ID   JX658571; SV 1; linear; genomic RNA; STD; VRL; 2261 BP.
XX
AC   JX658571;
XX
DT   25-NOV-2012 (Rel. 114, Created)
DT   25-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Grapevine partitivirus isolate 3138-01-3953 RNA dependent RNA polymerase
DE   (RdRp) gene, complete cds.
XX
KW   .
XX
OS   Grapevine partitivirus
OC   Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae.
XX
RN   [1]
RP   1-2261
RA   Rott M.E., Belton M.;
RT   "Detection of grapevine and tree fruit viruses by next generation
RT   sequencing";
RL   Unpublished.
XX
RN   [2]
RP   1-2261
RA   Rott M.E., Belton M.;
RT   ;
RL   Submitted (07-SEP-2012) to the INSDC.
RL   Canadian Food Inspection Agency, Centre for Plant Health, 8801 East Saanich
RL   Rd, North Saanich, British Columbia V8L 1H3, Canada
XX
DR   MD5; 362bc4492f7e0a33e7ab05adf8d248f3.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: CLCbio Genomic Workbench v. 4.7
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2261
FT                   /organism="Grapevine partitivirus"
FT                   /host="Vitis vinifera"
FT                   /isolate="3138-01-3953"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /collection_date="Sep-2011"
FT                   /db_xref="taxon:1256786"
FT   gene            74..2185
FT                   /gene="RdRp"
FT   CDS             74..2185
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /db_xref="UniProtKB/TrEMBL:K7XX07"
FT                   /protein_id="AFX73024.1"
FT                   /translation="MLNQIRDYFHERLTRLLFDQKIFQKEAGDPDATLEAHQDSDIRRI
FT                   YKSIHYDYAASNANADYEAKYQQIRHIFEKKHAQQGFPTEFYSLRTSTVPDNRIPPSGI
FT                   LLLPFEFKSSNVVTATETVPESGFEIHPRILRLVKSRYPQYVQYVRMYTRPLGTTDATV
FT                   FDFFKPQTPTQPVEPDRLTRVMHHVIKRLAITPYLPLHFVDTQYDNRPLSTGTGYFNRR
FT                   SYEANIHAMFSHPKEYSDRPTSKGYYINAFLESARPLIHQIKSNGTPFRTPPNDLSKSM
FT                   CEFFLQRPTMLYTRNHISDRDGILKQRPVYAVDDFFLTIESMLTFPAHVIARKPDCCIM
FT                   YGLETIRGANRHLDKLAQNYKSFFTIDWSGFDQRLPWEIVKTFFTEFLPRVLIVNHGYA
FT                   PTYEYPSYPDLTSEKMSTRLIHLISFFATWYFNMVFITADGFSYVRQHAGVPSGLLNTQ
FT                   FLDSYGNLFLIIDALIEFGVTDPELDEILLFIMGDDNSGFTLWSISRLDDFISFLESYS
FT                   LTRYGMVLSKTKSVLTVMRNKIETLSYQCNFGMPTRPIPKLVAQLCYPERGPRPKYMSA
FT                   RAVGMAWASCGQDVVFHDFCRDVYFEFLDDAAEIDDDTYLQVQSHLPGFLRIDESVRQI
FT                   INFQSFPTIDTIRKAISKWKGPLSFQPKWNLHHFMKQPDDVPLDSLTLRSYMETNNLSI
FT                   PIMNTLFSL"
XX
SQ   Sequence 2261 BP; 667 A; 593 C; 344 G; 657 T; 0 other;
     tataaacgcc ctcaaaagct tacagaaatt taaagaattt attttaaaaa tattactctt        60
     ctctcttgtc aaaatgctta atcagatacg tgactacttt catgaacgcc tcacacgcct       120
     tctcttcgat cagaaaatat ttcagaaaga agccggagac cccgacgcca ctttggaagc       180
