ID JX833564; SV 1; linear; genomic RNA; STD; VRL; 2724 BP. XX AC JX833564; XX DT 26-NOV-2012 (Rel. 114, Created) DT 18-MAY-2020 (Rel. 144, Last updated, Version 4) XX DE Hippeastrum chlorotic spot virus isolate HLS1-2 segment S, complete DE sequence. XX KW . XX OS Hippeastrum chlorotic spot virus OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Tospoviridae; Orthotospovirus; OC Hippeastrum chlorotic ringspot orthotospovirus. XX RN [1] RP 1-2724 RX DOI; 10.1007/s00705-013-1756-x. RX PUBMED; 23812614. RA Xu Y., Lou S.G., Li X.L., Zheng Y.X., Wang W.C., Liu Y.T.; RT "The complete S RNA and M RNA nucleotide sequences of a hippeastrum RT chlorotic ringspot virus (HCRV) isolate from Hymenocallis littoralis RT (Jacq.) Salisb in China"; RL Arch. Virol. 158(12):2597-2601(2013). XX RN [2] RP 1-2724 RA Xu Y., Liu Y.T., Wang W.C., Lou S.G.; RT ; RL Submitted (15-SEP-2012) to the INSDC. RL College of Agronomy and Biotechnology, Yunnan Agricultural University, RL Jinhei Road, Kunming, Yunnan 650201, China XX DR MD5; ec874d90f26bf98af0b1e2495babb24b. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2724 FT /organism="Hippeastrum chlorotic spot virus" FT /segment="S" FT /host="Hymenocallis littoralis" FT /isolate="HLS1-2" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="18-Oct-2010" FT /db_xref="taxon:2736661" FT gene 73..1404 FT /gene="NSs" FT CDS 73..1404 FT /codon_start=1 FT /gene="NSs" FT /product="non-structural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:K7XAC0" FT /protein_id="AFX74693.1" FT /translation="MSTVKTTAVEFFSNYGLSCDSRSINDCYRVFSSRGETLMDVFMHS FT TIGIKSAFSITGLGESEDIKTHEAEIIDEHHNYNVFEKFGLDMNFCNHFLEITVKKPSV FT KNYETKFQMHNQIFEPSEQLISYGMGKITEKDFYNCSKISPEDIYPSDWFINEAKKKNF FT YMADISGFSMDWGFSVMGRTTSYWKENMEKTSLVSVKQKSAAFPSVPTNRVLSVSTIKA FT VEIASKIACDKSTILSVRQDLRSDLRTQFRISLPGEYSDTSVARTYLLHQGSKGQYICI FT YARTTMDSPNERTTLIIKIFTQSKPRGFTTTLLPNDHSNCRKMVGASFGIVEQKMTDPN FT YNKIIAHELLSVHTNFALKISKVLQKPVIVYKVYEKELLPKRVEIDGRTFNYQEDIDGN FT VYFLSTTLAILPLSLSVLSYLDSASPPCWKESKGLGHFTVEEIQ" FT gene complement(1848..2672) FT /gene="NP" FT CDS complement(1848..2672) FT /codon_start=1 FT /gene="NP" FT /product="nucleocapsid protein" FT /db_xref="GOA:K7X3L0" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:K7X3L0" FT /protein_id="AFX74694.1" FT /translation="MSTARLSKANVEKLLAGGEADVEIEAEETTGFNFKEFVLANGNVK FT MTFNNGYTILRNRAAIYKMVKAGNFKFQGKPIVVPNATSNPGQEDWTFRRLEGFIRAKM FT FMELLAVENSTEQQKMYEKLCDLPMVNAYGLKPSPRFDATTARVMLTLGGPLPLMASLD FT KFAAAAFPLAYFQNIKKEALGINKFSTYEQLCKIARVMATKEFVFTGTAKEIFEETIKI FT LNDCTPGTTGAASLNKFNEQIKALENVFGKIVDDNEASSSKPRSASKKNQGF" XX SQ Sequence 2724 BP; 880 A; 527 C; 472 G; 845 T; 0 other; agagcaatcg aggtataaac aaataatcat acacagcttg aatcacaata agcaagaaat 60 actaactcag ccatgtctac cgttaaaaca acagcagttg aattcttctc caactacggg 120 ttatcttgcg attcccgttc tatcaatgac tgttacaggg tattctctag cagaggagaa 180 accctcatgg atgtctttat gcactcaact attggcatca aatctgcttt cagtataact 240 