ID JX575184; SV 1; linear; genomic RNA; STD; VRL; 6395 BP. XX AC JX575184; XX DT 13-NOV-2012 (Rel. 114, Created) DT 13-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Rehmannia mosaic virus isolate Shanxi, complete genome. XX KW . XX OS Rehmannia mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6395 RA Niu Y., Zhang X., Zhao H., Miao L.; RT ; RL Submitted (03-SEP-2012) to the INSDC. RL College of Life Science, Shanxi Agricultural University, Mingxian Street, RL Taigu, Shanxi 030801, China XX DR MD5; 7f530fc4491db04f323cff5df2dd455c. DR EuropePMC; PMC4732330; 26823577. XX FH Key Location/Qualifiers FH FT source 1..6395 FT /organism="Rehmannia mosaic virus" FT /host="Rehmannia" FT /isolate="Shanxi" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="01-Oct-2011" FT /db_xref="taxon:425279" FT CDS 72..4922 FT /codon_start=1 FT /transl_except=(pos:3420..3422,aa:OTHER) FT /product="replicase protein" FT /note="readthrough protein" FT /db_xref="GOA:K7T3P9" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K7T3P9" FT /protein_id="AFW04236.1" FT /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVEEFNARDRR FT PKINFSKAISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHESQKDSIELYLSRLDRGNKVVLSFQ FT KEAFDRYAESPQDVVCHNTFQTCEHQHFQNSGRVYAIALHSIYDIPADEFGAAPLRKNV FT HTCYAAFHFAEGLLLEDSYVNLDETNACFMRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYAAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRSEVLVSKDFV FT FTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLPSLSMTFFLH FT TKLAVLKDDLLIRKFSLGPKTVCQHIWDEISLAFGSAFPSIKERLLNRKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETETMYNALSELSVLKESDKFDVDI FT FSQMCQKLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALHDSEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLTGDHPESTYTRNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVFDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIITCDSWRRVAVSSESVVYSDMAKLKTL FT RNLLHNGEPHVSTARVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIKRRANA FT SGVIVATKDNVRTVDSFMMNYGKAARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKRSVSQEMVNGAATINPISKPSHGKVLTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIISGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSTFLLD FT MYKVDASTQXQLQIDSVFKGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNYDAVTM FT RLTDISLNVKDCILDMSKSVAAPKDLHFPLIPMVRTAAEMPRQTGLLENLVAMIKRNFN FT APELSGIVDIENTASLVVDKFFDSYLLKEKRKPNKNVPLFSRESLNRWLERQEQATIGQ FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSEL FT TRQLLDSVDSSRFLFFTRKTPAQIEEFFGDLDSHVPMEILELDISKYDKSQNEFHCAVE FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC FT LASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDVQQAANLMWNFEAKLFKKQYGYFCGRY FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWDHLEEFRRSLCGVAVSLNNCAYYTQLDDAI FT WEVHKTAPAGSFVYKSLVKFLSDKVLFRSLFQDGSSC" FT CDS 72..3422 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:K7SRN2" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:K7SRN2" FT /protein_id="AFW04235.1" FT /translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVEEFNARDRR FT PKINFSKAISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQVPYGSL FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHESQKDSIELYLSRLDRGNKVVLSFQ FT KEAFDRYAESPQDVVCHNTFQTCEHQHFQNSGRVYAIALHSIYDIPADEFGAAPLRKNV FT HTCYAAFHFAEGLLLEDSYVNLDETNACFMRDGDRLTFSFASESTLNYSHSYSNILKYV FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYAAMEDAW FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRSEVLVSKDFV FT FTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLPSLSMTFFLH FT TKLAVLKDDLLIRKFSLGPKTVCQHIWDEISLAFGSAFPSIKERLLNRKLIKVAGDALE FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKRMEETETMYNALSELSVLKESDKFDVDI FT FSQMCQKLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALHDSEKASEGALVVT FT SRDVEEPSMKGSMARGELQLAGLTGDHPESTYTRNEEIESLEQFHMATAESLIRKQMSS FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVFDVVSRKWL FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGIITCDSWRRVAVSSESVVYSDMAKLKTL FT RNLLHNGEPHVSTARVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIKRRANA FT SGVIVATKDNVRTVDSFMMNYGKAARCQFKRLFIDEGLMLHTGCVNFLVSMSLCEIAYV FT YGDTQQIPYINRVTGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNKRYEGFVMSTS FT SVKRSVSQEMVNGAATINPISKPSHGKVLTFTQSDKEALLSRGYSDVHTVHEVQGETYS FT DVSLVRLTPTPVSIISGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSTFLLD FT MYKVDASTQ" FT CDS 4906..5709 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:H6WRE1" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:H6WRE1" FT /protein_id="AFW04237.1" FT /translation="MALVVKGKVNIGEFIDLTKTEKLLPSIFTPVKSVMCSKVDKVMVR FT ENESLSEVNLLKGVKLIENGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LASYYTAAAKKRFQFKVVPNYAITTHDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITTVKDGGPMELTEEVVDEFMEDVPMSVRLAKFRSRTGKKNNVKK FT VKFEGVDRSVPKMNKGKSRNNGGVFERNIFIDNDSETIVAEPDSF" FT CDS 5712..6191 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:K7SLH3" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:K7SLH3" FT /protein_id="AFW04238.1" FT /translation="MSYTIATPSQFVYLSSAWADPVELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPANDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNRSAFEGSSGLVWTSGPAT" XX SQ Sequence 6395 BP; 1851 A; 1250 C; 1525 G; 1769 T; 0 other; gtatttttta acaacaatta ccaacaacaa caaacaatca aacaacatta caatcactat 60 ttacaactac aatggcatac acacaaacag ctaccacatc tgctttgctt gacactgtcc 120 gaggtaacaa caccttggtc aatgatcttg caaagcgtcg cttgtacgac acagcggttg 180 aagagtttaa cgctcgagac cgtaggccaa aaataaactt ttcaaaggcg ataagtgagg 240 aacagactct tattgctaca cgggcttatc cggaattcca aataacattt tataatactc 300 aaaacgctgt gcattcactt gcaggcgggt tgcgatcatt agaattggaa tacctgatga 360 tgcaagttcc gtatgggtca ctgacttatg atattggagg gaacttcgca tcgcatctgt 420 tcaaaggacg ggcatacgtg cactgttgca tgccaaatct tgacgtccgc gacatcatgc 480 ggcacgagag ccagaaggac agcatcgaac tatacctctc caggttagac agagggaaca 540 aagttgtact gagcttccag aaagaagcct tcgacagata tgcggaatct ccgcaggatg 600 ttgtttgtca caacactttc caaacttgtg agcatcagca tttccagaac tctggcaggg 660 tgtatgccat cgcgttacac agtatctacg atatccctgc cgatgaattt ggcgcagcac 720 ctctaaggaa aaatgttcat acatgctacg ctgctttcca cttcgccgaa ggtcttcttc 780 tcgaagattc ttacgtcaac ttggacgaaa ccaacgcgtg tttcatgcgc gatggggaca 840 ggttgacctt ttcttttgca tctgagagta ctcttaatta ttcgcatagc tactctaata 900 ttttaaagta tgtgtgtaaa acttacttcc ctgcctctaa tagagaggtt tatatgaagg 960 agtttttagt taccagggtt aacacctggt tttgcaagtt ttctagaata gatacttttt 1020 tactgtacaa aggtgtggcg cacaagagcg tagatagtga gcagttttat gctgcaatgg 1080 aggatgcatg gcattacaaa aagacacttg cgatgtgcaa cagcgagaga atccttctag 1140 aggattcctc ctcagtcaat tactggttcc caaaaatgag ggacatggtc attgtgccat 1200 tgttcgacat atctctcgag accagtaaaa ggacccgcag cgaggtctta gtgtccaaag 1260 attttgtttt tactgttctt aaccacatcc gcacgtacca ggccaaagct ttgacttact 1320 cgaatgtatt atccttcgtc gaatcaattc ggtcgagggt gatcatcaat ggggtaacag 1380 cgaggtctga gtgggatgtt gataagtcac ttttaccgag tttatccatg acattcttct 1440 tgcacacaaa acttgcagtt cttaaagacg atctattgat ccgcaagttc agtctcgggc 1500 ccaaaactgt atgtcaacac atatgggatg agatctcatt ggcttttggc agcgctttcc 