ID   JX871370; SV 1; circular; genomic DNA; STD; VRL; 2643 BP.
XX
AC   JX871370;
XX
DT   04-FEB-2013 (Rel. 115, Created)
DT   04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida common mosaic virus isolate BR:Vic3:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Sida common mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2643
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   "Further molecular characterization of weed-associated begomoviruses in
RT   Brazil with an emphasis on Sida spp.";
RL   Unpublished.
XX
RN   [2]
RP   1-2643
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   ;
RL   Submitted (26-SEP-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
DR   MD5; b2d639376a232c41ea0d833429a30a04.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman6.0 v. 6.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2643
FT                   /organism="Sida common mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Sida micrantha"
FT                   /isolate="BR:Vic3:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:536082"
FT   CDS             228..977
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7YFF2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:L7YFF2"
FT                   /protein_id="AGD98552.1"
FT                   /translation="MPKRDAPWRLMAGTSKVSRSSNFSARGGPKINKASEWVNRPMYRK
FT                   PRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCV
FT                   KSVYIIGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKN
FT                   DLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLL
FT                   YMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(974..1372)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:L7YD69"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L7YD69"
FT                   /protein_id="AGD98553.1"
FT                   /translation="MDSRTGEFITAPQAENGVYIWEITNPLYFKIYHVEDILFTGTRVY
FT                   HIQIRFNHNLRRALGLHKAFLNFQVWTTSVKASGMTYLHRFRHLVMMYLDQLGVISINN
FT                   VIRAVRFATNRPYVNHVLENHSIKFKFY"
FT   CDS             complement(1119..1508)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:L7Y7Z5"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L7Y7Z5"
FT                   /protein_id="AGD98554.1"
FT                   /translation="MLSSSPSQPLSIKVQHRAAKKRATRRRRIDLNCGCSIYVHINCHS
FT                   HGFTHRGVHHCSSSREWRVYLGDNKSPIFQDLPCRRHPVHRDQSVSHPDTIQPQPQESV
FT                   GSPQGIPELPSLDDISEGFWDDIFT"
FT   CDS             complement(1429..2508)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:L7YDZ3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L7YDZ3"
FT                   /protein_id="AGD98555.1"
FT                   /translation="MPRKGSFSIKAKNYFLTYPQCSLPKEEALKQIRVIRTQVNKKFIK
FT                   VARELHEDGQPHLHVLIQFEGKFNCTNSRLFDLVSPSRSTHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTIEWGTFQIDGRSARGGQQTANVAAAEALNAGTKEEAMMIIKEKMPEKFLFQYH
FT                   NLSSNLDRIFKKAPEPWTPPFPLSSFTNVPDEMQSWADDYFGLVVSAARPERPVSIIIE
FT                   GDSRTGKTMWARALGSHNYLSGHLDFISRVYSNEVDYNVIDDVPPHYLKLKHWKELIGA
FT                   QKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKMFLDKEENSGLKNWTIHNAIFVTL
FT                   TAPLYQGSAQSGEEEGNSP"
FT   CDS             complement(2094..2351)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L7YC64"
FT                   /protein_id="AGD98556.1"
FT                   /translation="MGSHISTFSFSSKGSSTAQIADCSTWYPHPGQHISIQTYRVLNPA
FT                   PTSSPTSRKMVIQSNGGRSRSTEEVLEEVNRLLTSQPPKR"
XX
SQ   Sequence 2643 BP; 664 A; 595 C; 629 G; 755 T; 0 other;
