ID   JX871373; SV 1; circular; genomic DNA; STD; VRL; 2644 BP.
XX
AC   JX871373;
XX
DT   04-FEB-2013 (Rel. 115, Created)
DT   04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida common mosaic virus isolate BR:Vic8:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Sida common mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2644
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   "Further molecular characterization of weed-associated begomoviruses in
RT   Brazil with an emphasis on Sida spp.";
RL   Unpublished.
XX
RN   [2]
RP   1-2644
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   ;
RL   Submitted (26-SEP-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
DR   MD5; 70528e454d05d807dd2a446b8671ddfb.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman6.0 v. 6.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2644
FT                   /organism="Sida common mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Sida micrantha"
FT                   /isolate="BR:Vic8:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:536082"
FT   CDS             229..978
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7YFG3"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:L7YFG3"
FT                   /protein_id="AGD98567.1"
FT                   /translation="MPKRDAPWRLMAGTSKVSRSSNFSARGGPKINKASEWVNRPMYRK
FT                   PRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCV
FT                   KSVYIIGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN
FT                   DLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLL
FT                   YMACTHASNPVYATLKIRIYFYDSVSN"
FT   CDS             complement(975..1373)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:L7YD78"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L7YD78"
FT                   /protein_id="AGD98568.1"
FT                   /translation="MDSRTGEFITAPQAENGVYIWEITNPLYFKIYHVEDILFTGTRVY
FT                   HIQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMLYLDQLGVISINN
FT                   VIRAVRFATNRPYVNHVLEKHSIKFTIY"
FT   CDS             complement(1120..1509)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:L7Y805"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L7Y805"
FT                   /protein_id="AGD98569.1"
FT                   /translation="MLSSSPSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHS
FT                   HGFTHRGVHHCSSSREWRVYLGNNKSPIFQDLPCRRHPVHRDQSVSHPDTVQPQPQESV
FT                   GSPQGIPELPSLDDISEGFWDDIFT"
FT   CDS             complement(1430..2509)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:L7YE02"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L7YE02"
FT                   /protein_id="AGD98570.1"
FT                   /translation="MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIK
FT                   VARELHEDGQPHLHVLIQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSTDVESYV
FT                   DKDGDTVEWGTFQIDGRSARGGQQTANDAAAEALNAGTKEEAMMIIKEKMPEKFLFQYH
FT                   NLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIE
FT                   GDSRTGKTMWARALGAHNYLSGHLDFNSRIYSNEVDYNVIDDVPPHYLKLKHWKELIGA
FT                   QKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKMFLDKEENSGLKNWTIHNAIFVTL
FT                   TAPLYQGSAQSGEEEGNSP"
FT   CDS             complement(2095..2352)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L7YC73"
FT                   /protein_id="AGD98571.1"
FT                   /translation="MGSHISTFSFSSKGSSTAQIADCSTWYPHPGQHISIRTYRVLNPA
FT                   PTSSPTSIKTVIQSNGGRSRSTEEVLEEASRRLTTQPPKR"
XX
SQ   Sequence 2644 BP; 658 A; 608 C; 637 G; 741 T; 0 other;
