ID JX833565; SV 1; linear; genomic RNA; STD; VRL; 4741 BP. XX AC JX833565; XX DT 26-NOV-2012 (Rel. 114, Created) DT 18-MAY-2020 (Rel. 144, Last updated, Version 4) XX DE Hippeastrum chlorotic spot virus isolate HLS1-2 segment M, complete DE sequence. XX KW . XX OS Hippeastrum chlorotic spot virus OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; OC Hippeastrum chlorotic ringspot orthotospovirus. XX RN [1] RP 1-4741 RX DOI; 10.1007/s00705-013-1756-x. RX PUBMED; 23812614. RA Xu Y., Lou S.G., Li X.L., Zheng Y.X., Wang W.C., Liu Y.T.; RT "The complete S RNA and M RNA nucleotide sequences of a hippeastrum RT chlorotic ringspot virus (HCRV) isolate from Hymenocallis littoralis RT (Jacq.) Salisb in China"; RL Arch. Virol. 158(12):2597-2601(2013). XX RN [2] RP 1-4741 RA Xu Y., Liu Y.T., Wang W.C., Lou S.G.; RT ; RL Submitted (15-SEP-2012) to the INSDC. RL College of Agronomy and Biotechnology, Yunnan Agricultural University, RL Jinhei Road, Kunming, Yunnan 650201, China XX DR MD5; a4376d13f3dfab8a75550a5da1d0552a. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..4741 FT /organism="Hippeastrum chlorotic spot virus" FT /segment="M" FT /host="Hymenocallis littoralis" FT /isolate="HLS1-2" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="18-Oct-2010" FT /db_xref="taxon:2736661" FT gene 48..974 FT /gene="NSm" FT CDS 48..974 FT /codon_start=1 FT /gene="NSm" FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:K7XZL0" FT /protein_id="AFX74695.1" FT /translation="MSRITNVFENLGKSEGKEMIPAIKKAETDNRLVLSRKVTSKDVSD FT AMKKKASTFNGNQYISASDKTVLGSYEGGQSIENSSDDILSRLIVEKSTHLSNWKDDSL FT VGNGEEKVSCTINIIPTWDSKKKYMHISRLIVWVVPTIPDSKGFVKATIIDQNKLTPKE FT KLIIGKQGTLENPLCFVFHLNWSFNKDRNVPKRCMQLNLTSNEKYAKGVSFASVMYSWV FT KNFCDTAIASDSNTCDLIPINRAKAIKSAALIEACKLMIPKGTTGKAIKNQIVSLQKIA FT EKVALEDDADESTEIVEIDIDDPNNQF" FT gene complement(1305..4694) FT /gene="GnGc" FT CDS complement(1305..4694) FT /codon_start=1 FT /gene="GnGc" FT /product="glycoprotein precursor" FT /db_xref="GOA:K7X9M4" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:K7X9M4" FT /protein_id="AFX74696.1" FT /translation="MMNRHYLLLYCLGIYLMFTVTEVFLVNYAEDNEDTKIELKKLKDR FT YKNDDPRDLLEYEITASSTHPSLDSKTPGRISREATTIDPANSKPQESVFSCDSFTKSS FT CMIKGVSDFNAHYQIKISDSVFACLTDSEKIFDSCLFDPEIKRRDFLKMPVVPVLKLEN FT KRVLEVGSKFFFVDSSNNPILSDPASSMLKPTISRLSVRLSGDCVISQVSMSTPYMIKI FT KSNENIGFAVKNIRDPQAVNFQTTSGERSVYFKTQELDGNHFFLCGDKSSFIKKVDIPV FT RNCVSKYTNEPKKIFFCANFSYFKWIFIFLLIAFPVTWMLWKTKNAFSVWYDVLGILTY FT PVLILLNYVWLYFPFRCRLCGNLSFLTHTCSKLCVCNQCEPSKEHAKECYLFSKDTKKW FT KSLSLIDHFQFTINTKISSEFLVFLTKMLIAAILISYIPSSLALSMGKNVCVEKCYYSK FT DLERLTTDKDGSSKNAVDTCECSIGELITETVYRDGTPVSRAATKNNCVLSSSTCLTSL FT NQAKNLFACRNGCNALVALEKIPRVEYSNGYRGTEYSGNLTVLKIANRLRKGFVDNQAD FT VRNLESRVSKELVYFKSLKVDDIPPENLMPRQSLVFSTEVDGKYRYLIEMDIKKETGSV FT FLLNDDSSHIPMEFMIYVKSVGVEYDIRYKYSTAKVDTTVTDYLSTCTGSCNDCRKLKA FT PAGKNDFRVQPTSWWGCEELGCLAINEGAICGHCTNVFDLSTLVNVYQVVQSHVTAEIC FT IKSLNGYDCRKHTDRVPIQTEYYQLDMSVDLHNDFMSTDKLFAINKQQKVLTGSISDLG FT