     accggatggc cgcgcgattt tttccccccc tacgtggcgc tctggtggcc gctcgatcca        60
     tcgctcccgc gcgctgtact cctttaattc taattaaagg tataactttc gtttcgacca       120
     atgatagtgc gcttgggaag cctagatatc tgcgcgatac ttggggccga agttgttgat       180
     caacggctat aaattaaagg aagactgatc acagtcttta attcataatg cctaagcggg       240
     atgccccgtg gcgcctgatg gcgggaactt caaaggtaag ccgctcctcc aatttctccg       300
     cccgtggagg cccaaagatt aacaaggcct ccgaatgggt taacaggccg atgtacagga       360
     agcccaggat atacaggact ctgagaactc ctgatgttcc cagaggctgt gaagggcctt       420
     gtaaggtcca gtcgtacgag cagcgacatg acatctccca tgtcggcaag gtgatgtgca       480
     tttctgatgt gacacgtggt aacggtatta cccaccgtgt cggtaagcgt ttttgtgtta       540
     agtctgtgta tattataggt aagatatgga tggatgagaa tatcaagctc aagaatcaca       600
     cgaatagtgt gatgttttgg ttggtcagag atcgtagacc gtatggcacc ccaatggatt       660
     tcggccaagt gttcaacatg ttcgacaacg agcctagtac tgccaccgtg aagaacgatc       720
     tccgtgatcg ttatcaagtt atgcataagt tctacgccaa ggtcactggt ggtcaatatg       780
     ccagcaacga gcaggctctg gtcaagaggt tctggaaggt taacaatcat gtggtgtata       840
     accaccagga agctggcaag tatgagaatc acacggagaa tgctctgtta ctgtatatgg       900
     catgtactca tgcctctaac cctgtgtacg caacgctaaa gattcgaatc tatttttacg       960
     attcgatcac gaattaataa aatttgaatt ttattgaatg attctccagt acatgattta      1020
     cataaggcct gttcgtcgcg aaacgaacag ctctaataac attattaatt gatattacac      1080
     ctaattgatc taaatacatc atgactaaat gcctaaatct atgtaaatat gtcatcccag      1140
     aagccttcac tgatgtcgtc cagacttgga agttcaggaa tgccttgtgg agacccaacg      1200
     ctctcctgag gttgtggttg aatcgtatct ggatgtgata cactctggtc cctgtgaaca      1260
     ggatgtcttc tacatggtag atcttgaaat ataggggatt tgttatctcc cagatataca      1320
     cgccattctc tgcttgagga gcagtgatga actcccctgt gcgtgaatcc atggctgtgg      1380
     cagttgatgt ggacgtatat ggagcagccg caatttaggt cgatccttct acggcgagtt      1440
     gccctcttct tcgccgctct gtgctgaacc ttgatagaga ggggctgtga gggtgacgaa      1500
     gatagcatta tggatggtcc agttctttag acctgagttt tcctctttgt cgaggaacat      1560
     tttatagctg gaaccctcac ctggattgca gagcacgatt gatgggatac cacctttaat      1620
     ttgaactggc tttccatatt tacaatttga ttgccagtct ttttgggccc caatcaactc      1680
     tttccagtgc tttagcttta ggtaatgcgg agggacgtca tcaatgacgt tataatccac      1740
     ttcgttcgag taaaccctgg aaatgaaatc caggtgtcca ctgagataat tatggcttcc      1800
     taaagctctg gcccacatcg ttttccccgt ccgactatca ccttcgatga tgatactcac      1860
     aggcctctct ggccgcgcag cggagacgac aagcccaaaa tagtcatcag cccaagactg      1920
     catctcgtcc ggaacgttag tgaaagaaga gaggggaaac ggaggagtcc atggctccgg      1980
     agcctttttg aaaattctat ccaggttact ggataggtta tggtactgga agaggaactt      2040
     ttccggcatc ttttctttga taatcatcat cgcctcctcc tttgttccag catttaacgc      2100
     ttcggcggct gcgacgttag cagtctgttg acctcctcta gcacttcttc cgtcgatctg      2160
     gaacgtcccc cattcgattg tatcaccatc tttctcgacg taggacttga cgtcggagct      2220
     ggatttagca ccctgtatgt ttggatggaa atgtgttgac ctggatgggg ataccaagtc      2280
     gaacagtctg ctatttgtgc agttgaactt cccttcgaac tgaatgagaa cgtggagatg      2340
     tggctgccca tcttcgtgta gttctcttgc aaccttgatg aatttcttgt tgacctgcgt      2400
     tcggataacc ctaatttgtt taagagcttc ctctttagga agagagcact gaggatatgt      2460
     aagaaaataa tttttagctt taatagagaa agaccccttt cgtggcattt ttgtaaatat      2520
     aggtatgtac ccccaattgc tctcgcctcc aaaactctca tgaattgggg gaactggggg      2580
     aacttatata tgagaagttc ctaaggttag atctgacacg tggcggccat ccgctataat      2640
     att                                                                    2643
//