Dbfetch
ID JX645046; SV 1; linear; genomic DNA; STD; VRL; 5990 BP. XX AC JX645046; XX DT 11-NOV-2012 (Rel. 114, Created) DT 11-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Pseudoplusia includens densovirus isolate IAF, complete genome. XX KW . XX OS Pseudoplusia includens densovirus OC Viruses; Parvoviridae; Densovirinae; Ambidensovirus. XX RN [1] RP 1-5990 RX DOI; 10.1128/JVI.02462-12. RX PUBMED; 23118456. RA Huynh O.T., Pham H.T., Yu Q., Tijssen P.; RT "Pseudoplusia includens Densovirus Genome Organization and Expression RT Strategy"; RL J. Virol. 86(23):13127-13128(2012). XX RN [2] RP 1-5990 RA Huynh O.T.H., Pham H.T., Yu Q., Tijssen P.; RT ; RL Submitted (06-SEP-2012) to the INSDC. RL L'institut National de la Recherche Scientifique-Institut Armand-Frappier, RL Universite du Quebec, 531 Boul. des Prairies, Laval, Quebec H9S4X6, Canada XX DR MD5; 4b3edc374640747d3f787664aa2e4075. DR EuropePMC; PMC3497649; 23118456. DR EuropePMC; PMC6071259; 30011943. XX CC ##Assembly-Data-START## CC Assembly Method :: CAP3 Sequence Assembly Program v. 1999 CC Assembly Name :: PiD CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5990 FT /organism="Pseudoplusia includens densovirus" FT /host="Pseudoplusia includens" FT /isolate="IAF" FT /mol_type="genomic DNA" FT /country="Canada" FT /collection_date="1985" FT /db_xref="taxon:185637" FT repeat_region 1..540 FT /rpt_family="terminal" FT /rpt_type=INVERTED FT CDS 647..1348 FT /codon_start=1 FT /product="nonstructural protein NS3" FT /db_xref="InterPro:IPR035222" FT /db_xref="UniProtKB/TrEMBL:K7SA37" FT /protein_id="AFV91529.1" FT /translation="MSNSRIALIRRLFAPKVYNPKSMFYLAYKSARLNGVSFSRLPKKI FT RKMQHDMDTQIIACGEDIDHTLAIEELEKWDWTQQKRLPFQLFLAAMHLKEIPDWLDET FT MLIESVYYFKELINYRDPYDTDEFNTWNMNGKPFKTIWKICKFCYTNCEDPDEYRFMFN FT RTVFAEDAEEIVQRFQDESSWCEICHTCPLFNISVIYENSPNNKRKCSSSSDDEDIISD FT SFYVKHPKAEN" FT CDS 1355..3019 FT /codon_start=1 FT /product="nonstructural protein NS1" FT /db_xref="GOA:K7SQA3" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K7SQA3" FT /protein_id="AFV91527.1" FT /translation="MNNGDTDRKTDSTTRPNQDIIRESSRGTSPSEQCSMVATTSRKRE FT WSYGGRGTMASIAKESQENFQYMAEELEKMGSEFFGYVTGQSIKPSSAYISDVIILRDI FT QLRDQCLDVLREYGRSRRNGLFGFSEEGDHIHVIHDCSYTNRSCRDIWISQVKPFGSVQ FT KTGKPVKFIWEFKRTDWYDVFIYFFVRKRGERAIFVRGESGKIPSNDECVRWTREFKER FT EMVSSSDCTDYYECEQQEHKISRRSDAGSSNGRLYEKKAYSAGKFAYIRKKTKALLRKY FT YVSPVSAICDVPEFRDDDLLCDPKNRDYIQAACDDFGKDLNAMSLREIYNLLTEDYNFT FT DEKELNPYALFISSMKYDNLENSLNIIVELLKYQCNDDEDLIVEFLTNLVNVLDRRIPK FT LNAFLILSPPSAGKNFFFDMIFGLLLSYGQLGQANRHNLFAFQEAPNKRVLLWNEPNYE FT SSLTDTIKMMFGGDPYTVRVKNRMDAHVKRTPVIILTNNTVPFMYETAFSDRIIQYKWD FT AAPFLKDYELKPHPMTFFLLLSKYNISFYICVLFKHN" FT CDS 1362..2189 FT /codon_start=1 FT /product="nonstructural protein NS2" FT /db_xref="InterPro:IPR016770" FT /db_xref="UniProtKB/TrEMBL:K7RY67" FT /protein_id="AFV91528.1" FT /translation="METPTEKPIVLPDLIKTLYESLQEEHPLVNNVAWWQLHLENVSGH FT MEEEEQWPALQKNLKKTFNIWQKNWKKWAVNSLDTLLGKVLNLPAHISAMSLSYEIFSS FT VINVWTSCVSTEEVDETDCSDFLKKEITSTSSTIALTPIGVAGTSGLVKSSPSDLFKKL FT ANQSSSSGNLSEQTGTMSSSISLYENGESVQYSLEEKVGKYRVTMNVYDGPESLKKEKW FT YQAPIARITMSVNSKSTKLAVDQMLAVLTEDFMKRKPIRQGNSHTYGKRQKRY" FT CDS complement(3006..5423) FT /codon_start=1 FT /product="structural protein VP1" FT /db_xref="GOA:K7S1X4" FT /db_xref="InterPro:IPR003433" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:K7S1X4" FT /protein_id="AFV91530.1" FT /translation="MSFYTRGLIHRARPGYRIIPESTASEDIELGTLGERTPLLSESAV FT TAAEEGASIGIPEVAAGLAGAVGTHADLLYRNRHVFKSVLTGKYTDLEGKPLKEKRPIS FT ERVKQIGRGIFQGDFHRAFPEDLKVESEQEKSDLLRYYNHNRRLAGLSEAYPQGKGYSY FT AKSQKVLDAEKRGLTVPGYKYLGPGNSLDRGEPVNQIDADAKEHDEAYDKAKTSQEVSD FT ADSKFVSKALDHIVNAINLKETPGNTFGAAIGAIGIGTKQAIEKHSGVIYPSVSGMSRQ FT INPKYLSSWSDWIRENQASNFAGIQLPEDFYTEEKTLSDSSMSEGTKRKADSPVEEGPS FT KKGAHNAPVSSQSTSAQVPSSAGATTALDSTMAMSLPGTGQGTSSGGGNTQGQEVYAIP FT RPFSNFGKKFSTYSKSHKFMIFGLANNVIAQTGTTDNLNRLLTTCLAEVPWQKVPFYMN FT QSEFDLLPNGSVMVECNVKVIFRSNRIAFETSATATKQATLNQISNVQTAIGLNKLGWG FT LDRSFTAFQTDQPMIPTATAAPKYGAVTGTNGYRGMIADYYGADSTNDAAFGAAGNYPH FT HQVGSFTFLQNYHCMYVQTNRGTGGWPCLAEHIQQYDSKTVNNECLIDVSYKPLMGHLK FT LPLNYKVVGWPTAKGVISVGSNLPNMRGAAITGPEASQNVVESLNTSDRNFGTIFDIYS FT DIEKSQVLHKGPWGAEQPQIQPSVHIGIQAVPALTTGALLVNSSPLNSWTDSMGYIDVV FT ATCTVMEQQPSAFPFATEATTNPGNTVYRIPLTPNTNNSAFNGLYGNGPNYA" FT CDS complement(3006..4592) FT /codon_start=1 FT /product="structural protein VP2" FT /db_xref="GOA:K7RTM7" FT /db_xref="InterPro:IPR003433" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:K7RTM7" FT /protein_id="AFV91531.1" FT /translation="MSRQINPKYLSSWSDWIRENQASNFAGIQLPEDFYTEEKTLSDSS FT MSEGTKRKADSPVEEGPSKKGAHNAPVSSQSTSAQVPSSAGATTALDSTMAMSLPGTGQ FT GTSSGGGNTQGQEVYAIPRPFSNFGKKFSTYSKSHKFMIFGLANNVIAQTGTTDNLNRL FT LTTCLAEVPWQKVPFYMNQSEFDLLPNGSVMVECNVKVIFRSNRIAFETSATATKQATL FT NQISNVQTAIGLNKLGWGLDRSFTAFQTDQPMIPTATAAPKYGAVTGTNGYRGMIADYY FT GADSTNDAAFGAAGNYPHHQVGSFTFLQNYHCMYVQTNRGTGGWPCLAEHIQQYDSKTV FT NNECLIDVSYKPLMGHLKLPLNYKVVGWPTAKGVISVGSNLPNMRGAAITGPEASQNVV FT ESLNTSDRNFGTIFDIYSDIEKSQVLHKGPWGAEQPQIQPSVHIGIQAVPALTTGALLV FT NSSPLNSWTDSMGYIDVVATCTVMEQQPSAFPFATEATTNPGNTVYRIPLTPNTNNSAF FT NGLYGNGPNYA" FT CDS complement(3006..4457) FT /codon_start=1 FT /product="structural protein VP3" FT /db_xref="GOA:K7SQA8" FT /db_xref="InterPro:IPR003433" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:K7SQA8" FT /protein_id="AFV91532.1" FT /translation="MSEGTKRKADSPVEEGPSKKGAHNAPVSSQSTSAQVPSSAGATTA FT LDSTMAMSLPGTGQGTSSGGGNTQGQEVYAIPRPFSNFGKKFSTYSKSHKFMIFGLANN FT VIAQTGTTDNLNRLLTTCLAEVPWQKVPFYMNQSEFDLLPNGSVMVECNVKVIFRSNRI