ID JX683388; SV 2; linear; genomic RNA; STD; VRL; 8117 BP. XX AC JX683388; XX DT 13-JAN-2013 (Rel. 115, Created) DT 28-APR-2015 (Rel. 124, Last updated, Version 2) XX DE Potato virus S isolate RL5 RNA-dependent RNA polymerase gene, partial cds; DE and 12K protein, 7K protein, coat protein, and 11K protein genes, complete DE cds. XX KW . XX OS Potato virus S OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-8117 RA Gutierrez P.A., Marin M., Alzate J.F.; RT "Genome sequencing of an Andean PVS strain infecting Solanum phureja in RT Colombia"; RL Unpublished. XX RN [2] RP 1-8117 RA Gutierrez P.A., Marin M., Alzate J.F.; RT ; RL Submitted (13-SEP-2012) to the INSDC. RL Biosciences, Universidad Nacional de Colombia, Autopista Norte, Cra 65 x RL Calle 64, Medellin, Antioquia 57-4-4309332, Colombia XX RN [3] RC Sequence update by submitter RP 1-8117 RA Gutierrez P.A., Marin M., Alzate J.F.; RT ; RL Submitted (27-APR-2015) to the INSDC. RL Biosciences, Universidad Nacional de Colombia, Autopista Norte, Cra 65 x RL Calle 64, Medellin, Antioquia 57-4-4309332, Colombia XX DR MD5; 22fa3ad323c86da26c6f2b0ba2361c7e. DR EuropePMC; PMC5742290; 29204987. XX CC On Apr 27, 2015 this sequence version replaced gi:440552841. XX FH Key Location/Qualifiers FH FT source 1..8117 FT /organism="Potato virus S" FT /host="Solanum phureja" FT /isolate="RL5" FT /mol_type="genomic RNA" FT /country="Colombia" FT /collection_date="Jun-2011" FT /db_xref="taxon:12169" FT CDS <1..5601 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:L7RZN1" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR003323" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008041" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:L7RZN1" FT /protein_id="AGC11979.1" FT /translation="KRVKQMSMIQAINRYVSSADKLRYGNEFVIKFGTASTELKRHHGY FT SLDPALRDLLPNIKRDSNLFFHDEMHYWEKNQLINFLEHCRPNTCLCTIVYPTEIFVGA FT RRSLNPWAYEFEIKRDKLLFYPDGVRSEGYEQPVNCGYLLRTRKILLRDGTVYSVDLVC FT SKFSHHLVAITKGDLITPAYRSFGPFEAIKSAGLQGISKGRPKFYPVPCHMISRLYRYL FT RSLKKPDKQSAMAKFSQMCPEPSGDMIRFVEELSDLIINTGTLRVMIDADLCKNFFGNL FT GLALPAALASKIRSTRAVSLEAFIASLEPLVVDCELQTVSWAVPLLPLLFSETSDEPPE FT DAIETMEQRWEGGVGLLRDRIPAPYRGDMWCETTRQMSYWRIEHQKVKFLRGLMRLYVD FT SMCTEGLPITTTFEAYIAKLMSCCSLLGLVLIKCITTAEYAEVSLIVESTRLLDVLFAI FT GDLRWFRATRHSRYNAKFLDETADWARYKSEFECATYERPRGLGHTGYLQTSVYSFCGV FT STRWSFNSNYLGEEDLGIDTYGCGIMANSENQPSTALEVAPQGLAMGDFLSCACEARLS FT IRVLAFPTEHGFHLERRRSTGRATWYCKSHLDYVHKDTHYENQGWPTWLSKWMELHDID FT