ID   JX866659; SV 1; linear; genomic RNA; STD; VRL; 702 BP.
XX
AC   JX866659;
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DT   19-APR-2013 (Rel. 116, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Pepino mosaic virus isolate VFTX12-35 coat protein gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-702
RX   PUBMED; 23587202.
RA   Ling K.S., Li R., Bledsoe M.;
RT   "Pepino mosaic virus genotype shift in North America and development of a
RT   loop-mediated isothermal amplification for rapid genotype identification";
RL   Virol J 10(1):117-117(2013).
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RN   [2]
RP   1-702
RA   Ling K.-S., Li R., Bledsoe M.;
RT   ;
RL   Submitted (23-SEP-2012) to the INSDC.
RL   Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah
RL   Highway, Charleston, SC 29414, USA
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DR   MD5; 517e89e5b2a6166a73dc8f29a928d35c.
DR   EuropePMC; PMC3639891; 23587202.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. Lasergene10
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..702
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="VFTX12-35"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:112229"
FT   CDS             1..702
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:M9P8V3"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:M9P8V3"
FT                   /protein_id="AFZ62559.1"
FT                   /translation="MENQPTSEVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKYVSTV
FT                   TSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSNPALS
FT                   RRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFDFFDG
FT                   VTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHMGGAN
FT                   TMYAIDAPPEL"
XX
SQ   Sequence 702 BP; 191 A; 187 C; 144 G; 180 T; 0 other;
     atggaaaacc aacctacatc agaagtacca ccaactgctg ctcaagctgg tgcccagagc        60
     ccagccgact tctcaaatcc taatacagct ccttccctaa gtgatttgaa gaagatcaaa       120
     tacgtgtcaa ctgtcacttc agttgccact cctgctgaaa ttgaggccct tggcaagatc       180
     tttactgcca tgggtttagc agccaatgag accggacctg ccatgtggga cctcgctcgt       240
     gcttatgctg atgtgcaaag ttcaaaatct gcacaactta taggtgccac accatccaac       300
     cctgctttgt ctagacgtgc acttgctgca cagtttgatc gtatcaatat cacacccaga       360
     caattctgca tgtattttgc aaaaattgtt tggaacatac tgttagacag caatgtgcca       420
     cctgccaact gggcaaaatt gggctatcag gaagatacca agtttgctgc ttttgacttc       480
     tttgatggag tcacaaatcc agctagtcta cagcctgctg atggcctaat caggcagccc       540
     aatgaaaaag agcttgctgc tcactcggtt gctaaatatg gtgcccttgc ccgccagaaa       600
     atatccactg gtaactacat caccaccctt ggtgaagtta cacgtggtca catgggcggc       660
     gctaacacta tgtacgcaat tgatgcacct cctgaacttt aa                          702
//