DFSSGAFGHPQINADGTLLSVPAMIPRDHFSWSCSAVGAKSVNIRQCGIFSYNMIYALT FT QSKDFSILSEDQNKLYMTKDFLVGKLKVVIDMPKEMFKKPSSKPVLSETKVSCTGCFKC FT AMGLECDIEYTSDTTFSSRLEIEGCSFKSDQLGSYIGPNKKKFKAYCSDSLKDKSIKMI FT AEDQDELSIELKIDQVDVIDQDTIISYDDKSAHDENIHHADTGLATLWDWIKAPFNWVA FT SFFGSFFDVVRVLLVILAVCVGIYIISYIYNLSFSYYKEKRKRKMEFDLEEVSRSLLTM FT SKRDGEPRRRSPPKTFEFPLEF" XX SQ Sequence 4741 BP; 1549 A; 857 C; 840 G; 1495 T; 0 other; acaattaaat atctaaaaca gcttctgcca agtgattcgt aaccagtatg tctcgcataa 60 ctaacgtgtt tgaaaacctc ggcaaaagtg aaggcaaaga aatgattcct gcaattaaga 120 aagctgaaac agacaacaga ctcgttttga gcaggaaagt gacaagcaaa gatgtgagtg 180 atgccatgaa gaaaaaagct tctacattta atggcaatca atacatctct gcttctgaca 240 aaactgtttt gggttcctat gaaggtggtc aatctataga gaacagttca gatgatatct 300 tgtccaggct tatagtcgag aaaagcactc atctgagtaa ttggaaagat gattctcttg 360 ttggcaatgg agaggaaaaa gtgagctgta caataaatat cattccaaca tgggacagca 420 agaagaaata catgcatata tcaaggctga ttgtgtgggt tgttcccaca ataccggact 480 ctaaaggatt tgtgaaagca acaataatag atcaaaacaa gctgactcct aaagaaaagc 540 taatcattgg caagcaagga acacttgaga accctttgtg ttttgttttc catctgaact 600 ggtcttttaa caaagacaga aatgtaccaa agagatgcat gcagctcaat ctaacgagca 660 atgaaaaata tgcaaaagga gtttcctttg catcagttat gtattcttgg gtgaagaatt 720 tctgtgatac agctatagct tccgacagca acacatgtga tttgattcct atcaatagag 780 ctaaagcaat caaatctgct gctctaattg aagcatgcaa actcatgatc ccgaaaggaa 840 ctacaggaaa ggctataaag aaccagatag tgtctctcca aaaaattgct gagaaagtag 900 cattagaaga tgatgctgat gaaagtacag aaattgtaga gatagatata gatgatccta 960 ataatcaatt ttaaaagaac taaagatctt tcatatgtct atctttatta aataaaatcg 1020 taaaacaaac aaaacaaaaa taaagaagaa aagaacaaaa aaagagaaaa agaaaaaaca 1080 aaaaaagaaa aaaagaagaa aacaaaaaag aaaaagaaaa agaaaaaaca aaaagaaaag 1140 aaaaagaatg tatataaata aggccaaggc caactttggc ctttttaggc tctttttgtt 1200 ttattttatt tctattttat tttattttta attttatttt tattttattt ttttgttttt 1260 gtttcattta tttattttat ctgcatttga atacttcatc tggtctagaa ctctagagga 1320 aattcaaatg tttttggcgg gcttcttctt ctaggttctc catctctctt tgacatagtc 1380 aaaagagatc gactgacttc ttcaaggtcg aactccattt tcctttttct tttttcttta 1440 taataactaa aagataagtt atagatataa ctgattatgt aaattcctac acagacagct 1500 aaaatcacta aaagtaccct cactacatca aagaaactac cgaaaaatga cgctacccaa 1560 ttgaaaggag cttttatcca atcccacaat gtagccaacc ctgtgtcagc atgatgtatg 1620 ttctcgtcat gagcgctctt atcatcataa ctaattatag tgtcttggtc tataacatcc 1680 acttgatcga ttttcagctc aattgacaat tcatcttgat cctctgcaat cattttgatg 1740 cttttatctt ttagactgtc tgaacaatat gccttgaact ttttcttatt aggaccaatg 1800 taactgccta attggtcaga tttaaatgaa caaccttcaa tctccaacct agaagagaat 1860 gtagtgtcag aagtatattc tatgtcacat tctaaaccca tagcacattt aaaacagcct 1920 gtgcagctaa cttttgtttc gctaagcact ggtttgcttg atggtttttt aaacatctct 1980 ttgggcatat caataacaac ttttaatttc cctacaagaa aatctttagt catgtaaagc 2040 ttgttttgat cttcactgag gatagaaaag tcttttgatt gggtcaatgc atatatcata 2100 ttgtaactaa atattccgca ttgccttata ttgactgatt tggcaccaac tgcagaacaa 2160 ctccaagaaa aatgatctcg aggtatcata gctggtactg atagtaaagt tccatctgca 2220 