EAYYDSMFAQELPAGGTLEHEVSAEGLFAPDSRIVIAEVEGESLVSIECALGKKTRLLR FT LGEYLEMPELCRSSHRLSMHCCTSSGVTFTFRQISSLDSAVGIDVGQSLVPPPPVVSKA FT SKANPNDVHHTREGVVVHASGKCPNSEKFHRVPNAGGGDCFWLAISHFTGVSVHDMKQG FT LQQLTWESEAFDFELSQQLKPKAWAEEEAIIATSKQYRYRIVVLSADKEQTVTYSPKSE FT AVQSMVLYHAGAHFEAALPRNDCVLVAVASVLRRRIEEVLSILGAQLGSEFLQDVLKGE FT GINRDQLAVVFKLFDICAHIHAESEEFIVNPEGRLHGTFNLSRDHIEHCKSKPIGVTKY FT TSVHDASCEVKPETLSMLKAMCTMLPYSPCKLRAKVLADSLNAGSTGVLCDELFNKVGN FT LLEANEGRLQEGPREVGCLLGTFGAGKSMVFRKVLNNNLGKSILYISPRKHLADSFNEL FT IKAIKQKEGATSVQGFRTFTFERAILKSPQFRPDATIIVDEIQLFPPGYLDLFALLVPG FT GVHIFLVGDPCQSDYDSEKDRSLFQAMKSDINLLLDDADYDFNCRSRRFKDKIFEGRLP FT CTMVSIEGEASKFTIVEGVENCKAIHSNAEVCLVSSFDEKKIVQTYFPNSCQCFTFGES FT TGMTYKSGVILITDTSQYTSERRWLTALSRFSHSIAFVNATGGNIQLVTRLYQNRALGR FT FLLRTATVEDLKSLLPGRPNFKEGFEGERIGADEGKREFKLEGDPWLKTMLDLLQKEDQ FT EEVEEAVIELGEEWFRTHLPQCELEGVRARWVEKILAKEVREKRMGLLVSEQFTDEHSK FT QLGKQITNAAERFETIYPRHRAADTVTFIMAVRKRLRFSDPIRESAKLRAAEMYGPFLL FT KEFLKHVPLKPMHNTGMMAEAKFDFEEKKTQKSAATIENHSNRSCRDWLADVGMVFSKS FT QLCTKFDNRFRDAKAAQTIVCFQHSVLCRFAPYMRYIEKKLSEVLPARFYIHSGKGLEE FT LNKWVIESKFEGVCTESDYEAFDASQDQYIVAFELALMRYLGLPNDLIEDYKYIKTHLG FT SKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYKLKGDERICFAGDDMCANRALFIKDT FT HEGFLKKLKLKAKVDRTNRPSFCGWSLCSDGIYKKPQLVFERLCIAKETANLANCIDNY FT AIEVSYAYKLGERIKERMSEEELDAFYNCVRVIIKHKHLLKSEIRSVYEEV" FT CDS 6297..6623 FT /codon_start=1 FT /product="12K protein" FT /db_xref="GOA:I1ZEE9" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:I1ZEE9" FT /protein_id="AGC11975.1" FT /translation="MPLTPPPNYTGLYIAAALGVSLAAVVALFTRSTLPIVGDSQHNLP FT HGGRYRDGTKAIDYFKPAKLNSVEPGNYWYTQPWLLVLLLVALICLSGRHAQCCPRCNR FT VHSA" FT CDS 6587..6787 FT /codon_start=1 FT /product="7K protein" FT /db_xref="GOA:L7S3F5" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:L7S3F5" FT /protein_id="AGC11976.1" FT /translation="MLPKVQSSAQCLIAFALAFVLSWYALRPGNTSCVLLITGESVRLV FT NCELTKDLVEAVATLRPLKHL" FT CDS 6829..7713 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:L7RZ18" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:L7RZ18" FT /protein_id="AGC11977.1" FT /translation="MPPKPDPSSSGEAPQAMPPAPPPRNSEGHRSAQSEAPGQNEEAML FT EQRLVRLIELMATKRHNSTLSNISFEIGRPSLEPTPEMRRNPENPYSRFSIDELFKMEI FT RSVSNNMANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSSVYLDPAGTVEFS FT TGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFD FT TFDYVTNGAAIQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLANTNVEYTGGMLG FT AEVVRNHRNAANQ" FT CDS 7710..7994 FT /codon_start=1 FT /product="11K