Dbfetch

Dbfetch

ID   JX866655; SV 1; linear; genomic RNA; STD; VRL; 714 BP.
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AC   JX866655;
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DT   19-APR-2013 (Rel. 116, Created)
DT   19-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Pepino mosaic virus isolate VFTX12-30 coat protein gene, complete cds.
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KW   .
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OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
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RN   [1]
RC   Publication Status: Online-Only
RP   1-714
RX   PUBMED; 23587202.
RA   Ling K.S., Li R., Bledsoe M.;
RT   "Pepino mosaic virus genotype shift in North America and development of a
RT   loop-mediated isothermal amplification for rapid genotype identification";
RL   Virol J 10(1):117-117(2013).
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RN   [2]
RP   1-714
RA   Ling K.-S., Li R., Bledsoe M.;
RT   ;
RL   Submitted (23-SEP-2012) to the INSDC.
RL   Virology Laboratory, USDA-ARS, U.S. Vegetable Laboratory, 2700 Savannah
RL   Highway, Charleston, SC 29414, USA
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DR   MD5; 9776723c250b77c0270745b4e2bcfda6.
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNASTAR v. Lasergene10
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..714
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="VFTX12-30"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:112229"
FT   CDS             1..714
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:M9P8U7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:M9P8U7"
FT                   /protein_id="AFZ62555.1"
FT                   /translation="MENQPTASNPSEVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
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SQ   Sequence 714 BP; 194 A; 192 C; 145 G; 183 T; 0 other;
     atggaaaacc aacctacagc ttctaaccca tcagaagtac caccaactgc tgctcaagct        60
     ggtgcccaga gcccagccga cttctcaaat cctaatacag ctccttccct aagtgatttg       120
     aagaagatca aatacgtgtc aactgtcact tcagttgcca ctcctgctga aattgaggcc       180
     cttggcaaga tctttactgc catgggttta gcagccaatg agaccggacc tgccatgtgg       240
     gacctcgctc gtgcttatgc tgatgtgcaa agttcaaaat ctgcacaact tataggtgcc       300
     acaccatcca accctgcttt gtctagacgt gcacttgctg cacagtttga tcgtatcaat       360
     atcacaccca gacaattctg catgtatttt gcaaaaattg tttggaacat actgttagac       420
     agcaatgtgc cacctgccaa ctgggcaaaa ttgggctatc aggaagatac caagtttgct       480
     gcttttgact tctttgatgg agtcacaaat ccagctagtc tacagcctgc tgatggccta       540
     atcaggcagc ccaatgaaaa agagcttgct gctcactcgg ttgctaaata tggtgccctt       600
     gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt tacacgtggt       660
     cacatgggcg gcgctaacac tatgtacgca attgatgcac ctcctgaact ttaa             714
//