tttatttgag gatgaccaaa agcacctgac gagaagtcac ctaagtctga gatacttcct 2280 gtaagaactt tttgttgctt gttgatggca aacagtttgt cggtgctcat gaagtcatta 2340 tgaagatcca cagacatgtc taactgataa tactcagttt gtattgggac tctatctgtg 2400 tgcttcctgc agtcatatcc attaagagac ttaatgcata tctctgcagt gacatggctt 2460 tgaacaacct gataaacatt aaccagtgtg ctaagatcaa aaacatttgt gcaatgtccg 2520 cagatagcac cttcatttat agcaaggcaa cctagttctt cgcagcccca ccaggatgta 2580 ggttggacac gaaaatcatt tttccctgca ggagctttca actttctaca atcattgcag 2640 ctgcctgtgc aggttgaaag gtaatctgtc actgtcgtgt ccacttttgc tgttgaatat 2700 ttgtatctga tatcatattc tacacctaca cttttaacat aaatcatgaa ttccataggt 2760 atgtgtgagc tgtcatcatt tagcaaaaag acagatccag tctctttctt tatgtccatt 2820 tcgatcaagt atctgtattt cccatcaact tctgttgaga agactaaaga ttgtctaggc 2880 attagatttt ctggaggaat gtcatctacc ttcaagctct tgaagtatac tagttctttg 2940 gaaactctag attctaaatt tctgacatca gcctggttat cgacaaatcc tttcctaagc 3000 ctattagcta ttttcagcac agttaagtta ccagaatatt ctgttcctct gtaaccatta 3060 ctgtattcta ctctaggtat cttttccagt gctactaaag cattgcaacc attcctgcat 3120 gcaaaaagat ttttagcttg attgaggctg gtgaggcatg tagaagatga taaaacacaa 3180 ttgttcttcg tagctgctct agatacagga gtaccgtctc tataaacagt ttctgttatt 3240 agttctccga ttgaacactc acatgtgtct acggcatttt ttgatgagcc atctttgtcg 3300 gtagtcagtc tttcgagatc tttgctataa taacattttt ccacgcaaac attctttccc 3360 atagaaagcg ctaagctgga tggtatgtaa gaaatcaaaa tagcagctat aagcattttt 3420 gtcaagaaaa caagaaattc agagctgatt tttgtgttga tagtgaattg aaagtgatca 3480 atcagagaca aacttttcca tttttttgta tcctttgaga acaaatagca ttctttagca 3540 tgttctttag atggctcaca ttggttgcaa acacataact tggagcatgt gtgagtgagg 3600 aaagacaagt ttccacataa tctacatctg aatggaaagt acaaccatac ataatttaat 3660 aggatgagaa ccggataagt caaaatccct agaacgtcat accaaacaga aaaagcattt 3720 tttgtcttcc agagcatcca tgtgacaggg aaagctatta acaaaaatat gaaaatccat 3780 ttgaagtatg agaaattggc acagaagaaa attttctttg gttcatttgt gtatttagaa 3840 acacaatttc tcactggaat gtctactttc tttataaagc tggatttgtc tccacaaaga 3900 aagaaatggt ttccatctag ttcctgggtt ttgaagtaga cagatctctc accagaagtt 3960 gtttgaaagt taacagcttg aggatctctt atgttcttaa cagcaaatcc tatattttca 4020 ttggatttga ttttaatcat ataaggtgtt gacattgaca cttgacttat gacacagtca 4080 ccagaaagcc taacagaaag tctggagatt gttggcttca gcatgcttga ggcaggatca 4140 gacaggattg gattgttaga tgaatctaca aagaagaact tagagccaac ctcaaggact 4200 ctcttgttct ccaactttag aacaggaaca acaggcattt taaggaagtc tcttcttttg 4260 atctctggat caaacaaaca tgaatcaaat attttctctg agtcagttaa gcaagcaaaa 4320 actgagtcag agatctttat ttggtaatga gcattgaaat cacttacacc tttgatcatg 4380 cagctagatt tagtgaaact gtcacaagaa aaaacacttt cttgtggttt ggaatttgca 4440 ggatcaattg ttgtagcctc tctagaaatc ctacccggag tctttgagtc caaagacggg 4500 tgagtgctag aggctgtaat ttcatactca agaagatctc gtggatcgtc atttttgtat 4560 ctatctttta acttcttcaa ctcaatcttg gtgtcttcgt tgtcttctgc atagttcacc 4620 aggaacactt ctgttacagt gaacatcagg tatataccaa gacagtagag tagtagatag 4680 tgtcgattca tcataggctg cctgtttagg gagagttttt aattattgca ccgattgctc 4740 t 4741 //