protein" FT /db_xref="GOA:L7RYK9" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:L7RYK9" FT /protein_id="AGC11978.1" FT /translation="MRAERLNMLLLCVYRLGYVLPVDVCIKIISASAGPVSKGHSTYSR FT KRRARSIGRCWRCYRVYPPVCNSKCDNRTCRPGISPNYKVMAFIQGWSN" XX SQ Sequence 8117 BP; 2168 A; 1709 C; 2208 G; 2032 T; 0 other; aaaagagtca agcaaatgag catgattcaa gcaataaata ggtatgtgag cagtgccgat 60 aaattgaggt acggcaatga gtttgttatc aaattcggca ctgcatcaac tgagctcaag 120 cgtcatcatg gttactcatt ggacccagca ttgcgtgatc ttttgcccaa cataaagagg 180 gactctaatc tcttcttcca cgatgagatg cactattggg aaaagaatca actgatcaac 240 ttcttagaac attgtcggcc caacacgtgc ttatgcacaa ttgtttatcc cactgagata 300 ttcgttgggg ctcggcgatc cttgaatcca tgggcatatg agtttgagat caaaagggat 360 aagctacttt tctacccaga tggggtgcgc agcgaaggtt atgagcagcc ggtcaattgc 420 gggtatctgc tccgtacaag gaagatattg cttagggatg gtactgtgta cagcgttgat 480 ctcgtgtgca gcaaattttc ccatcatttg gtagcaatca ccaaggggga tctgatcaca 540 cctgcttatc gtagttttgg cccgttcgag gcaattaaga gcgcaggctt gcaagggata 600 agtaaaggta gaccgaagtt ctacccagta ccatgccaca tgatttccag gctgtacagg 660 tacttgcgat cattgaagaa gccagataag caatctgcaa tggcgaagtt ctcccagatg 720 tgcccagaac ccagtggaga tatgatcaga tttgttgagg agttgagtga tttgatcata 780 aataccggca ccctaagggt tatgatcgat gcagatttgt gcaagaattt ctttggcaat 840 ctcggattag ccttacctgc tgcactcgca tcgaagattc gaagtacacg cgccgtgagc 900 ttagaggcct tcatcgcttc actggaaccg ttggtggtcg actgcgaatt gcagaccgtt 960 tcttgggctg tgccgctcct gcctctgcta ttcagcgaaa cttccgatga accacctgag 1020 gatgccattg agaccatgga gcagaggtgg gagggcggcg ttggtttgct gcgtgatcgg 1080 attcctgcgc cgtatcgtgg ggatatgtgg tgcgagacta cccgccagat gagctactgg 1140 cgcattgagc accagaaagt caaatttctg agagggctga tgagactgta tgtcgacagc 1200 atgtgcactg agggcctccc catcaccacg acttttgagg cctatattgc taagcttatg 1260 tcgtgctgtt ccttgctcgg gctggttttg attaaatgca taactaccgc agagtatgcc 1320 gaagtgtcct taattgttga gagcacgcgc ttgctcgacg tgttattcgc aattggggat 1380 ctccgctggt tccgtgccac tcgccattcc aggtataatg ctaaattctt agatgaaacg 1440 gctgactggg cgaggtacaa aagtgagttc gagtgtgcaa catacgagag gccccgagga 1500 cttggccata ctggctacct tcagacctct gtgtatagct tttgtggtgt gagtacccgc 1560 tggtcattca attctaacta cctcggtgag gaagatcttg gaatcgacac ttacggctgt 1620 ggtataatgg ccaattctga aaaccaacca tcaactgcgt tagaagtcgc accacaaggg 1680 ctcgcaatgg gggatttctt aagctgcgct tgcgaagcgc gactgagtat ccgagtgctg 1740 gcatttccca cggagcatgg gttccacttg gagagaagga ggtcaactgg tcgcgccact 1800 tggtactgca agagtcatct cgattatgtg cacaaggaca ctcactatga