ID JX871371; SV 1; circular; genomic DNA; STD; VRL; 2643 BP. XX AC JX871371; XX DT 04-FEB-2013 (Rel. 115, Created) DT 04-FEB-2013 (Rel. 115, Last updated, Version 1) XX DE Sida common mosaic virus isolate BR:Vic4:10 segment DNA-A, complete DE sequence. XX KW . XX OS Sida common mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2643 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT "Further molecular characterization of weed-associated begomoviruses in RT Brazil with an emphasis on Sida spp."; RL Unpublished. XX RN [2] RP 1-2643 RA Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A., RA Assuncao I.P., Zerbini F.M.; RT ; RL Submitted (26-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n, RL Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 87aa0a80abe1b249d3b56ed7fd3f4375. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAman6.0 v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2643 FT /organism="Sida common mosaic virus" FT /segment="DNA-A" FT /host="Sida micrantha" FT /isolate="BR:Vic4:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /collection_date="2010" FT /db_xref="taxon:536082" FT CDS 228..977 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:L7YFF7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:L7YFF7" FT /protein_id="AGD98557.1" FT /translation="MPKRDAPWRLMAGTSKVSRSSNFSARGGPKVNKASEWVNRPMYRK FT PRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCV FT KSVYIIGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN FT DLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLL FT YMACTHASNPVYATLKIRIYFYDSITN" FT CDS complement(974..1372) FT /codon_start=1 FT /product="replication-enhancer protein" FT /note="REN" FT /db_xref="GOA:L7YD72" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L7YD72" FT /protein_id="AGD98558.1" FT /translation="MDSRTGEFITAPQAENGVYIWETTNPLYFKIYHVEDILFTGTRVY FT HIQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVLLYLDQLGVISINN FT VIRAVRFATNRPYVNHVLEKHSIKFKIY" FT CDS complement(1119..1508) FT /codon_start=1 FT /product="transactivating protein" FT /note="TRAP" FT /db_xref="GOA:L7Y7Z7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L7Y7Z7" FT /protein_id="AGD98559.1" FT /translation="MLSSSPSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHS FT HGFTHRGVHHCSSSREWRVYLGDNKSPIFQDLPCRRHPVHRDQSVSHPDTVQPQPQESV FT GSPQGIPELPSLDDISEGFWDDIFT" FT CDS complement(1429..2508) FT /codon_start=1 FT /product="replication-associated protein" FT /note="REP" FT /db_xref="GOA:L7YDZ5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:L7YDZ5" FT /protein_id="AGD98560.1" FT /translation="MPRKGSFSIKAKNYFLTYPQCSLPKEEALEQIRVIQTPVNKKFIK FT VARELHEDGQPHLHVLIQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYV FT EKDGDTVEWGTFQIDGRSARGGQQTANDAAAEALNAGTKEEAMMIIKEKMPEKFLFQYH FT NLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNSRVYSNEVDYNVIDDVPPHYLKLKHWKELIGA FT QKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKMFLDKEENSGLKNWTIHNAIFVTL FT TAPLYQGSAQSGEEEGNSP" FT CDS complement(2094..2351) FT /codon_start=1 FT /product="AC4 protein" FT /note="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:L7YC66" FT /protein_id="AGD98561.1" FT /translation="MGSHISTYSFSSKGSSTAQIADCSTWYPHPGQHISIRTYRVLNPA FT