     accggatggc cgcgcgattt tttgcccccc ctacgtggcg ctatggtggc cgctcgatct        60
     ctctctcccg cgcgctgtac tcctttaatt ctaattaaag ggctaacttt agtttcgacc       120
     aatgatagtg cgcctgggaa gtctagatat ctgcgcgata cttggggccg aagttgttga       180
     tcaacggcta taaattaaag gaagactgat cacagtcttt tattcaaaat gcctaagcgg       240
     gatgccccgt ggcgcctgat ggcgggaacc tcaaaggtaa gccgctcctc caatttctcc       300
     gcccgaggag gcccaaagat caacaaggcc tccgaatggg ttaacaggcc gatgtacagg       360
     aagcccagga tatacaggac tttaagaact cctgatgttc ccagaggctg tgaaggtcct       420
     tgtaaggtac agtcttacga gcagcgacat gacatctcac atgtcgggaa ggtgatgtgc       480
     atttctgatg tgacacgtgg taacggtatt acccaccgtg tcggtaagcg tttttgtgtt       540
     aagtctgtgt atattatagg taaggtatgg atggacgaga acatcaagct caagaaccac       600
     acgaacagtg tgatgttctg gttggtcagg gaccgtagac cgtatggtac accgatggat       660
     ttcgggcaag tgttcaacat gttcgacaac gagcctagta ctgcaaccgt gaagaacgat       720
     cttcgtgatc gtttccaggt catgcacaag ttctatgcca aggtcactgg tggacaatac       780
     gcgagcaacg agcaggcgct ggtcaagcgt ttctggaagg tcaacaatca tgtggtgtac       840
     aaccaccagg aagctggcaa gtacgagaat cacacggaga atgcattatt actgtacatg       900
     gcatgtactc atgcctctaa ccctgtgtat gcgaccctta aaatccggat ctatttttat       960
     gattcggttt caaattaata aattgtgaat tttattgaat gcttctccag tacatgattt      1020
     acataaggcc tgttcgtcgc gaaacgaaca gctctaataa cattattaat tgagattaca      1080
     cctaattgat ctaaatacaa catgactaaa tgcctaaatc tatgtaaata tgtcatccca      1140
     gaagccttca ctgatgtcgt ccagacttgg aagttcagga atgccttgtg gagacccaac      1200
     gctctcctga ggttgtggtt gaaccgtatc tggatgtgat acactctggt ccctgtgaac      1260
     aggatgtctt ctacatggta gatcttgaaa tataggggat ttgttatttc ccagatatac      1320
     acgccattct ctgcttgagg agcagtgatg aactcccctg tgcgtgaatc catggctgtg      1380
     gcagttgatg tggacgtata tggagcagcc gcaatttagg tcgatccttc tacggcgagt      1440
     tgccctcttc ttcgccgctc tgtgctgaac cttgatagag aggggctgtg agggtgacga      1500
     agatagcatt atggatggtc cagttcttta gacctgagtt ttcctctttg tcgaggaaca      1560
     ttttatagct ggcaccctca cctggattgc agagcacgat tgatgggata ccacctttaa      1620
     tttgaactgg ctttccgtat ttacaatttg attgccagtc cttttgggcc ccaatcaact      1680
     ctttccagtg ctttagcttt aggtaatgcg gagggacgtc atcaatgacg ttataatcca      1740
     cttcgttcga gtaaatcctg gaattgaaat ccaggtgtcc actaagataa ttatgggccc      1800
     ctaaagctct agcccacatc gtcttccccg tccgactatc accttcgatg atgatactca      1860
     caggcctctc tggccgcgca gcggaaacga caagcccaaa atagtcatca gcccaagact      1920
     gcatctcgtc cggaacgtta gtgaaagaag agaggggaaa cggaggagtc catggctccg      1980
     gagccttctt gaaaattcta tccaggttac tggataggtt atggtactgg aagaggaact      2040
     tttccggcat cttttctttg ataatcatca tcgcctcctc ctttgttcca gcattcaacg      2100
     cttcggcggc tgcgtcgtta gccgtctgct ggcctcctct agcacttctt ccgtcgatct      2160
     ggaacgtccc ccattcgact gtatcaccgt ctttatcgac gtaggactcg acgtcggtgc      2220
     tggatttagc accctgtatg ttcggatgga aatgtgttga cctggatggg gataccaagt      2280
     cgaacagtct gctatttgtg cagttgaact tcccttcgaa ctgaatgaga acgtggagat      2340
     gtggctgccc atcttcgtgt aactctcttg caaccttgat gaacttcttg ttgaccggtg      2400
     tttggataac cctaatttgt tcgagagctt cctctttagg aagagagcac tgaggatatg      2460
     taagaaaata atttttagct ttaatagaga aagacccctt tcgtggcatt tttgtaaata      2520
     ttggtatgta cccccaattg ctctcgcctc taaaactctc atgaattggg ggaactgggg      2580
     gaacttatat atgagaagtt cctaaggtta gatctgacac gtggcggcca tccgctataa      2640
     tatt                                                                   2644
//