gaatcagggt 1860 tggcccacat ggttaagcaa atggatggag ttgcatgata ttgatgaagc atactatgat 1920 agcatgttcg ctcaggaact ccccgctggt ggaactttgg agcatgaagt gagcgcagag 1980 ggtctgtttg cccctgattc gcgcatagtc atagccgagg tagaaggtga gtccctggtt 2040 tcgattgaat gtgcgttggg gaagaaaaca aggttgctga gattgggcga gtaccttgaa 2100 atgcccgaat tgtgccggag ctcgcatcgg ctatccatgc attgctgcac atctagtgga 2160 gtcacattca cgttcaggca gatcagttcg ctagattctg cagtggggat tgatgtgggg 2220 cagagcttag tgccgccgcc gcctgtggtg agtaaagcgt ccaaagctaa cccgaatgat 2280 gttcaccata cacgggaagg agttgtagtg catgcatccg gcaagtgccc aaattctgag 2340 aaatttcaca gggtgcccaa tgctggaggg ggtgattgct tctggttggc aatctctcac 2400 ttcactggag ttagtgtgca tgatatgaag caagggttac agcagttgac ttgggaaagt 2460 gaggcctttg attttgagct cagccaacag ctgaaaccga aggcctgggc agaggaggag 2520 gcaatcatag ctacaagtaa gcagtaccgg tacaggatag tggttttgag cgcagataaa 2580 gagcaaactg taacctatag ccccaaatca gaagcggtgc agtccatggt tctgtatcat 2640 gccggagcac actttgaggc agctttgccc aggaatgact gtgtgctcgt tgctgtagca 2700 tcagtcttga ggaggcgtat tgaggaggtg ctttcgatcc tgggagcgca attgggttca 2760 gagttcctcc aggatgtgtt gaagggggaa ggcatcaatc gggatcagtt ggctgtggtg 2820 ttcaagctct ttgatatatg tgcgcacatt catgctgaga gcgaggaatt cattgtaaat 2880 ccggaaggca gattacatgg gacattcaat ttgagtaggg atcacataga gcattgcaag 2940 agcaagccga ttggggttac taagtacacg agtgtgcatg atgcaagctg cgaagtaaag 3000 ccggaaacac tttctatgct gaaagcgatg tgcacgatgc ttccttacag tccatgcaag 3060 cttagagcga aagtgctggc cgatagtcta aatgctggaa gcactggggt gctatgtgat 3120 gaactgttca acaaggtcgg gaacctgtta gaagccaatg aggggagatt acaagaaggt 3180 ccgcgggaag tgggttgttt gctaggaact tttggagctg ggaaaagtat ggtgtttagg 3240 aaggtcctga acaataatct cgggaaaagt atactttaca tttccccaag gaagcacttg 3300 gccgactcgt tcaacgagct aattaaggca atcaagcaga aggagggtgc taccagtgtg 3360 caaggatttc gcacattcac ttttgagcgg gcgattctga aaagcccaca gttcaggcct 3420 gatgcaacga tcatagtgga tgaaatacag ctgttcccac cgggttacct ggatctattc 3480 gctttgctgg tgcctggagg ggtgcacata ttcttggtgg gggatccctg ccagagcgat 3540 tatgactcgg agaaggatag aagcctcttt caagcaatga agtccgacat caacctcttg 3600 ttggacgatg ctgattacga cttcaattgc agaagtcgta ggttcaagga taagatcttc 3660 gaaggtcgtc tgccatgcac tatggtatcc attgaagggg aagcgtccaa attcacgatc 3720 gtggagggtg tggaaaattg taaggctatt cactctaatg ctgaagtgtg cttggtctct 3780 tctttcgatg agaaaaagat tgtgcaaaca tacttcccaa actcttgcca atgttttaca 3840 tttggagagt ccacgggcat gacatacaag tctggagtca tactgataac cgacacttcg 3900 caatacacta gtgagaggag gtggctaacg gctctgagcc