FT AFETSATATKQATLNQISNVQTAIGLNKLGWGLDRSFTAFQTDQPMIPTATAAPKYGAV FT TGTNGYRGMIADYYGADSTNDAAFGAAGNYPHHQVGSFTFLQNYHCMYVQTNRGTGGWP FT CLAEHIQQYDSKTVNNECLIDVSYKPLMGHLKLPLNYKVVGWPTAKGVISVGSNLPNMR FT GAAITGPEASQNVVESLNTSDRNFGTIFDIYSDIEKSQVLHKGPWGAEQPQIQPSVHIG FT IQAVPALTTGALLVNSSPLNSWTDSMGYIDVVATCTVMEQQPSAFPFATEATTNPGNTV FT YRIPLTPNTNNSAFNGLYGNGPNYA" FT CDS complement(3006..4310) FT /codon_start=1 FT /product="structural protein VP4" FT /db_xref="GOA:K7RY71" FT /db_xref="InterPro:IPR003433" FT /db_xref="InterPro:IPR016184" FT /db_xref="UniProtKB/TrEMBL:K7RY71" FT /protein_id="AFV91533.1" FT /translation="MAMSLPGTGQGTSSGGGNTQGQEVYAIPRPFSNFGKKFSTYSKSH FT KFMIFGLANNVIAQTGTTDNLNRLLTTCLAEVPWQKVPFYMNQSEFDLLPNGSVMVECN FT VKVIFRSNRIAFETSATATKQATLNQISNVQTAIGLNKLGWGLDRSFTAFQTDQPMIPT FT ATAAPKYGAVTGTNGYRGMIADYYGADSTNDAAFGAAGNYPHHQVGSFTFLQNYHCMYV FT QTNRGTGGWPCLAEHIQQYDSKTVNNECLIDVSYKPLMGHLKLPLNYKVVGWPTAKGVI FT SVGSNLPNMRGAAITGPEASQNVVESLNTSDRNFGTIFDIYSDIEKSQVLHKGPWGAEQ FT PQIQPSVHIGIQAVPALTTGALLVNSSPLNSWTDSMGYIDVVATCTVMEQQPSAFPFAT FT EATTNPGNTVYRIPLTPNTNNSAFNGLYGNGPNYA" XX SQ Sequence 5990 BP; 1885 A; 1105 C; 1167 G; 1833 T; 0 other; cttatactct acgagtattg ccaccgacga cgacgacggc agtctgtcgg ctccgccgac 60 cgccgcgaag cggcgagact gccgtcgtcg tcgtcggtgg caatactcgt agagtataag 120 caagtactca gcatgtatag agtacttgat gacgtcacgg tgaccttgac ctttgacctt 180 ctatatgacc ttgacctact tctgtgacct tctggtctac tgacctttga ccttctgagc 240 tgatggtcta ctgacctgat gatggagagg atccgaagac cttggagctg aaggtggaac 300 accaggacct gatgttagtg aaggacggca atagtgtgcg agtgagatag caacatagca 360 actgttagag cgagatagca atatgtgtga aagagatagc atgaaaacaa accttgaatt 420 aatttatgca aattttatta tcttgttatt gtgacctcga ttgaccggca aactcgcgtc 480 gaagctggta gtgccgtgtg caacttaaac tgctggccag cggaccattg ggtatataaa 540 gtgatattat tagagcgcca tcatcagtct acacgaagca gtcgtcgagt aaacatctaa 600 gtgaaatagt agtgttgtgc aaaagttgtt cctgaatata atcggtatgt ccaactcaag 660 aattgcttta attcgtcgtt tatttgcacc taaagtgtac aatccaaagt caatgttcta 720 cctagcatat aaaagtgcta gacttaatgg tgtgtctttt tcaagattac ctaaaaagat 780 acgtaaaatg caacatgaca tggacactca gattatagct tgtggagaag atatagatca 840 tactttagct atagaagagt tagaaaaatg ggattggacc caacaaaaac gactaccatt 900 tcagttgttt ttagctgcca tgcatttaaa agaaatacca gattggttag atgaaacaat 960 gttaattgaa agtgtatatt attttaaaga attaattaat tatagagacc cttacgatac 1020 tgatgaattt aatacttgga atatgaatgg aaagcctttt aaaactatat ggaaaatatg 1080 taaattctgt tataccaatt gtgaagatcc tgatgaatat agattcatgt ttaaccgcac 1140 tgtatttgct gaagatgctg aggaaattgt tcagagattt caagatgaaa gtagttggtg 1200 tgaaatatgt catacatgtc cattgtttaa tatatctgtg atttatgaga attctccaaa 1260 taataaaagg aaatgttcaa gtagttccga tgatgaggac ataatttctg atagcttcta 1320 tgtaaaacat cctaaagcag aaaattaatt acagatgaac