PTSSPTSRKTVIQSNGGRSRSTEEVLEEASRRLTTQPPKR" XX SQ Sequence 2643 BP; 659 A; 605 C; 633 G; 746 T; 0 other; accggatggc cgcgcgattt tttgcccccc tacgtggcgc tctgttggcc gcccgatcgc 60 tctctcccgc gcgctgtact cctttaattc taattaaagg tataactttc gtttcgacca 120 atgatagtcc gcctgggaag cctagatatc tgcgcgatac ttggggccga agttgatgat 180 caacggctat aaattaaagg aagactgatc acagtcttta attcataatg cctaagcggg 240 atgccccgtg gcgcctgatg gcgggaactt caaaggtaag ccgctcctcc aatttctccg 300 cccgtggagg cccaaaggtt aacaaggcct ccgaatgggt taacaggccg atgtacagga 360 agcccaggat atacaggact ctgagaactc ctgatgttcc cagaggctgt gaagggcctt 420 gtaaggtcca gtcgtacgag cagcgacatg acatctccca tgtcggcaag gtgatgtgca 480 tttctgatgt gacacgtggt aacggtatta cccaccgtgt cggtaagcgt ttttgtgtta 540 agtctgtgta tattataggt aagatatgga tggatgagaa tatcaagctc aagaatcaca 600 cgaatagtgt gatgttttgg ttggtcagag atcgtagacc gtatggcacc ccaatggatt 660 tcggccaggt gttcaacatg ttcgacaacg agcctagtac tgccaccgtt aagaacgatc 720 tccgtgatcg ttatcaagtt atgcacaagt tctacgccaa ggtcactggt ggtcaatatg 780 ccagcaacga gcaggctctg gtcaagaggt tctggaaggt caacaatcat gtggtgtata 840 accaccagga agctggcaag tatgagaatc acacggagaa tgctctgtta ttgtatatgg 900 catgtacaca tgcctctaac cctgtgtatg caacgctaaa gattcgaatc tatttttacg 960 attcgataac gaattaataa attttgaatt ttattgaatg cttctccagt acatgattta 1020 cataaggcct gtttgtcgcg aaacgaacag ctctaataac attattaatt gagattacac 1080 ctaattgatc taaatacaac aagactaaat gcctaaatct atgtaaatat gtcatcccag 1140 aagccttcac tgatgtcgtc cagacttgga agttcaggaa tgccttgtgg agacccaacg 1200 ctctcctgag gttgtggttg aaccgtatct ggatgtgata cactctggtc cctgtgaaca 1260 ggatgtcttc tacatggtag atcttgaaat ataggggatt tgttgtctcc cagatataca 1320 cgccattctc tgcttgagga gcagtgatga actcccctgt gcgtgaatcc atggctgtgg 1380 cagttgatgt ggacgtatat ggagcagccg caatttaagt cgatccttct acggcgagtt 1440 gccctcttct tcgccgctct gtgctgaacc ttgatagaga ggggctgtga gggtgacgaa 1500 gatagcatta tggatggtcc agttctttag acctgagttt tcctctttgt cgaggaacat 1560 tttatagctg gaaccctcac ctggattgca gagcacgatt gatgggatac cacctttaat 1620 ttgaactggc tttccgtatt tacaatttga ttgccagtcc ttttgggccc caatcaactc 1680 tttccagtgc tttagcttta ggtaatgcgg agggacgtca tcaatgacgt tataatccac 1740 ttcgttcgag taaaccctgg aattgaaatc caggtgtcca ctaagataat tatgggcccc 1800 taaagctcta gcccacatcg tcttccccgt ccgactatca ccttcgatga tgatactcac 1860 aggcctctct ggccgcgcag cggaaacgac aagcccaaaa tagtcatcag cccaagactg 1920 catctcgtcc ggaacgttag tgaaagaaga gaggggaaac ggaggagtcc atggctccgg 1980 agcctttttg aaaattctat ccaggttact ggataggtta tggtactgga agaggaactt 2040 ttccggcatc ttttctttga taatcatcat cgcctcctcc tttgttccag cattcaacgc 2100 ttcggcggct gcgtcgttag ccgtctgctg gcctcctcta gcacttcttc cgtcgatctg 2160 gaacgtcccc cattcgactg tatcaccgtc tttctcgacg taggacttga cgtcggagct 2220 ggatttagca ccctgtatgt tcggatggaa atgtgttgac ctggatgggg ataccaagtc 2280 gaacagtctg ctatttgtgc agttgaactt cccttcgaac tgaatgagta cgtggagatg 2340 tggctgccca tcttcgtgta gctctcttgc aaccttgatg aatttcttgt tgaccggcgt 2400 ttggataacc ctaatttgtt cgagagcttc ctctttagga agagagcact gaggatatgt 2460 aagaaaataa tttttagctt taatagagaa agaccccttt cgtggcattt ttgtaaatat 2520 aggtatgtac ccccaattgc tctcgcctct aaaactctca tgaattgggg gaactggggg 2580 aacttatata tgagaagttc ctaaggttag atctgacacg tggcggccat ccgctataat 2640 att 2643 //