     tcatcaagat tccgacattc gtagaattta taaatcaatt cactacgact atgctgcctc       240
     aaacgccaac gcagactacg aagcaaaata ccaacaaata cgccatattt tcgaaaagaa       300
     acacgcccaa caaggctttc ccaccgaatt ttattcactt agaacatcaa ctgttccaga       360
     taaccgtatt ccaccctcag gtattctact attacccttc gaattcaagt catcaaacgt       420
     tgtaaccgca acagaaaccg ttcccgaatc aggttttgaa attcacccac gaattctcag       480
     actcgttaag agccgatacc cacagtacgt tcaatacgtt cgaatgtata ctcgccctct       540
     tggaaccaca gacgcaaccg tctttgattt ctttaagcct cagactccaa cacaacccgt       600
     tgaaccagat cgcctaacac gcgtaatgca ccatgtcatc aaacgactgg ccattactcc       660
     gtatttgccg ctccacttcg ttgatactca atacgataac cgtcccctct ctactggaac       720
     tggttacttt aatcgacgat catatgaagc aaacatacat gcgatgtttt cacaccctaa       780
     ggaatattca gaccgaccaa cgtcgaaagg ttattatatt aacgctttcc ttgagtccgc       840
     ccgaccttta attcatcaga taaaatcaaa cggaactccg ttcaggacac ctccaaatga       900
     tctctcaaaa tctatgtgtg aattctttct tcaacgcccg acaatgttat atacccgcaa       960
     tcatatatcc gatcgcgatg gtattctcaa gcaacgacca gtatatgctg ttgacgattt      1020
     ctttctaaca attgaatcaa tgttaacctt ccctgctcat gtcatagctc gtaaacccga      1080
     ctgctgtatt atgtacggcc tagaaacgat tcgtggtgct aaccgtcact tagacaaact      1140
     agcccagaat tataaatcat tcttcacgat tgattggtcc ggtttcgatc aacgcttacc      1200
     ctgggaaatt gtaaagacat tctttacaga atttcttccc agagtcttaa ttgtcaatca      1260
     tggctacgcg cctacatatg agtatccctc atatcctgac ctcacttctg agaaaatgtc      1320
     cacacgacta atccacctta tctcgttctt cgcaacttgg tatttcaata tggtattcat      1380
     taccgctgat ggattttcat acgttagaca acacgctggt gtgccttccg gcctccttaa      1440
     tacgcaattt ctcgattctt atggtaacct tttcctcatc atcgatgctc tcatcgaatt      1500
     cggtgtcacc gaccccgaac ttgacgaaat tcttctcttc attatgggag acgacaactc      1560
     aggttttacc ctatggtcaa tatcgcgcct agatgatttc atttcctttc tcgaatccta      1620
     ctcgttaaca cgatatggta tggtcctttc aaagactaag tcagttttaa ctgtcatgag      1680
     aaataaaatt gaaactctct cttaccaatg caactttggt atgccaaccc gccccatccc      1740
     taaactcgtt gcccaactct gttatccaga gcgaggcccg cgacccaaat acatgtcagc      1800
     acgcgctgtc ggcatggcct gggcttcttg cggacaagat gtagtttttc atgacttttg      1860
     tcgtgatgtc tacttcgagt tcttagacga tgcagctgaa atcgacgacg acacctattt      1920
     acaggtacaa tctcacctcc ccggatttct tagaattgac gaatctgtac gccagatcat      1980
     caactttcag tcatttccga cgattgatac catacgtaaa gctatttcca aatggaaagg      2040
     ccccctatcc ttccaaccaa aatggaatct tcaccatttt atgaaacagc cagatgatgt      2100
     cccactcgac tcactcaccc tccgttctta catggaaact aataacctta gcattccaat      2160
     catgaacact ctctttagtt tatagtttac taattaaatt tagttctatt gtacttttat      2220
     ataataaatt aaaaactctt taaaaaaaaa taaaaaaaaa a                          2261
//