aatggagaca ccgacagaaa 1380 aaccgatagt actaccagac ctaatcaaga cattatacga gagtcttcaa gaggaacatc 1440 ccctagtgaa caatgtagca tggtggcaac tacatctaga aaacgtgagt ggtcatatgg 1500 aggaagagga acaatggcca gcattgcaaa agaatctcaa gaaaactttc aatatatggc 1560 agaagaactg gaaaaaatgg gcagtgaatt ctttggatac gttactgggc aaagtattaa 1620 accttccagc gcatatatca gcgatgtcat tatcttacga gatattcagc tccgtgatca 1680 atgtttggac gtcttgcgtg agtacggaag aagtagacga aacggactgt tcggattttc 1740 tgaagaagga gatcacatcc acgtcatcca cgattgctct tacaccaatc ggagttgcag 1800 ggacatctgg attagtcaag tcaagccctt cggatctgtt caaaaaactg gcaaaccagt 1860 caagttcatc tgggaattta agcgaacaga ctggtacgat gtcttcatct atttctttgt 1920 acgaaaacgg ggagagcgtg caatattcgt tagaggagaa agtgggaaaa taccgagtaa 1980 cgatgaatgt gtacgatgga ccagagagtt taaagaaaga gaaatggtat caagctccga 2040 ttgcacggat tactatgagt gtgaacagca agagcacaaa attagccgta gatcagatgc 2100 tggcagttct aacggaagac tttatgaaaa gaaagcctat tcggcaggga aattcgcata 2160 catacggaaa aagacaaaag cgttattaag gaagtactat gtgtctccag taagtgctat 2220 atgtgatgtt ccagagtttc gtgatgatga tttactatgt gatcctaaaa atcgtgatta 2280 tatacaagct gcatgcgatg acttcggtaa ggatttgaat gctatgtcat taagagaaat 2340 ttataactta cttactgaag actacaattt tactgatgaa aaggaactta atccatatgc 2400 actattcatt tcatctatga aatatgataa tcttgaaaat tctttaaata ttattgttga 2460 attactaaaa tatcaatgta atgatgatga agatttaatt gtagaatttc ttactaactt 2520 ggttaatgtt ttagatcgtc gtattcccaa attaaatgct tttcttattt tgtctcctcc 2580 aagtgctggt aaaaatttct tttttgatat gatttttgga ttgttattat cttatggaca 2640 gttaggtcaa gctaatagac ataacttgtt tgcttttcaa gaagcaccta ataaacgtgt 2700 gttattgtgg aatgaaccta attatgaaag ttcgttaaca gacacaatta aaatgatgtt 2760 tggaggagac ccttacactg ttagagttaa gaatcgtatg gatgcacatg taaaacgcac 2820 tccagttatt atactaacta acaatactgt accttttatg tatgaaactg cttttagtga 2880 tagaattatt caatataaat gggatgctgc gccattcctg aaggattatg aattgaaacc 2940 acatccaatg acatttttcc ttttattgag taaatacaat atatcatttt acatttgtgt 3000 tttatttaag cataattagg accattgcca tataaaccat tgaaagcaga attattagta 3060 tttggagtaa gaggaatacg atatacagta ttaccaggat tagtggtagc ttctgttgca 3120 aacggaaatg ctgagggctg ttgttccata actgtacaag tagcaactac atcgatatat 3180 cccatagaat ctgtccaaga attcaaagga cttgaattaa ctagtaatgc accagtagtt 3240 agagcaggaa cagcctgtat accaatatga acacttggtt gaatttgagg ttgctctgca 3300 ccccatggac ctttatgtaa aacttgagac ttttcaatat cagaatagat atcaaatata 3360 gttccaaagt tacgatcaga agtattaaga ctttcaacta cgttttgact tgcttcaggt 3420 ccggttatag ctgcacctct catattaggt aaattacttc cgacagatat tactccttta 3480 gcagttggcc aaccaactac tttataattt agtggtaatt ttaaatggcc catcaatggt 3540 ttatatgata catcaattaa acattcatta ttaacagttt tagaatcata ttgttgaata 3600 tgttcagcta aacaaggcca acctccagtt cctctatttg tttgaacgta catacagtga 3660 tagttttgca aaaatgtaaa