Dbfetch
ID JX871376; SV 1; circular; genomic DNA; STD; VRL; 2676 BP. XX AC JX871376; XX DT 04-FEB-2013 (Rel. 115, Created) DT 04-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Sida yellow net virus isolate BR:Vic2:10 segment DNA-A, complete sequence. XX KW . XX OS Sida yellow net virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2676 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT "Further molecular characterization of weed-associated begomoviruses in RT Brazil with an emphasis on Sida spp."; RL Unpublished. XX RN [2] RP 1-2676 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT ; RL Submitted (26-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 5ae7ab215d7524704869184da97081a8. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman6.0 v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2676 FT /organism="Sida yellow net virus" FT /segment="DNA-A" FT /host="Sida micrantha" FT /isolate="BR:Vic2:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2010" FT /db_xref="taxon:1266977" FT CDS 253..1008 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:L7YFH4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:L7YFH4" FT /protein_id="AGD98582.1" FT /translation="MPKRDPSWRQMAGTSKVSRTSNFSPRGGGGPKFNKASEWVNRPMY FT RKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDITRGNGITHRVGKRF FT CVKSVYILGKVWMDENIKLKNHTNSCMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV FT KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(1005..1403) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:L7YD87" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L7YD87" FT /protein_id="AGD98583.1" FT /translation="MDSRTGELITAPQAENGVYIWEITNPLYFKIYHVEDMLYTTTRVY FT HVQIRFNHNLRKALDLHKAFLNFQVWTTSLTASGTTYLIRFRHLVMMYLDRLGVITINN FT VIRAVRYATDRSYVRYVLENHSIKFKLY" FT CDS complement(1150..1539) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:L7Y814" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L7Y814" FT /protein_id="AGD98584.1" FT /translation="MQNSSSSTPPCIKVQHRAAKRRGTRRRRIDIQCGCTVYVHINCSN FT HGFTHRGTHHCASGREWRLYLGDNKSPVFQDIPRRGHVVHDDQSVPRTDTVQPQPQESI FT GSPQGIPELPSLDDISDSFWNDLFD" FT CDS complement(1460..2539) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:L7YE13" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L7YE13" FT /protein_id="AGD98585.1" FT /translation="MPRKGSFCIKAKNYFITYPRCSLTKEETLSQFLDIQTPVNKKFIK FT ICRELHENGEPHLHVLLQFEGKFQCTNNRLFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGQFQVDGRSARGGQQTANDAAAEALNAPDKQTALQIIREKLPEKFLFQFH FT NLNSNLNRIFTKAPEPWVPPFPLSSFTNVPDEMQEWADEYFGRGSAARPLRPMSLIVEG FT DSRTGKTMWARALGPHNYLSGHLDFNSRVYSNEVEYNVIDDVNPQYLKLKHWKELIGAQ FT KDWQSNCKYGKASSKLKVGYHQSCSAIQGEGVSYKEYLDKEENAALKSWTLHNAKFIFL FT DSPLYQSATQSGEEERNSP" FT CDS complement(2125..2382) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L7YC82" FT /protein_id="AGD98586.1" FT /translation="MGSLISTSFSSSKGNSSARIIDCSTWYPQQGQHISIRTFRELNPA FT PTSSPTSTKTEIQLNGDSSRSTEEVLEEANRQLMMLQLRR" XX SQ Sequence 2676 BP; 669 A; 620 C; 610 G; 777 T; 0 other; accggatggc cgcgcgattt ctcccccccc cctacgtggc gctctggtgg ccgctcgatc 60 