ID   JX865782; SV 1; linear; genomic RNA; STD; VRL; 1616 BP.
XX
AC   JX865782;
XX
DT   18-NOV-2012 (Rel. 114, Created)
DT   26-SEP-2013 (Rel. 118, Last updated, Version 2)
XX
DE   Nerine yellow stripe virus isolate US polyprotein gene, partial cds.
XX
KW   .
XX
OS   Nerine yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1616
RX   DOI; .1094/PDIS-11-12-1042-PDN.
RX   PUBMED; 30722129.
RA   Guaragna M.A., Lamborn J., Groth-Helms D., Mollov D., Lockhart B.,
RA   van Schadewijk T., Hammond J., Jordan R.;
RT   "First Report of Nerine yellow stripe virus in Amaryllis in the United
RT   States";
RL   Plant Dis. 97(10):1389-1389(2013).
XX
RN   [2]
RP   1-1616
RA   Jordan R., Guaragna M.A.;
RT   ;
RL   Submitted (24-SEP-2012) to the INSDC.
RL   Floral & Nursery Plants Research Unit, US National Arboretum, ARS, USDA,
RL   10300 Baltimore Ave, Beltsville, MD 20705, USA
XX
DR   MD5; 8769cd424ca9d541e87a8c408cf6642c.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Geneious Pro v. 5.6
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1616
FT                   /organism="Nerine yellow stripe virus"
FT                   /host="Amaryllis belladonna"
FT                   /isolate="US"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /isolation_source="diseased plant material"
FT                   /collection_date="Jan-2011"
FT                   /db_xref="taxon:424679"
FT   CDS             <1..1437
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="encodes nuclear inclusion body and coat protein"
FT                   /db_xref="GOA:K7W5U4"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:K7W5U4"
FT                   /protein_id="AFW90658.1"
FT                   /translation="TTGSGNNSGQPSTVVDNTLMVIIAMQYSLLLNGIELQQQDSVCKY
FT                   FANGDDLLIAVEPSFATKLLDTFSDSFKQLGLNYDFSNRVTNKEELMFMSHKGLLINDL
FT                   YIPKLERERIVSILEWDKSSEPEQRLEAICASMIEAWGYEDLLHEIRKFYAWVLEQAPY
FT                   SELARNGKAPYLAETALRHLYTNSETKNGELLRYIEAFQAEVTFEEERIDVVFQADETI
FT                   NAGTDVARQQQSQAAVVPDRDINVGTSGQSVLIQTKIFPKKLRIMKAKGKATLNLEHLL
FT                   KYKPIQEDLFNTKASQQQFDNWHSKVQESYEVDDKQMEILLNGLIVWCIENGTSSELKG
FT                   TWRMDFDDQQVEYDIQPVIQHSQPTFRQIMRHFSKIAEAYIAMRNQEERYMPRYALQRG
FT                   LTDISLARYSFDFYDTTAATPQRAREAVAQMKAAAVRGKETRLFSLDGNVSVNTENTER
FT                   HTVEDVTQDMHSLLGVRGIK"
FT   mat_peptide     652..1434
FT                   /product="coat protein"
FT   3'UTR           1438..1616
XX
SQ   Sequence 1616 BP; 544 A; 281 C; 371 G; 420 T; 0 other;
     accacaggat ccgggaacaa tagtggtcag ccctcaacag tggtggacaa tacacttatg        60
     gttataatag ctatgcaata ctctctttta ctcaatggga ttgaattaca acaacaggac       120
     tctgtgtgta aatactttgc aaatggtgat gatctgttga tagctgtaga acctagtttc       180
     gccacaaaat tgctggacac tttcagtgat agttttaagc aactgggtct gaattatgac       240
     ttttcaaaca gagtcacgaa taaagaagag ttgatgttca tgtctcacaa gggtttgttg       300
     ataaatgatt tgtatatacc aaaacttgag cgagaacgga ttgtgtccat attagagtgg       360
     gataaaagtt cagaaccaga acaaaggttg gaagcgattt gtgcatcaat gatcgaggct       420
     tggggttatg aagacttgtt gcatgagata cgtaagtttt acgcttgggt cctcgagcaa       480
     gcaccatact cagagttagc gaggaatggc aaagcaccgt atttggcaga aacagcctta       540
     cgacatttgt acacaaactc tgagacaaag aacggagagt tgctacgata catagaagct       600
     tttcaagctg aagtaacttt cgaggaagag aggatcgatg tggtgtttca agctgatgaa       660
     actatcaatg ctggaaccga tgtggcaaga caacagcaat ctcaagcagc agttgttcct       720
     gaccgtgata taaatgtagg gacttccggt caaagtgtgc taatccaaac aaaaatcttt       780
     ccaaagaaac ttcggataat gaaagcaaaa ggaaaagcaa cactcaatct tgaacatctc       840
     ttaaagtaca agccaataca ggaagacttg ttcaacacaa aagcaagtca gcaacaattc       900
     gacaactggc actcaaaggt acaagaatcg tatgaagttg atgacaaaca aatggaaata       960
     ttgctgaatg gtctaattgt ttggtgtata gagaatggaa cttcttctga gctgaaaggc      1020
     acatggagaa tggactttga tgatcagcaa gttgagtatg acattcaacc agtgatacaa      1080
     catagccagc caacttttcg tcaaataatg agacacttta gtaagatagc tgaagcgtat      1140
     atagcaatgc gaaaccagga agaacgttat atgccaaggt atgcgcttca gaggggcctc      1200
     actgatataa gcctagcacg atatagcttt gatttctatg acacaacagc tgcaactccg      1260
     cagcgagctc gggaagctgt agcacaaatg aaagcggcag ctgtgcgtgg aaaggaaaca      1320
     agactatttt cattagatgg gaatgttagt gtaaacactg aaaacactga gaggcacact      1380
     gttgaagatg tcactcagga tatgcactca cttcttggtg tgagaggcat aaagtgaata      1440
     agtggggagt actttgaatt ctataggtaa ttaagggtct tacttatcta tttgtatcca      1500
     gagttcctgt agaattggcc accaaaatga tttcgtccat tgtagtgtgg ttataccacc      1560
     tttatcaaag gattaaatta tataattgat ggggagttct ataaggagac aaaaaa          1616
//