109..2366) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L7YCA1" FT /protein_id="AGD98611.1" FT /translation="MGSLISTSLSSSRGNSNAKITDSSIWSPQPGQHISIRTFRELNHR FT PTSSPTSRRTETPSNGENSKSTAEVLEEVARRLTTHMPRH" XX SQ Sequence 2664 BP; 648 A; 603 C; 647 G; 766 T; 0 other; accggatggc cgcgcgattt tccacccccc cacgtggcgc tctcgtggcc gcgcgatact 60 ctttcccttt cccccccgcg cgcgtctctc tcctttaatt tgaattaaag gaattaactt 120 tcgttccgac caatgataat gcgcctgact agcttagata actgtgaaag acttggtccc 180 taagttgttg attaacggct ataaattaaa ggaagaccgg gtagggtctt caattcaaga 240 tgcctaagcg ggatgccccg tggcgcctga tggcgggaac ttctaaggtt agccgttcct 300 cgaatgccgc tcctcgtgga ggttctgggc ctaagtacaa caaggccaat gagtgggtca 360 acagacccat gtacaggaag cccaggatat accgggcctt cagaactcca gatgtccctc 420 gagggtgtga agggccttgt caggtccagt cctatgaaca gcgacatgat atctctcatg 480 tcgggaaggt gatgtgtata tctgacgtca cccgaggtaa tggtattact caccgtgtcg 540 gtaagcgttt ctgtgttaag tctgtgtata tattaggtaa gatatggatg gacgagaata 600 tcaagctcaa gaaccacacg aacagtgtca tgttctggtt ggtcagggac cgtagaccgt 660 atggtacacc aatggacttt ggccaggtgt tcaacatgtt tgacaacgag cccagcactg 720 ctacggttaa gaacgatctt cgcgatcgtt atcaggtcat gcacaagttc tatgccaagg 780 tcactggcgg tcaatatgcc agcaatgaac aggctctggt caagaggttc tggaaggtca 840 acaatcatgt ggtgtataat catcaagagg ctgggaagta cgagaatcac acggagaacg 900 ctctgttact gtacatggca tgtactcatg cctctaaccc tgtgtatgca acgcttaaga 960 ttcggatcta cttctacgat tcgatcatga attaataaaa tttgaatttt attgaatgat 1020 tttccagtac atggttgacg tatgacttgt tcgtcgcata acgaacagcc ctaattacat 1080 tattaagagt aataacgcct aatcggtcta gatacagcat gactagatgt ctaaacctat 1140 tcaaataagt cttcccagaa gctgtcagag aagtcgtcca gacttggaag ttcaggaatg 1200 ccttgtggag acccaatgct ctcctgaggt tgtggttgaa ccttatctgt acgtggtacg 1260 ggcttgtcca ggtgtacggt ggatcctcta ccctgtatat cctgaaatac aggggatttg 1320 ttatctccca gatataaacg ccattctctg cctgatgcgc agtgatgagt tccccggtgc 1380 gtgaatccat atttgctgca cttgatgtgg acgtacaagg agcagccgca gtcaaggtcg 1440 attcgtctac gtcgaagtgc tctgctcttc gcaatcctgt gtcgtggttt gatagagggg 1500 ggagtcgagg aagatgaatt tagcattgtg gagtgtccag gctctcaatg atgcattttc 1560 ctccttgtcg agatactctt tataactggc cccctctcca agattgcaga gcacgattga 1620 tgggatacct cctttaatct ttcttggctt gccgtacttg caatttgact gccactcttt 1680 ttgagcacca atcaattcct tccagtgctt tagctttaga taatggggtg tgacatcatc 1740 gatgacgtta tactcagcat cgtctgagta cacccgggaa ttgaaatcca gatggccact 1800 taagtaatta tgtgggccta atgctcgagc ccacatcgtc ttgcccgttc gagagtcacc 1860 ctcaacaatt aaacttatgg gcctctctgg tcgcgcaacg gcacctctcc caaaataatc 1920 atcggcccac tcttgcatct cgtcgggaac gttagtgaaa gaggagaggt gaaacggaag 1980 agcccacggt tccggagcct tttgaaaaat ccgagcagca tttgccatca tgttatgatg 2040 ttgaaggaag aagtgctgtg gttgctcttc tttgattatt tgcaatgctt cttctgctga 2100 agcggcgttc aatgccttgg catatgtgtc gttaaccgtc tggcaacctc ctctagcact 2160 tctgccgtcg atttggaatt ctccccattc gatggtgtct ccgtccttct cgacgtagga 2220 cttgacgtcg gacgatgatt tagctccctg aacgttcgga tggaaatgtg ctgacctggt 2280 tggggagacc agatcgaaga atctgttatt tttgcattgg aatttcccct cgaactggat 2340 aaggacgtgg agatgaggct gcccatcttc gtgaagttct cttgcgattt tgatgaactt 2400 cttattagtt gggattgata ggtttaataa ttgggaaagt gcttcttctt tagtaagaga 2460 gcactgtgga taagtaagaa aataattttt ggcatttatt ttaaatggct ttggtggtgg 2520 catttttgta aataaggctt ggacaccaat tggagtctct caactctttg ctatgcaatc 2580 ggtgtctgga gtctcattta tactagaacc ctcaatagaa ctttagatcc tgttcgcaca 2640 cctggcggcc atccgtataa tatt 2664 //