ID JX679251; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC JX679251; XX DT 18-NOV-2012 (Rel. 114, Created) DT 18-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Tomato yellow leaf curl China virus isolate SC176, complete genome. XX KW . XX OS Tomato yellow leaf curl China virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2737 RA Ling Q., Tao R., Ling Q.; RT ; RL Submitted (12-SEP-2012) to the INSDC. RL Plant Pathology, College of Plant Protection, 2 Tiansheng Road, Chongqing, RL Chongqing 400716, China XX DR MD5; 747d15abbe8f2b80c1f0de8587e2234f. XX CC ##Assembly-Data-START## CC Assembly Method :: Virus v. 2010-12-20 CC Sequencing Technology :: Complete Genomics CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2737 FT /organism="Tomato yellow leaf curl China virus" FT /host="Malva parviflora" FT /isolate="SC176" FT /mol_type="genomic DNA" FT /country="China:Sichuan" FT /db_xref="taxon:185793" FT gene 129..476 FT /gene="AV2" FT CDS 129..476 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:K7XEA5" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K7XEA5" FT /protein_id="AFX60939.1" FT /translation="MWDPLLNEFPDTVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDL FT ILVIRARDYVEASRRYSHFHSRLQGASPSELRQPLHTSCCCPHCPRHQKTNMDKQAHVS FT EAHDVPDVQKP" FT gene 289..1059 FT /gene="AV1" FT CDS 289..1059 FT /codon_start=1 FT /gene="AV1" FT /product="AV1 protein" FT /db_xref="GOA:K7X0P1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7X0P1" FT /protein_id="AFX60940.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYTRRAAVPTVRVTRRQIWT FT NRPMYRKPMMYRMYRSPDVPKGCEGPCKVQSYEARHDVSHTGKVICVTDVTRGNGITHR FT VGKRFCVKSIYVIGKIWMDENIKLKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEP FT STGTVKNDLRDRFQVIRKFNYMVTGGQYASKEQAVVKKFMRVNTHVVYNHQEQAKYENH FT TENALLLYMVCTHASNPVYATLKVRIYFYDSQMN" FT gene complement(1056..1460) FT /gene="AC3" FT CDS complement(1056..1460) FT /codon_start=1 FT /gene="AC3" FT /product="AC3 protein" FT /db_xref="GOA:K7WGG3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K7WGG3" FT /protein_id="AFX60943.1" FT /translation="MDSRTGELLTAAQAENGVYIWTVKNPLYFKITKHHERPFLRNHDI FT ITLQVQFNYNLRKALGIHKCFLTCKIWTRLHPQTLRFLRVFKYQCIKYLDRLGVISINN FT VIRAISHVLYNVLEGTIDVIEDHDIKLNIY" FT gene complement(1201..1605) FT /gene="AC2" FT CDS complement(1201..1605) FT /codon_start=1 FT /gene="AC2" FT /product="AC2 protein" FT /db_xref="GOA:K7WN57" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K7WN57" FT /protein_id="AFX60942.1" FT /translation="MRSSSPSKAHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFLAIG FT CHDNGFTHRGTTHCSSSREWRLYLDGQKSPLFQNNQTPRETISEEPRHNHITSPIQLQP FT EESVGDTQMFSNLQNLDSFTSSDIAFLKSI" FT gene complement(1508..2593) FT /gene="AC1" FT CDS complement(1508..2593) FT /codon_start=1 FT /gene="AC1" FT /product="AC1 protein" FT /db_xref="GOA:K7X0N4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7X0N4" FT /protein_id="AFX60941.1" FT /translation="MAPPHKFRINAKNYFLTYPHCSLTKEEALSQIQALETPVNKLFIR FT ICKELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPHRSAHFHPNIQGAKSSTDVKTYM FT EKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPLEVYISPFSSSSFDQVPEELEDWAADNVVSAAARPLRPVSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYIKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAVKNAIFVTLQGPL FT YSGSYQGATPNRQEDNQTTES" FT gene complement(2143..2436) FT /gene="AC4" FT CDS complement(2143..2436) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K7XEB1" FT /protein_id="AFX60944.1" FT /translation="MGLLTCMSSSNSKENSSVKTKDSSISHPHIGQHISIRTFRELKAQ FT QMSKHTWRKTETCLIMEFSRSMDDRLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2737 BP; 729 A; 540 C; 613 G; 855 T; 0 other; accggatggc cgcgcgattt ttttaaagtg gtccccgcat ttgcgtatgt ccaatcatgg 60 ccgctcctca aagcttaatt attaaatggt cccctataaa acttaggccc caagtattta 120 cgttaaacat gtgggatcct ttactcaacg agttcccgga taccgtacac gggttcaggt 180 gtatgcttgc aataaaatac ttacagcttg tagaaaatac gtattctccc gatacgttgg 240 gatacgatct aatacgtgat ctcatactgg ttatacgtgc gagggattat gtcgaagcgt 300 cccgccgata tagtcatttc cactcccgcc tccaaggtgc gtcgccgtct gaacttcgac 360 agcccttaca cacgtcgtgc tgctgtcccc actgtccgcg tcaccagaag acaaatatgg 420 acaaacaggc ccatgtatcg gaagcccatg atgtaccgga tgtacagaag ccctgatgtt 480 cctaagggtt gtgaaggccc atgtaaggtg cagtcctatg aggcccgtca tgatgtatct 540 catactggta aggtgatatg tgtcacggat gttacacgtg gtaatggtat tacgcataga 600 gttggtaaga ggttttgtgt gaaatctatt tacgtcattg ggaagatatg gatggatgaa 660 aatattaaat tgaagaatca caccaataca gttatgtttt ttcttgttag agatcggcgt 720 ccgagtggta ctccgatgga ttttcagcag gtgtttaatt gttatgacaa cgagccaagc 780 accggtactg tgaagaatga tcttagagat aggtttcaag tgattcgcaa gttcaattat 840 atggttactg gtgggcaata tgcttccaaa gaacaagcag tggtgaagaa gttcatgcgg 900 gttaataccc atgttgtgta taatcatcag gaacaggcga agtatgaaaa tcatactgag 960 aatgcgttgt tgttgtatat ggtgtgtact catgctagta atcctgtata tgcgactttg 1020 aaagtccgta tctattttta tgattctcaa atgaattaat aaatattgag ttttatatca 1080 tgatcttcaa ttacatcaat tgtgccttct aggacattgt ataatacatg agatattgct 1140 ctaattacat tgttgatgct aatcactccc aatctatcta aatatttaat acattgatac 1200 ttaaatactc ttaagaaacg caatgtctga ggatgtaaac gagtccagat tttgcaggtt 1260 agaaaacatt tgtgtatccc caacgctttc ctcaggttgt agttgaattg gacttgtaat 1320 gtgattatgt cgtggttcct cagaaatggt ctctcgtggt gtttggttat tttgaaataa 1380 aggggatttt tgaccgtcca gatataaacg ccattctctg cttgagctgc agtgagtagt 1440 tcccctgtgc gtgaatccat tatcgtgaca gcctatggcg agaaagtatg aacatccaca 1500 gggtagatca actctccgtc gtctggttgt cttcttggcg attcggtgtt gcaccttgat 1560 aggaacctga gtagagtggg ccttggaggg tgacgaagat cgcatttttt accgcccaat 1620 ttcgaagtgc ggagttcttt tcctcttcca gatactcttt atagctggaa ttgggtcctg 1680 gattgcagag gaagatagtg ggtattccgc ctttaatttg aactggtttc ccgtatttgg 1740 tgttgctttg ccagtccctt tgggccccca tgaattcctt aaagtgcttt atgtagtgcg 1800 gatctacgtc atcaatgacg ttgaaccaag catcattact gtacaccttt ggactcagat 1860 ccaaatgacc acacaaataa ttatgtggtc ctaatgacct ggcccacatc gtcttccccg 1920 ttctactatc accctctatg actatactta ccggtcttaa aggccgcgca gcggcactga 1980 caacattatc ggccgcccaa tcttcaagtt cttctggaac ttgatcaaaa gaagaagaag 2040 aaaatggaga aatatatacc tctagtggag gagtaaaaat cctatctaaa ttactattta 2100 aattatgaaa ttgtaaaaca aaatctttag gagccttctc ccttagtata ttgagggccg 2160 aagctttgga ccctgaattg attgcctcgg catatgcgtc gttggcagat tggcaacctc 2220 ctctagccga tcgtccatcg atctggaaaa ctccatgatc aagcacgtct ccgtctttct 2280 ccatgtatgt tttgacatct gttgagcttt tagctccctg aatgttcgga tggaaatgtg 2340 ctgacctatg tggggatgtg agatcgaaga atctttggtt tttacactgg aattttcctt 2400 cgaattggat gaggacatgc aggtgaggag acccatcttc gtgcaattct ttacagattc 2460 ggatgaatag tttattaact ggtgtttcta gggcttgaat ttgggaaagt gcctcttctt 2520 tggtgagaga acaatgtggg tatgtaagga aataattttt ggcatttatt ctgaatttat 2580 gaggaggagc cattgactgg tcaatcggtg tctctcaaac ttggctatgc aattggtgtc 2640 tggtgtctta tttatatgtg gacactaaat ggcattgtcg taattcccaa tagaaattca 2700 aaattcaaaa ttcaaaagcg gccatccgta taatatt 2737 //