ggacttggag aaagtgagga cataaagact catgaagcag aaatcattga tgaacatcac 300 aattataatg tctttgagaa gtttggctta gacatgaatt tctgcaacca ctttttggag 360 ataactgtaa aaaaaccatc tgtaaaaaac tatgagacaa aattccaaat gcacaatcaa 420 atattcgagc cttcagaaca gctgattagc tatggtatgg gtaaaataac agagaaagat 480 ttttacaact gttctaagat ctctcctgaa gacatatacc caagtgattg gtttatcaat 540 gaagctaaga aaaagaactt ttacatggcc gacatctctg ggttcagcat ggactggggt 600 ttttctgtaa tgggaaggac aacatcttac tggaaagaaa acatggaaaa aacatcacta 660 gtttctgtga agcagaaatc agcagctttt ccttcagtgc ctacaaacag agtactatct 720 gtttccacaa tcaaagcggt tgaaatagcc tctaaaattg catgtgataa atcaactatc 780 ctctcagtca ggcaagactt gagatcagat ctaagaactc aattcaggat ctcactgcct 840 ggagaataca gcgatactag tgttgccaga acctacttgc ttcatcaggg cagtaaaggg 900 cagtatatat gcatttatgc aagaactact atggacagtc ctaatgagag aactacattg 960 ataataaaaa tcttcactca aagcaaacca cgtggtttca ccacaacact tcttccgaat 1020 gatcactcca actgtagaaa aatggttgga gctagttttg gcatagttga acaaaaaatg 1080 acagatccta attacaataa aataattgct catgagctat tgtctgtgca cacaaacttt 1140 gctttaaaaa tatcaaaagt tttacaaaag cctgtgatag tgtacaaagt ctatgagaaa 1200 gaactccttc caaagagagt ggaaatagac ggcagaacgt tcaactacca agaagacatt 1260 gatggtaatg tttattttct gtcaacaact ttggcaattt tgcctctatc tctttctgtt 1320 ttgtcttatc tggattctgc ctccccaccc tgttggaagg agtctaaagg tttgggccac 1380 ttcactgtag aggaaatcca gtaaatttaa ttataactag ctttttaaga tattagagtt 1440 atatcaacct aatccactct caatgtatgt aaataaatca tttaaatata agccaataaa 1500 tcaaaaacaa caaaaaaatc aaattttaaa ttaaaaacca aaaaaccaaa aaaaccaaaa 1560 aacccaaaaa aaccaaaaag agccttcggg ccgattgtgg tttccttacc tattacaagc 1620 atcagtaaga aaaccatgat ttgcccgaag gctttttttg ttttttggtt ttttggtttt 1680 tttgggtttt gtttatttat ttatttttat ttcttttatt tattattgtt ttgagttttt 1740 attttgtagt tttatttttt ttaaggtttt ttatgaaaca caataaacac acaaacattt 1800 gcaagctaca taatgcacaa atcatcaacc aagaattaag agatcaatca gaatccttga 1860 ttcttcttag aagcagacct aggttttgaa gaactagctt cattatcatc aacaatttta 1920 ccaaaaacat tctccagagc tttaatctgc tcattgaatt tgttcaatga agcagcacca 1980 gttgtcccgg gagtgcagtc attcagaatt tttatggtct cttcaaaaat ctctttagca 2040 gtcccagtga aaacaaattc ttttgttgcc ataactctgg ctattttaca tagctgctca 2100 taagtagaga atttgttgat gcccagagcc tcttttttaa tattctggaa atatgccagc 2160 gggaatgcag ctgcagcaaa tttgtctaag cttgccatta gggggagagg accacctaat 2220 gttagcatta ctcttgcagt ggttgcatca aatctggggc taggtttcaa gccatatgca 2280 ttgaccatag ggaggtcaca cagtttttca tacatttttt gctgctcagt tgaattctct 2340 acagcaagca gttccataaa cattttggct ctaatgaaac cctccaatct cctgaacgtc 2400 caatcttctt gtccagggtt ggaagtagca ttggggacca caatgggttt cccttggaat 2460 ttaaaattcc ctgctttcac cattttgtaa atggcagctc tatttctcaa aatggtgtaa 2520 ccgttgttaa aagtcatttt cacgttgcca ttagccaata caaattcctt gaagttgaat 2580 cctgtggttt cttcagcttc aatctctaca tctgcttcgc cacctgcaag aagcttctca 2640 acgttcgctt tgctcaacct tgcggtagac atggtgttta cttaggaagc tgcttacttg 2700 gctgaagttg ttcagaattt atgt 2724 //