ID JX865633; SV 1; circular; genomic DNA; STD; VRL; 2593 BP. XX AC JX865633; XX DT 19-DEC-2012 (Rel. 115, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tomato severe rugose virus isolate BR:Vic20:10 segment DNA-A, complete DE sequence. XX KW . XX OS Tomato severe rugose virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2593 RA Gonzalez-Aguilera J., Tavares S.S., Sobrinho R.R., Xavier C.A.D., RA Duenas-Hurtado F., Lara-Rodrigues R.M., da Silva D.J.H., Zerbini F.M.; RT "Genetic structure of a Brazilian population of the begomovirus Tomato RT severe rugose virus (ToSRV)"; RL Trop Plant Pathol 37(5):346-353(2012). XX RN [2] RP 1-2593 RA Gonzalez-Aguilera J., Tavares S.S., Ramos-Sobrinho R., Xavier C.A.D., RA Duenas-Hurtado F., Lara-Rodrigues R.M., Silva D.J.H., Zerbini F.M.; RT ; RL Submitted (25-SEP-2012) to the INSDC. RL Dep. de Fitopatologia, Universidade Federal de Vicosa, Av. P. H. Rolfs, RL s/n, Vicosa, Minas Gerais 36570-000, Brazil XX DR MD5; 9041e0fabfae6b01ea1b4d45184bb011. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMan v. 6.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2593 FT /organism="Tomato severe rugose virus" FT /segment="DNA-A" FT /host="Solanum lycopersicum" FT /isolate="BR:Vic20:10" FT /mol_type="genomic DNA" FT /country="Brazil" FT /db_xref="taxon:158463" FT CDS 171..926 FT /codon_start=1 FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:L0CK40" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:L0CK40" FT /protein_id="AGA16409.1" FT /translation="MPKRDAPWRLTAGTSKVSRSVNFSPRAGYGPKYNKAAEWVNRPMY FT RKPRIYRTLRGPDVPRGCEGPCKVQSYESRHDVSHVGKVICVSDVTRGNGITHRVGKRF FT CVKSVYILGKVWMDESIKCTNHTNSVMFWGVRDRSLYETPMYFGEVFHMYDNESHSATV FT KNDLGDRLQVMHKLYAKVTGGQYASNEQALGKPFGKFNNQVVSNHQEAGKYENHTENPF FT LLYMAGSHASNPVYVTSKIRIYFYDSITC" FT CDS complement(923..1321) FT /codon_start=1 FT /product="REN" FT /note="replication-enhancer protein" FT /db_xref="GOA:L0CMB9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:L0CMB9" FT /protein_id="AGA16411.1" FT /translation="MDSRTGELITARQAENGVYIWEISNPLYFKINRVEDPLYTASRVY FT HVQIRLNHNLMRALHLHKSFLNFQIWTTSLTASGTTYLTRFKYLVLLYLDRLGVISINN FT VIRAVRFATNKSYVNAVLENHSIKFKFY" FT CDS complement(1068..1457) FT /codon_start=1 FT /product="TRAP" FT /note="transactivating protein" FT /db_xref="GOA:L0CKE0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:L0CKE0" FT /protein_id="AGA16407.1" FT /translation="MRNSSSLTPPSIKVQHRAAKKRGIRRRRIDIECGCSIYVHIDCRG FT HGFTHRGTHHCTSGREWRLYLGDIKSPLFQDKQSGGSIVHREQSLPRPNTVKPQPDESI FT ASPQELPQLPDMDDFTDSFWDDIFN" FT CDS complement(1399..2457) FT /codon_start=1 FT /product="REP" FT /note="replication-associated protein" FT /db_xref="GOA:K7WJK4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WJK4" FT /protein_id="AGA16410.1" FT /translation="MPSAPKRFQIKAKNYFLTYPKCSLSKEEALSQLKTLNTPTNKKFI FT KVCRELHENGEPHLHVLLQFEGNYCCQNQRFFDLVSPTRSTHFHPNIQRAKSSSDVKSY FT VDKDGDTIEWGEFQIDGRSARGGCQTANDAAAEALNAPSKDVALQIIREKLPEKFLFQF FT HNLNSNLDRIFTRAPEPWAPTFPLSSFTTVPREMQAWADDYFGRGAAARPERPISIIIE FT GDSRTGKTMWARALGAHNYLSGHLDFNPRVYSNHVEYNVIDDIAPHYLKLKHWKELLGA FT QKDWQSNCKYGKPVQIKGGIPCIVLCNPGEGASYKCFLDKEENASLNNWTKHNAKFVFL FT NTPLYQGTTQSC" FT CDS complement(2040..2303) FT /codon_start=1 FT /product="AC4" FT /note="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WM42" FT /protein_id="AGA16408.1" FT /translation="MKMGSLISTCFFNLRATTAAKINDSSTWSPQQGQHISIRTFRELS FT HRPTSNPMSTRTEILSSGGNSKSTEEVQEAVARQLTTLPQKP" XX SQ Sequence 2593 BP; 660 A; 523 C; 606 G; 804 T; 0 other; accggatggc cgcgcgattt ttcacccctt tagtttcaat taaagtaaag tgattgtctg 60 tggcccaatc atattgggcc tgtcgagctt agatatttgt aacaacttaa ggcccaagtt 120 gttaaacggc tataaattga acatacactt tactttttct ttaattcaaa atgcctaagc 180 gtgatgcccc atggcgttta acggcgggaa cttcaaaggt ttcccgctct gtcaattttt 240 ctccccgtgc aggatatgga cccaaatata acaaggccgc tgagtgggtg aacaggccca 300 tgtacaggaa gcccaggatc taccgtactt tgagaggccc agatgttcct agaggctgtg 360 aagggccttg taaggttcag tcttacgagt ctcgtcatga tgtttcccat gtcgggaagg 420 tgatttgtgt gtctgacgtt acacgtggta acggtattac tcaccgtgtt ggtaagcgtt 480 tctgcgtgaa gtctgtatat attttaggga aggtatggat ggacgagagc atcaagtgta 540 cgaatcacac aaatagtgtg atgttctggg gggtgagaga tcggagtctt tatgagacgc 600 ctatgtattt tggagaggtg tttcacatgt atgacaacga gtctcactct gcaactgtta 660 agaacgatct tggggatcgt ttacaggtca tgcacaagtt atatgccaag gttactggtg 720 gacagtatgc cagtaatgag caggcattag ggaagccttt tgggaagttc aacaatcagg 780 tagtttcaaa ccatcaggag gcaggaaaat acgagaatca tactgagaac ccctttctat 840 tgtatatggc aggtagtcat gcctctaacc ccgtgtatgt tacctcgaaa attcggatct 900 atttttatga ttcgattact tgttaataaa atttaaattt tattgaatga ttttcgagta 960 cagcatttac atatgatttg tttgttgcga aacgaacagc tctgattaca ttattaatgg 1020 aaataacgcc taaacgatct agatacaata agactaaata tttaaatcta gttaaatatg 1080 tcgtcccaga agctgtcagt gaagtcgtcc atatctggaa gttgaggaag ctcttgtgga 1140 gatgcaatgc tctcatcagg ttgtggttta accgtatttg gacgtggtag actctgctcg 1200 cggtgtacaa tggatcctcc actctgttta tcttgaaata gaggggattt gatatctccc 1260 aaatatagac gccattctct gcctgacgtg cagtgatgag ttcccctgtg cgtgaatcca 1320 tgtcctctgc agtcgatgtg tacgtaaata gagcacccgc actctatatc aattcgtcgt 1380 ctcctgattc ctcgtttttt agcagctctg tgttgtacct tgatagaggg gggtgttaag 1440 gaagacgaat ttcgcattgt gctttgtcca attatttaga cttgcatttt cttctttgtc 1500 gaggaaacat ttatagctgg ccccctcgcc aggattgcaa agcacgatgc atgggatacc 1560 acctttaatt tgaactggct ttccgtattt gcagtttgat tgccaatcct tttgggcccc 1620 aagcaattct ttccaatgct ttaactttag atagtgcggt gcgatgtcat caatgacgtt 1680 atattcaaca tgatttgaat aaaccctagg attgaaatct aggtgtccac tcaaataatt 1740 atgggcccct aatgcacgtg cccacatcgt ctttcccgtt cgagaatcac cttcaatgat 1800 gatactaata ggtcgttccg gccgcgcagc ggcacctctc ccaaaatagt catctgccca 1860 agcttgcatc tctctcggta cggtagtgaa agaggagagg ggaaacgtag gggcccatgg 1920 ctccggagcc cttgtaaata tcctatctaa attactattt agattgtgaa actgaaataa 1980 gaacttttca ggcagcttct cacggattat ctgcaaggcg acgtctttgg aaggtgcgtt 2040 caaggcttct gcggcagcgt cgttagctgt ctggcaaccg cctcttgcac ttcttccgtc 2100 gatttggaat tccccccact cgatagtatc tccgtccttg tcgacatagg atttgacgtc 2160 ggacgatgac ttagctctct gaatgttcgg atggaaatgt gttgaccttg ttggggagac 2220 caggtcgaag aatcgttgat tttggcagca gtagttgccc tcaaattgaa gaagcacgtg 2280 gagatgaggc tccccatttt catggagctc cctgcaaacc ttgatgaact ttttatttgt 2340 aggagtgttt agggttttta attgggaaag tgcttcttct ttcgataatg agcatttggg 2400 atatgtgagg aaataattct tcgcttttat ttgaaagcgc tttggagctg atggcatatt 2460 tgtaaatatg actcctacta ccaattggta gctgctctaa aactcatatg aattggtagt 2520 tatggtagct cttatatagt agaagttctt tttaaggaga ttgctacacg tggcggccat 2580 ccgttataat att 2593 //