gtttctcaca ttcaattgct 3960 tttgtgaatg caaccggtgg taatattcag ttggtgacta gactgtacca gaatagagcc 4020 ctaggacgat ttttgctcag aaccgcgacg gtcgaggacc tcaaatctct attaccgggg 4080 agaccaaact tcaaagaggg tttcgaaggt gaaagaattg gggcagatga ggggaagagg 4140 gaattcaagc tggagggtga cccatggctg aagaccatgc tggatctact tcaaaaagag 4200 gatcaagagg aagttgagga agctgtgatt gagctaggcg aggaatggtt ccgcacacat 4260 ctaccgcagt gtgaactgga gggagtgaga gcaaggtggg tggagaagat actggctaag 4320 gaggtacgcg aaaaacgcat gggcctgctg gtttctgagc aattcacgga tgaacattca 4380 aagcaattag ggaagcagat tacaaatgca gccgagaggt tcgagacgat ctacccaagg 4440 cacagggctg cagacacggt cacattcatc atggctgtga ggaagaggtt gcgtttttca 4500 gatccaataa gagagagtgc taagctccgg gcagcagaga tgtatgggcc gtttctactt 4560 aaggaattcc tcaagcatgt accactcaaa cctatgcaca acacgggcat gatggctgaa 4620 gcaaagttcg atttcgagga gaagaagacc cagaagagtg cagccacaat tgagaatcat 4680 agcaacaggt cttgtaggga ttggctggca gatgtcggta tggtgttttc aaagtctcag 4740 ctctgcacca agtttgacaa caggttcaga gacgcaaaag ccgcgcagac catcgtttgc 4800 ttccagcaca gtgtcctgtg ccgcttcgct ccatacatga ggtacataga gaagaagctc 4860 agtgaggtgt tgcccgctag attttatatc cattcaggca agggtctgga agagctgaac 4920 aaatgggtca ttgagtccaa atttgagggg gtgtgcacag agtctgatta tgaggctttt 4980 gatgccagtc aagatcaata cattgtagcg ttcgaattag cgctaatgcg gtatttgggc 5040 ctgcccaatg atctcataga ggactacaag tacatcaaga cacaccttgg ctccaagttg 5100 gggaacttcg ctataatgcg cttctctggt gaggctagca cattcttatt caacaccatg 5160 gctaacatgc tgtttacctt cttgaggtac aagttgaagg gggatgagag gatatgcttt 5220 gctggagatg atatgtgtgc aaatagggct cttttcatca aggacacaca tgagggcttc 5280 ctcaagaagt tgaagttgaa agctaaggtg gacaggacaa acagaccaag cttctgcggg 5340 tggagtttgt gctcagatgg gatttataaa aaaccacaac ttgtctttga gagactctgc 5400 attgcaaaag agacagccaa cttggccaat tgcatagaca attatgcgat tgaggtatcc 5460 tatgcgtaca agcttgggga gaggatcaaa gagcgcatgt cagaggagga actagatgct 5520 ttctacaact gtgtgagggt cattatcaaa cacaagcatc tgcttaagtc tgaaatccgc 5580 agcgtgtatg aggaggtttg acagcttagg taatcagctt agtagtattg aatatatgga 5640 tgtggttttg caagttttga ataaatataa gtttgagcgt gttagtagtg ctttgaataa 5700 accaatagtt gtgcatagtg ttccaggtgc tggtaaaagt tccgcaatca gggagttact 5760 gaagttagac agtaggtttg agtgcatcac ccgcggccgg ccagatattc ccaatctaga 5820 gggggctttc atcaagggcg aacgtagtgg tgagaataag ttgttactgg ttgatgagta 5880 catagagggg cccgttccag aggatgcttt tgcaatcttt gcagatccac tgcagagcac 5940 agctgttagc ccatatagag cgcatttcat caagacgcta agtcatcgct ttggcaagtg 6000 cactgcttcg ctcttaaggg atttgggttg