ID   JX658569; SV 1; linear; genomic RNA; STD; VRL; 1945 BP.
XX
AC   JX658569;
XX
DT   25-NOV-2012 (Rel. 114, Created)
DT   25-NOV-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Grapevine partitivirus isolate 3138-03-541 RNA dependent RNA polymerase
DE   (RdRp) gene, complete cds.
XX
KW   .
XX
OS   Grapevine partitivirus
OC   Viruses; Riboviria; Partitiviridae; unclassified Partitiviridae.
XX
RN   [1]
RP   1-1945
RA   Rott M.E., Belton M.;
RT   "Detection of grapevine and tree fruit viruses by next generation
RT   sequencing";
RL   Unpublished.
XX
RN   [2]
RP   1-1945
RA   Rott M.E., Belton M.;
RT   ;
RL   Submitted (07-SEP-2012) to the INSDC.
RL   Canadian Food Inspection Agency, Centre for Plant Health, 8801 East Saanich
RL   Rd, North Saanich, British Columbia V8L 1H3, Canada
XX
DR   MD5; b4d1fb0d33b957b87f19edca280c0f26.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: CLCbio Genomic Workbench v. 4.7
CC   Sequencing Technology :: Illumina
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1945
FT                   /organism="Grapevine partitivirus"
FT                   /host="Vitis vinifera"
FT                   /isolate="3138-03-541"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /collection_date="Sep-2011"
FT                   /db_xref="taxon:1256786"
FT   gene            62..1816
FT                   /gene="RdRp"
FT   CDS             62..1816
FT                   /codon_start=1
FT                   /gene="RdRp"
FT                   /product="RNA dependent RNA polymerase"
FT                   /db_xref="GOA:K7X7P4"
FT                   /db_xref="UniProtKB/TrEMBL:K7X7P4"
FT                   /protein_id="AFX73022.1"
FT                   /translation="MASTNLLRLGKAPERSHYNEPLFRRTRSNHVRTGIIKKAIYKICS
FT                   SELADKVIHGYRRSEGGDDIAETDFQRSDVPYFDLKRDFHYLRALRVCEKLFRPSRTLH
FT                   PIAFPDLRFYPWTLSVSAEAPFTVEKHWRTKIQQRQADGEQLDGRLTFHNLYDEVFQLN
FT                   RHLIHQIKEGDKSFWNLDGTPKPYWYNTLHTRSHMVKSNEPDKLRAVFGVPKLLLMAEN
FT                   MFLWNIQKEYLNQKINSHMLWGFETFKGGWLKLWNRLYSKKCSTFLSADWSGFDRFALF
FT                   ECIDDVHNMWRSWFDFSKYEPTRANSGLPGIQLSYPHSKTSPEKIERLWQWMCYCIKYT
FT                   PIKGQSGQLYQWQFNGIASGYQQTQLMGSFVNAIYILTCLSELGINIESENFDLLVQGD
FT                   DSLTAFPEIYTDQEFPIFLKDLETIAKRRFNANLSVDKTAIGDSLNSVDVLSYSNVQGI
FT                   AFRDEAELLAHLLYPEKFQTLEATASCCIGIAYASMGCSKVVYDVCHDAYSFLTNSFHI
FT                   DPDVNYLQDFFRVRGSPLTDDFRIPRFPTFDECFSQNFEIRSRPESEKQRLWPTIPTGE
FT                   FGFRFINN"
XX
SQ   Sequence 1945 BP; 578 A; 410 C; 325 G; 632 T; 0 other;
     gcactcgcag atcttataac tccgttttta caaattattt tgactcacaa aaaatttatt        60
     tatggcttcc acaaatttac ttcgacttgg aaaagctcca gaacgatcac attacaatga       120
     accccttttc agaagaaccc gatctaacca cgttagaact ggtattatca agaaagcaat       180
     ttacaaaatt tgctcttccg aacttgctga caaagtgatt catggttacc gacgttccga       240
     aggtggtgac gatatagccg agactgactt tcagcgatca gacgttcctt actttgatct       300
     aaaaagagat tttcattatt taagagcact tcgtgtttgt gaaaaacttt tcagaccatc       360
     cagaactcta catcctatag ctttcccgga tctccgtttc tatccttgga ccctttccgt       420
     ttcagcagaa gcaccgttca cagttgaaaa acactggcga accaagatcc aacagcgtca       480
     agctgatggt gaacaactag atggcagatt aacttttcat aatttatatg atgaagtttt       540
     tcaactcaat agacatctga ttcaccaaat caaagagggt gacaaatcct tttggaatct       600
     tgatggtact cctaaacctt actggtacaa cactttacat actaggtctc atatggttaa       660
     atctaatgaa cctgacaagt tacgtgctgt ctttggtgtg cccaaacttc tactaatggc       720
     cgaaaacatg tttctttgga acatccagaa agagtatctt aatcaaaaga tcaactcaca       780
     tatgctctgg ggtttcgaaa catttaaagg tggctggctt aagctttgga accgtctgta       840
     ttctaagaaa tgttcaacat tcttatcagc agattggtcc ggattcgatc gattcgctct       900
     ttttgagtgc attgacgatg tccacaacat gtggcgatca tggtttgatt tttcaaaata       960
     cgaacctact cgtgctaatt caggtcttcc tggtattcag ctttcttacc cacattccaa      1020
     aactagtcca gaaaagattg aacgactttg gcaatggatg tgctattgta taaaatacac      1080
     tcctatcaaa ggtcaatctg gtcaactcta tcagtggcaa ttcaatggaa tcgcttctgg      1140
     ttatcaacag actcaactca tgggatcatt cgttaacgca atttatattc taacttgctt      1200
     atccgaactt ggtatcaaca ttgaatcgga aaatttcgat ttacttgttc aaggcgatga      1260
     cagtttaact gcatttcctg aaatctacac agaccaagaa tttcctatat ttcttaaaga      1320
     tttagaaact atcgctaaac gacgtttcaa cgctaatctt tcagtcgaca aaactgcaat      1380
     tggtgattct ttaaattcag ttgatgttct tagctactct aatgtacaag gaattgcttt      1440
     ccgcgatgaa gcagagctac tcgctcactt actttatcca gaaaagtttc aaactcttga      1500
     agctacagct tcttgttgca ttggtattgc ttacgcatcc atgggatgct caaaggttgt      1560
     ttatgacgta tgtcatgacg cctattcatt tttgactaat tcatttcata tcgatccaga      1620
     cgtcaattat ctccaggatt tctttcgcgt tcgaggttca cctcttactg acgatttccg      1680
     tattccgcgt tttcccacat tcgacgaatg cttctctcaa aactttgaga ttagatctcg      1740
     ccccgaatct gaaaaacaaa gattatggcc tactattcct accggagaat ttggttttcg      1800
     atttatcaat aattagttgg tacgtgccgt ccgttaattt ctttctttca tttgctttta      1860
     tcaagctttc atttcatttt ataattgaaa atacagaaaa aaaaatttga taagcccatt      1920
     ttgggtatta aaataaaaaa aaaaa                                            1945
//