cccccacccg ctcgcgtgga gtccccccgt acccgcgcgc tcatcaaatt taatttgaat 120 taaaggtttt atcttttgtt tagccaatga tattgcgcct gagaagctta gatatctgtg 180 taatacttcg tccccaagtt ttataacccc tataaaacta aagcattaat gacgtcatac 240 tttaattcag gaatgcctaa gcgggatccc tcatggcgcc agatggcggg aacctcaaag 300 gttagccgca cttccaattt ctcacctcgt ggaggtggag gcccaaaatt caacaaggcc 360 tcagaatggg ttaacaggcc catgtacagg aagcccagga tatatcggac gctgagaaca 420 cctgatgtgc ctagaggctg tgaaggaccc tgtaaggtcc agtcgtacga gcaacgtcac 480 gatatctccc atgttgggaa ggtgatgtgt atatctgata ttactcgcgg taacggtatt 540 acccaccgtg taggtaagcg tttttgtgtt aagtctgtgt acattctagg taaggtgtgg 600 atggacgaga acatcaagct caagaaccac acgaacagtt gcatgttctg gttggtcagg 660 gaccgtagac cgtatggcac acctatggat tttggccagg tattcaacat gttcgacaac 720 gagcctagca ctgcaaccgt gaagaacgat ctgcgtgatc gtttccaagt catgcataag 780 ttctatgcca aggtcactgg tggacagtat gccagcaacg agcaggcgct ggtcaagcgt 840 ttctggaagg tcaacaatca tgtagtttat aatcaccagg aagctgggaa gtacgagaat 900 catacagaga acgctttatt attgtatatg gcatgtactc atgcctctaa ccctgtgtat 960 gcaacgctca agattcgaat ctatttctac gattcgatca ccaattaata aagcttaaat 1020 tttattgaat gattttccag tacatatctg acgtaagatc tgtcagtcgc ataacgaaca 1080 gctctaatta cattgtttat cgtaataaca cctaatcggt ctaaatacat catgactaaa 1140 tgtctaaatc taatcaaata agtcgttcca gaagctgtca gagatgtcgt ccagacttgg 1200 aagttcagga atgccttgtg gagatccaat gctttcctga ggttgtggtt gaaccgtatc 1260 tgtacgtggt acactctggt cgtcgtgtac aacatgtcct ctacgtggta tatcttgaaa 1320 tacaggggat ttgttatctc ccagatatag acgccattct ctgcctgagg cgcagtgatg 1380 agttccccgg tgcgtgaatc catgattgct gcagttgatg tggacgtaga cggtgcaccc 1440 gcactgtata tcaattcttc tacggcgagt tcctctcctc ttcgccgctc tgtgttgcac 1500 tttgatacag gggggagtcg aggaagatga attttgcatt gtggagtgtc cacgacttta 1560 atgctgcatt ctcctctttg tctaggtact ctttataact gactccctcc ccctggattg 1620 cagagcacga ttgatggtat cccaccttta attttgaact ggcttttccg tacttgcaat 1680 ttgactgcca gtctttttga gcaccaatca actccttcca gtgctttaac tttagatatt 1740 gcgggttgac gtcatcaatg acgttgtatt ccacttcgtt cgagtaaacc ctagaattga 1800 agtcgagatg accactcaag taattatgtg ggcctaacgc acgagcccac atcgtcttcc 1860 ctgttcgact atcaccttcg actatcaaac tcataggtct caatggccgc gcagcggaac 1920 cccttccaaa atactcatcc gcccactctt gcatctcgtc gggaacgtta gtgaaggagg 1980 ataggggaaa cggaggaacc cacggctccg gagcctttgt gaaaattcta tttaaattag 2040 aatttaaatt gtgaaattga aaaagaaatt tttccggcaa tttctcccta attatttgca 2100 gagccgtctg tttatccgga gcatttaacg cctcagctgc agcatcatta gctgtctgtt 2160 ggcctcctct agcacttctt ccgtcgacct ggaactgtcc ccattcaatt gtatctccgt 2220 ctttgtcgat gtaggacttg acgtcggagc tggatttagc tccctgaatg ttcggatgga 2280 aatgtgctga ccttgttggg gataccaggt cgaacaatct attattcgtg cactggaatt 2340 tcccttcgaa ctggagaagg acgtggagat gaggctcccc attttcatga agctctctgc 2400 atattttgat gaatttcttg ttgaccggtg tttgaatgtc aagaaattgg gaaagtgttt 2460 cttctttggt taacgaacac cggggatatg ttatgaaata gtttttggct tttatacaga 2520 aagaaccctt ccgtggcatt tttgtaaata aggctgtgta cccccgattg ctctccgctc 2580 taaaactcct atgaattggg ggtactgggg gtacatttat actagaagtt cctataggac 2640 ttaaaggggt acgtggcggc catccgctat aatatt 2676 //