ggacgtgcaa gctgaaggtc aggactcagt 6060 acaaattgcc gacatcttca cggttgaccc taaagaaaca gttgtttact ttgagccgga 6120 agtcggaaag ttgttgcgga accacggcgt tgaggcaagt tgcattggtg aggtgcgagg 6180 agctactttt gagcacgtga cgttcgtcac ttctgaaaac agcccactaa ttgataaggc 6240 cgccgccttt cagtgcttaa cgaggcacac caagagcttg cttatactgt gccctgatgc 6300 cacttacacc gccgcctaat tacacagggt tatacatcgc ggcagcacta ggtgtatctc 6360 tagcggcagt agtagctcta ttcactagaa gcacattgcc aatcgtaggg gattcacagc 6420 acaacctccc acacgggggt cggtatcgtg acggcactaa ggccattgat tatttcaagc 6480 ccgcgaaatt gaattctgtg gagccgggca attactggta cacccaacct tggctgttgg 6540 tcttgctttt ggtcgcgctc atctgtctat ctgggcgtca tgctcaatgt tgcccaaggt 6600 gcaatcgagt gcacagtgct taatagcttt tgccttggct ttcgtcctaa gttggtatgc 6660 tctaaggccg gggaatacaa gttgtgttct gctaatcact ggagagtcag tcaggctggt 6720 caattgcgag ctcacaaaag atctagtgga ggccgtggcc acactaaggc cattgaaaca 6780 cctttaggtt cacaggtaaa agctcgaata aactgtttca cagcaagaat gccgcctaaa 6840 ccagatcctt ctagttcagg ggaagcgcca caagctatgc cacctgcacc acctccgcgc 6900 aattcggaag ggcacagatc cgcgcaatcg gaggcgccag ggcaaaatga agaagccatg 6960 ctggaacaaa ggctcgttcg attgattgag cttatggcca caaagaggca caactcgaca 7020 ttgagtaaca tctcctttga gataggtagg cccagtctgg aaccaacacc cgagatgaga 7080 aggaacccgg agaatccata ctctcgattc tcgattgacg agctgttcaa aatggaaatc 7140 cggtcggtgt cgaacaacat ggccaatact gaacaaatgg cgcagatcac tgcagatatt 7200 gctgggctcg gtgtccccac tgagcatgtt gctggcgtca tactgaaggt cgtaatcatg 7260 tgcgcgagcg tgagcagttc tgtctaccta gaccctgcag gaactgttga gttctccact 7320 ggagcagtcc ctttggattc cataattgca atcatgaaaa atcgtgctgg actgaggaag 7380 gtgtgcaggc tgtatgctcc ggtcgtttgg aattacatgc tcgttcagaa caggccccct 7440 tcagattggc aagcaatggg gtttcaatgg aatgcacgct tcgccgcttt tgacacattt 7500 gattatgtga ctaacggcgc cgcgatccag cctgtcgagg ggctgatccg taggcccacg 7560 cctgaggaga cgatagctca taacgcccat aagagcatgg caattgataa gtcgaacaga 7620 aatgaaaggt tggccaacac caacgttgaa tatactgggg gcatgctcgg tgcagaggtc 7680 gtgcgtaatc atcggaatgc agcaaaccaa tgagagcgga acgtctaaat atgttacttt 7740 tgtgtgttta ccgactgggt tatgtcttac cagtcgatgt gtgtattaaa ataataagtg 7800 ctagtgcagg tccagtttcc aagggtcatt caacttactc acgtaagcga agggcccgaa 7860 gtattggccg atgctggcgc tgttatcgag tctatccacc agtttgtaat tctaagtgtg 7920 ataataggac atgtcgtcca ggcataagtc caaactataa agtaatggct ttcattcaag 7980 gttggagtaa ctgaggtgat accaccaggg ataggaagtc taagtttcgc ataaagctta 8040 aataatatat aagtgtgcaa ctataaagaa agtatgtttt taaaatattt tagcaaattt 8100 aaaaaaaaaa aaaaaaa 8117 //