ID   JX871369; SV 1; circular; genomic DNA; STD; VRL; 2657 BP.
XX
AC   JX871369;
XX
DT   04-FEB-2013 (Rel. 115, Created)
DT   04-FEB-2013 (Rel. 115, Last updated, Version 1)
XX
DE   Sida yellow mosaic virus isolate BR:Vic1:10 segment DNA-A, complete
DE   sequence.
XX
KW   .
XX
OS   Sida yellow mosaic virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2657
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   "Further molecular characterization of weed-associated begomoviruses in
RT   Brazil with an emphasis on Sida spp.";
RL   Unpublished.
XX
RN   [2]
RP   1-2657
RA   Tavares S.S., Ramos-Sobrinho R., Gonzales-Aguilera J., Lima G.S.A.,
RA   Assuncao I.P., Zerbini F.M.;
RT   ;
RL   Submitted (26-SEP-2012) to the INSDC.
RL   Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P.H. Rolfs, s/n,
RL   Vicosa, Minas Gerais 36570-000, Brazil
XX
DR   MD5; feced49f4bc3b95f04d072c4914ad879.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAman6.0 v. 6.0
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2657
FT                   /organism="Sida yellow mosaic virus"
FT                   /segment="DNA-A"
FT                   /host="Sida santaremensis"
FT                   /isolate="BR:Vic1:10"
FT                   /mol_type="genomic DNA"
FT                   /country="Brazil"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:191463"
FT   CDS             253..1008
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:L7YFF1"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:L7YFF1"
FT                   /protein_id="AGD98547.1"
FT                   /translation="MPKRDPSWRQMAGTSKVSRSSNFSPRGGGGPKPTRAFEWVNRPMY
FT                   RKPRIYRTIRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRFQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   CDS             complement(1005..1403)
FT                   /codon_start=1
FT                   /product="replication-enhancer protein"
FT                   /note="REN"
FT                   /db_xref="GOA:L7YD66"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:L7YD66"
FT                   /protein_id="AGD98548.1"
FT                   /translation="MDSRTGELITVPQAENGVYIWEITNPLYFKIYHVEDLLYTTTRVY
FT                   HVQIRFNHNLRRALGLHKAFLNFQVWTTSLTASGTTYLIRFRQLVMMYLDQLGVITLNN
FT                   VLRAVYFATDRSYVRYVLENHEIKFKLY"
FT   CDS             complement(1150..1539)
FT                   /codon_start=1
FT                   /product="transactivating protein"
FT                   /note="TRAP"
FT                   /db_xref="GOA:L7Y7Z1"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:L7Y7Z1"
FT                   /protein_id="AGD98549.1"
FT                   /translation="MLNSSSSTPPSIKPRHRAAKRRGTRRRRIDLACGCSIYVHISCSN
FT                   NGFTHRGTHHCASSREWRLYLGDNKSPVFQDIPRRGPVVHDDQSVPRTDTVQPQPQESI
FT                   GSPQGIPELPSLDDISDSFWNDLFD"
FT   CDS             complement(1460..2536)
FT                   /codon_start=1
FT                   /product="replication-associated protein"
FT                   /note="REP"
FT                   /db_xref="GOA:L7YDY8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:L7YDY8"
FT                   /protein_id="AGD98550.1"
FT                   /translation="MPSPRAFRVNSKNYFLTYPKCSLTKEEALSQLKELNTPTSKKFIR
FT                   VSRELHEDGSPHLHVLIQFEGKYNCKNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKKYV
FT                   EKDGDFIDFGVFQIDPRSARGGCQTANDTYAKVLNAQSAEQALQILKEEQPRDYVLHLD
FT                   KVQTHVQKLFKKAPEPWVPPFQLSSFTNVPDEMQEWADDYFGRGSAARPLRPMSLIVEG
FT                   DSRTGKTMWARALGPHNYLSGHLDFNNRVYSNEVEYNVIDDVTPQYLKLKHWKELIGAQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGVSYKEFLDKEENAALKSWTLHNAKFIFLD
FT                   SPLYQTTTQSGEEERNSP"
FT   CDS             complement(2122..2379)
FT                   /codon_start=1
FT                   /product="AC4 protein"
FT                   /note="AC4"
FT                   /db_xref="InterPro:IPR002488"
