ID JX679252; SV 1; circular; genomic DNA; STD; VRL; 2738 BP. XX AC JX679252; XX DT 18-NOV-2012 (Rel. 114, Created) DT 18-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Tomato yellow leaf curl China virus isolate SC226-8, complete genome. XX KW . XX OS Tomato yellow leaf curl China virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2738 RA Jing Z., Tao R., Ling Q.; RT ; RL Submitted (12-SEP-2012) to the INSDC. RL Plant Pathology, College of Plant Protection, 2 Tiansheng Road, Chongqing, RL Chongqing 400716, China XX DR MD5; 71d04415b0bb2136f7dd8968a73be402. XX CC ##Assembly-Data-START## CC Assembly Method :: virus v. 2011-10-22 CC Sequencing Technology :: Complete Genomics CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2738 FT /organism="Tomato yellow leaf curl China virus" FT /host="Malva parviflora" FT /isolate="SC226-8" FT /mol_type="genomic DNA" FT /country="China" FT /collection_date="20-Feb-2012" FT /db_xref="taxon:185793" FT gene 130..477 FT /gene="AV2" FT CDS 130..477 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:K7WKS4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K7WKS4" FT /protein_id="AFX60945.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL FT ILVIRARDYVEATRRYSHFHSRLQGASPSELRQPLHTSCCCPHCPRHQKTNMDKQAHVS FT EAHDVPDVQKP" FT gene 290..1060 FT /gene="AV1" FT CDS 290..1060 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:K7X0P1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7X0P1" FT /protein_id="AFX60946.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYTRRAAVPTVRVTRRQIWT FT NRPMYRKPMMYRMYRSPDVPKGCEGPCKVQSYEARHDVSHTGKVICVTDVTRGNGITHR FT VGKRFCVKSIYVIGKIWMDENIKLKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEP FT STGTVKNDLRDRFQVIRKFNYMVTGGQYASKEQAVVKKFMRVNTHVVYNHQEQAKYENH FT TENALLLYMVCTHASNPVYATLKVRIYFYDSQMN" FT gene complement(1057..1461) FT /gene="AC3" FT CDS complement(1057..1461) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:K7XEB6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7XEB6" FT /protein_id="AFX60949.1" FT /translation="MDSRTGELLTAAQAENGVYIWTVKNPLYFKITKHLDRPFLRNHDI FT ITLQVQFNYNLRKALGIHKCFLTCKIWTRLHPQTLRFLRVFKYQCMKYLDRLGVISINN FT VIRAISHVLYNVLEGTINVIEDHDIKLNIY" FT gene complement(1202..1606) FT /gene="AC2" FT CDS complement(1202..1606) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:K7WGG8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WGG8" FT /protein_id="AFX60948.1" FT /translation="MRSSSPSKAHSTQVPIRVQHRIAKKTTRRRRVDLPCGCSYFLAIG FT CHDNGFTHRGTTHCSSSREWRLYLDGQKSPLFQNNQTPRQTISEEPRHNHLTSPIQLQP FT EESVGDTQMFSNMQNLDSFTSSDLAFLKSI" FT gene complement(1509..2594) FT /gene="AC1" FT CDS complement(1509..2594) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:K7WN62" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7WN62" FT /protein_id="AFX60947.1" FT /translation="MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIQALETPVNKVFIR FT ICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPNRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDYVLQFH FT NLNSNLDRIFTPPMEVYISPFSSSSFDQVPEELDEWAIDNVVSAAARPLRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALKNWAVKNAIFVTLQGPL FT YSGSYQGATPNRQEDNQTTES" FT gene complement(2144..2437) FT /gene="AC4" FT CDS complement(2144..2437) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7WKT0" FT /protein_id="AFX60950.1" FT /translation="MGLLTCMSSSNSKENSSVKIKDSSISHPQIGQHISIRTFRELKAQ FT QMSRHTWRKTETCLIMEFSRSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2738 BP; 731 A; 548 C; 612 G; 847 T; 0 other; accggatggc cgcgcgattt tttttaaagt ggtccccgca ctcgcgtatg tccaatcatg 60 gccgctcctc aaagcttaat tattaaatgg tcccctataa aacttaggcc ccaagtattt 120 acgttaaaca tgtgggatcc tttactcaac gagttcccgg ataccgtaca cgggttcagg 180 tgtatgcttg caataaaata cttgcaactt gtagaaaata cgtattctcc cgatacattg 240 ggatacgatc taatacgtga cctcatactg gttatacgtg cgagggatta tgtcgaagcg 300 acccgccgat atagtcattt ccactcccgc ctccaaggtg cgtcgccgtc tgaacttcga 360 cagcccttac acacgtcgtg ctgctgtccc cactgtccgc gtcaccagaa gacaaatatg 420 gacaaacagg cccatgtatc ggaagcccat gatgtaccgg atgtacagaa gccctgatgt 480 tcctaagggt tgtgaaggcc catgtaaggt gcagtcctac gaggcccgtc acgatgtatc 540 tcatactggt aaggtgatat gtgtcacgga tgttacacgt ggtaatggta ttacgcatcg 600 agttggtaag agattttgtg tgaagtctat ttacgtcatt gggaagatat ggatggatga 660 aaatattaaa ttgaagaatc acaccaatac agttatgttt ttccttgtta gagatcggcg 720 tccgagtggt actccgatgg attttcagca ggtgtttaat tgttatgaca atgagccaag 780 caccggtact gtgaagaatg atcttagaga taggtttcaa gtgattcgca agttcaatta 840 tatggttact ggtgggcaat atgcgtctaa agaacaagca gtggtgaaga agttcatgcg 900 ggttaatacc catgttgtgt ataatcatca agaacaggcg aagtatgaaa atcatactga 960 gaatgcgttg ttgttgtata tggtctgtac tcatgcgagt aatcctgtat atgcgacttt 1020 gaaagtccgc atttatttct atgattctca aatgaattaa taaatattga gttttatatc 1080 atgatcttca attacattaa ttgtgccttc taggacatta tataatacat gcgatattgc 1140 tctaattaca ttgttgatgc taatcactcc tagtctatct aaatatttca tacattgata 1200 tttaaatact cttaagaaac gcaaggtctg aggatgtaaa cgagtccaga ttttgcatgt 1260 tagaaaacat ttgtgtatcc ccaacgcttt cctcaggttg tagttgaatt ggacttgtaa 1320 ggtgattatg tcgtggttcc tcagaaatgg tctgtctagg tgtttggtta ttttgaaata 1380 aaggggattt ttgaccgtcc agatataaac gccattctct gcttgagctg cagtgagtag 1440 ttcccctgtg cgtgaatcca ttatcgtgac agcctatggc gagaaagtat gaacagccac 1500 agggtagatc aactctccgt cgtctggttg tcttcttggc gattcggtgt tgcaccctga 1560 taggaacctg agtagagtgg gccttggagg gtgacgaaga tcgcattttt taccgcccag 1620 tttttaagtg cggaattctt ttcctcttcc agatactctt tatagctgga attgggtcct 1680 ggattgcaga ggaagatagt ggggatcccg cctttaattt gaactggttt tccgtatttg 1740 gtgttgcttt gccagtccct ttgggccccc ataaactctt taaagtgctt taggtagtgc 1800 ggatcgacgt catcaatgac gttgaaccaa gcatcattac tgtacacctt tggactcaga 1860 tctaaatgac cacacaaata attatgtggt cctaatgacc tggcccacat cgtcttcccc 1920 gttctactat caccctctat gactatacta atcggtcgta aaggccgcgc agcggcactg 1980 acaacattat cgatcgccca ttcatcaagt tcttcgggaa cttggtcaaa agaagaagaa 2040 gaaaacggag aaatatatac ctccattgga ggagtaaaaa tcctatctaa attactattt 2100 aaattatgaa attgtaaaac ataatcctta ggagccttct cccttagtat attgagggcc 2160 gaagctttgg accctgaatt gattgcctcg gcatatgcgt cgttggcaga ttggcaacct 2220 cctctagctg atcgtccatc gatctggaaa actccatgat caagcacgtc tccgtctttc 2280 tccatgtatg tcttgacatc tgttgagctt ttagctccct gaatgttcgg atggaaatgt 2340 gctgacctat ttggggatgt gagatcgaag aatctttgat ttttacactg gaattttcct 2400 tcgaattgga tgaggacatg caggtgagga gacccatctt cgtgcaattc tctacagatt 2460 ctgatgaata ctttattaac tggggtttct agggcttgaa tttgggaaag tgcctcttct 2520 ttggtgagag aacagtgtgg gtatgtaagg aaataatttt tggcatttat tctgaattta 2580 tttggaggag ccattgactg gtcaatcggt gtctctcaaa cttggctata caattggtgt 2640 ctggtgtctt atttatatgt ggacaccaaa tggcattgtc gtaattccca atagaaattc 2700 aaaattcaaa attcaaaagc ggccatccgt ataatatt 2738 //