agaaccaact tgatggtgag gataatttcc tgcagcacca 3720 aatgcagcat cgttagttga atctgcacca taataatcag caatcatgcc tctatatcca 3780 tttgtaccag ttactgcacc atatttagga gcagcagttg cagtaggtat cattggttga 3840 tcagtttgaa aagcagtaaa agaacgatct aatccccatc caagtttatt taaacctatt 3900 gcagtttgaa catttgatat ttgattcaaa gtagcttgtt tagtagcagt tgcactagtc 3960 tcaaaagcaa ttctattaga tcggaaaata actttaacgt tacattctac cataacagac 4020 ccattaggta acaaatcgaa ttctgactgg ttcatataaa acggtacttt ttgccatggt 4080 acttcagcta aacaagtagt taataatcta tttaaattat cagtagtacc agtttgagca 4140 ataacattat ttgcaagacc aaagatcata aacttgtgac ttttagaata agtactgaac 4200 tttttaccaa aattagagaa aggtcgaggt atagcataaa cttcttgacc ttgagtatta 4260 ccaccaccag aggatgtgcc ttgaccagtt ccgggtaaag acattgccat tgtagaatct 4320 aatgcagttg tagcaccagc agaactagga acttgagctg aagtactttg agaagaaact 4380 ggagcgttat gagcaccttt tttagaagga ccttcttcaa ctggagaatc agctttacgt 4440 ttagttccct ctgacatgga tgaatctgaa agagtttttt cttctgtgta aaagtcctca 4500 ggtaattgaa ttccagcgaa gttactggct tggttttctc taatccaatc agaccagcta 4560 cttaagtatt taggattaat ttgacgggac atacctgaaa cagaagggta gattactcca 4620 ctgtgttttt cgatagcttg cttagttcca attccaatag ctccaatagc agctccaaaa 4680 gtgttaccag gagtttcttt aaggttgatt gcattaacta tatgatctaa tgctttacta 4740 acaaatttac tgtcagcgtc acttacttct tgacttgttt tagctttatc gtatgcttcg 4800 tcgtgttctt tagcgtctgc gtcaatttga ttaacaggtt ctcctctgtc tagagagttt 4860 ccaggaccaa gatacttata tccaggaaca gttaatcctc ttttttcagc gtctaaaact 4920 ttttgactct tagcataaga gtatcctttt ccttgtggat atgcttcact taaaccagct 4980 agtcttctat tgtggttgta ataacgtaac aaatcacttt tttcttgttc actttctact 5040 tttaaatcct caggaaatgc tctatgaaag tctccttgaa atatacctct tcctatttgt 5100 ttaactcgtt cagatatagg acgtttttct tttaatggtt ttccttctaa atctgtatat 5160 tttccagtta agacactttt aaaaacgtga cgatttctat ataataaatc agcatgtgtt 5220 cctacagcac cagctaatcc agcagcaact tcaggtatac caatagatgc accttcttct 5280 gcagcagtta cagcactttc acttaataaa ggagttcttt caccaagagt accaagttca 5340 atatcttcag aagcagtact ttccggtata atacggtaac caggccgcgc gcgatgtatt 5400 aaccctctcg tgtagaaaga catactgact aaaaatagaa cacgtggttg tttatatacc 5460 caatggtccg ctggccagca gtttaagttg cacacggcac taccagcttc gacgcgagtt 5520 tgccggtcaa tcgaggtcac aataacaaga taataaaatt tgcataaatt aattcaaggt 5580 ttgttttcat gctatctctt tcacacatat tgctatctcg ctctaacagt tgctatgttg 5640 ctatctcact cgcacactat tgccgtcctt cactaacatc aggtcctggt gttccacctt 5700 cagctccaag gtcttcggat cctctccatc atcaggtcag tagaccatca gctcagaagg 5760 tcaaaggtca gtagaccaga aggtcacaga agtaggtcaa ggtcatatag aaggtcaaag 5820 gtcaaggtca ccgtgacgtc atcaagtact ctatacatgc tgagtacttg cttatactct 5880 acgagtattg ccaccgacga cgacgacggc agtctcgccg cttcgcggcg gtcggcggag 5940 ccgacagact gccgtcgtcg tcgtcggtgg caatactcgt agagtataag 5990 //