FT                   /db_xref="UniProtKB/TrEMBL:L7YC60"
FT                   /protein_id="AGD98551.1"
FT                   /translation="MGALTSMCLSSSKGNTTARTTGSSTSSPLPGQHISIRTFRELRAR
FT                   QTLKNTWRKTETSLILEFSKSIHDQLEEVAKLPTIRMRKF"
XX
SQ   Sequence 2657 BP; 665 A; 622 C; 621 G; 749 T; 0 other;
     accggatggc cgcgcgattt tccccccccc cctcacgtgg cgctctggtg gccgcccgat        60
     ctccctcccc gctcccgagg agacccccct gctcgcgcga tgttctcctt taattcaaat       120
     taaaggattt aacttttgtc tgaccaatta tagtgcgcct gaggagctta gataactgtg       180
     ttaatacttg gtccctaagt tttatggccc ctataaaact aaagcaagca tgacgtcagt       240
     ctttaattcg aaatgcctaa gcgggatccc tcatggcgcc agatggcggg aacctcaaag       300
     gtaagccgct cttctaattt ctcacctcgt ggaggtggag gcccaaaacc cacaagggcc       360
     tttgaatggg ttaacaggcc catgtacagg aagcccagga tatatcggac gatccgaacg       420
     cctgatgttc ctagaggctg tgaagggccc tgtaaggtcc agtcttacga gcaacgtcac       480
     gatatctccc atgttgggaa ggtgatgtgt atatctgatg tgacacgcgg taacggtatt       540
     actcaccgtg tcggtaagcg tttttgtgtt aagtctgtct acattttagg gaagatatgg       600
     atggacgaga acatcaagct caaaaaccac acgaacagtg tcatgttctg gttggtcaga       660
     gaccgtagac cgtatggcac gccaatggat ttcggccaag tgttcaacat gtttgacaac       720
     gagcccagca ctgcaaccgt gaagaacgat cttcgtgatc gtttccaggt catgcacaag       780
     ttctatgcca aggtcacggg tggacagtat gccagcaatg agcaggcgct ggtcaagcgg       840
     ttctggaagg tcaacaatca tgtggtctac aaccaccagg aggctggcaa gtacgagaat       900
     cacacggaga acgcattact attgtatatg gcatgtactc atgcatctaa ccctgtatac       960
     gcaacgctga agattcgaat ctatttctac gattcgatca cgaattaata aagcttgaat      1020
     tttatttcat gattttccag tacatatctg acatacgatc tgtcagttgc gaaataaaca      1080
     gctctaagta cattattaag cgtaataacg cctaattggt ctaaatacat catgactaac      1140
     tgtctaaacc taatcaaata agtcgttcca gaagctgtca gagatgtcgt ccagacttgg      1200
     aagttcagga atgccttgtg gagacccaat gctctcctga ggttgtggtt gaaccgtatc      1260
     tgtacgtggt acactctggt cgtcgtgtac aacaggtcct ctacgtggta tatcttgaaa      1320
     tacaggggat ttgttatctc ccagatatag acgccattct ctgcttgagg cacagtgatg      1380
     agttccccgg tgcgtgaatc cattgttact gcagctgatg tggacgtata tggagcaccc      1440
     acacgctaga tcaatccttc tacggcgagt tcctctcctc ttcgccgctc tgtgtcgtgg      1500
     tttgatagag gggggagtcg aggaagatga atttagcatt gtggagtgtc cacgacttta      1560
     gagctgcatt ttcctctttg tctaggaact ctttataact gactccctcc ccaggattgc      1620
     agagcacgat tgatgggatt ccacctttaa tttgaactgg ctttccgtac ttacaatttg      1680
     actgccagtc tttttgagca ccaatcagct ccttccagtg ctttaacttt agatattgcg      1740
     gagtgacatc atcaatgacg ttatactcca cttcgtttga gtaaacccta ttattgaagt      1800
     ccaggtgtcc acttaagtaa ttatgtgggc ctaacgcacg agcccacatc gtcttccctg      1860
     tccttgaatc accttcaact atcaaactca taggtctcaa tggccgcgca gcggaacccc      1920
     tcccaaaata atcatccgcc cactcttgca tctcgtcggg aacgttagtg aaggaggaga      1980
     gttgaaacgg aggaacccac ggctccggag cctttttgaa taacttctgg acatgtgttt      2040
     gtactttatc cagatgtaat acgtaatccc tgggttgctc ttctttcaaa atctgcaatg      2100
     cttgttctgc agattgagca tttagaactt tcgcatacgt atcgttggca gtttggcaac      2160
     ctcctctagc tgatcgtgga tcgatttgga aaactccaaa atcaatgaag tctccgtctt      2220
     tctccacgta ttttttaacg tctgacgagc tcttagctcc ctgaatgttc ggatggaaat      2280
     gtgttgacct ggaaggggag acgaggtcga agaacctgtt gttcttgcag ttgtatttcc      2340
     cttcgaactg gataagcaca tggaggtgag ggctcccatc ttcgtgcaat tcccttgaaa      2400
     cacggatgaa tttcttactg gtaggggtgt tcaactcttt caattgggaa agtgcttcct      2460
     ctttggtcaa ggagcacttg ggatatgtaa ggaaatagtt tttggaattt actctaaagg      2520
     cccttggaga aggcatattt gcagaaatga actggggtct cggcaactct ctgatatgaa      2580
     ctggggactg gggtcttatt tatagcagac tccatataat ttttgatgga cacgtggcgg      2640
     ccatccgcta taatatt                                                     2657
//