1560 cgtcgattaa agaaagactt ttgaacagga aactgatcaa agtggctggc gacgcgttag 1620 agattagggt gcctgatctt tacgtaactt tccacgatag attggtgacc gagtacaaag 1680 cctcggtgga tatgcctgca cttgacataa gaaaaagaat ggaagaaact gaaacgatgt 1740 acaacgcact ttcagagttg tcggttctaa aagagtctga caaattcgat gttgatattt 1800 tttcccagat gtgccaaaag ttggaggtag acccaatgac ggctgcaaag gttatagtgg 1860 cagtgatgag caatgagagc ggtctcacgc tcacgttcga acaaccaaca gaagctaacg 1920 tcgcattggc tttgcatgat tcagagaagg cttcagaagg tgcacttgtg gtcacctctc 1980 gtgatgtaga agagccctcc atgaaaggtt cgatggcaag gggtgagtta caattagctg 2040 gtcttaccgg agaccatccg gagtcgacct atacaaggaa cgaggaaatt gagtcattgg 2100 agcagtttca tatggcaacg gcagagtctt taattcgcaa acagatgagc tcgattgtgt 2160 acacaggtcc gattaaagtt cagcaaatga aaaactttat cgatagcctg gtagcatcac 2220 tatctgctgc ggtgtcgaat cttgtcaaga tcctaaagga tactgctgct attgatttag 2280 aaacccgtca aaagtttgga gtcttcgacg ttgtgtcaag gaagtggcta atcaaaccca 2340 ctgctaagag tcacgcatgg ggagtggtag aaactcacgc gaggaaatat catgttgcac 2400 ttttggagta tgatgaacaa gggattatta catgcgattc ttggaggaga gtggcggtca 2460 gttctgaatc tgttgtttat tctgatatgg ccaaacttaa aactttaagg aatttgcttc 2520 ataatggtga accacacgta agcacagcaa gagttgtact cgtggatggc gtcccagggt 2580 gtgggaaaac caaagaaatc ctttcaagag ttaatttcga tgaggattta atcttagtac 2640 ctgggaagca agctgctgaa atgatcaaga gacgtgcgaa cgcctcaggt gttatcgtgg 2700 ccacgaagga caacgtaagg accgtggact ctttcatgat gaattacgga aaggctgcgc 2760 gctgtcagtt caagaggctg ttcattgacg aaggtctaat gttacacact ggttgtgtga 2820 attttctcgt gtctatgtct ttgtgcgaaa ttgcatatgt ttatggagac acgcagcaaa 2880 ttccgtatat caacagagtt acaggtttcc catacccagc ccatttcgct aaactggaag 2940 tagacgaagt ggagacgcgc agaactactc tgcgttgtcc cgccgacgtc actcattatc 3000 tgaacaaaag gtatgaaggg tttgtgatga gtacatcgtc tgtcaagaga tccgtatccc 3060 aagagatggt gaatggtgcg gcgaccatca acccaatctc caaaccttcg catggtaagg 3120 tcttgacctt cactcagtcg gacaaggaag ctctactttc gagagggtac tctgacgtgc 3180 atactgtgca tgaggtgcaa ggagagacgt atagtgatgt gtctctagtg aggttaaccc 3240 ctactcctgt ctcgatcatc tctggtgaca gtcctcatgt tttggttgct ctttcgagac 3300 atacttgttc acttaagtat tacactgttg tgatggatcc cttagttagt attattagag 3360 atttagaaaa acttagcact ttcttgttag atatgtacaa agttgatgct agtacgcaat 3420 agcaattaca gatagactcg gtgtttaaag gttctaatct ttttgtggct gctccgaaga 3480 ctggcgatat ttccgatatg caattttact atgataagtg tctccctggg aatagcacca 3540 tgatgaacaa ttatgatgct gtgaccatga ggctgactga catttcattg aatgtcaaag 3600 attgcatatt ggacatgtcc aagtctgttg cagctccgaa ggatttacat tttccactga 3660 tcccgatggt acgaacggcc gctgagatgc cgcgccagac tggacttttg gaaaacttgg 3720 tggcaatgat aaaaagaaac tttaacgcgc ccgagttgtc aggaattgta gatattgaga 3780 atactgcatc tttggttgta gataagtttt ttgatagtta cttacttaaa gaaaaaagaa 3840 aaccaaataa aaatgttcct ttgtttagta gagagtctct caatagatgg ttagaaagac 3900 aagagcaagc gactattggc caactcgcag atttcgattt tgtcgacttg cccgcggttg 3960 atcagtatag gcacatgatc aaagcacaac ccaagcagaa gctggacaca tccattcaaa 4020 cggaatatcc tgctctgcaa acgattgtgt accactcaaa aaagattaac gcgatttttg 4080 gccccttatt cagtgaatta actagacagt tgctcgacag tgtagattca agcagatttt 4140 tgttctttac acgaaaaacg ccggcacaaa tcgaggaatt ctttggagac cttgatagtc 4200 atgtgccgat ggaaattttg gagcttgata tctcgaagta cgataaatct caaaatgaat 4260 ttcattgcgc tgtagagtac gaaatctggc ggagactggg gttcgaagat ttcctgggtg 4320 aagtttggaa acaaggtcat aggaagacca ccctcaagga ctataccgca ggaattaaaa 4380 cctgtatatg gtaccagagg aagagcggtg acgttaccac gttcattggg aacacagtga 4440 tcatcgctgc atgcttagct tcaatgcttc ccatggaaaa aataatcaaa ggcgccttct 4500 gcggggacga cagtttgctc tattttccga aagggtgtga gttccctgat gtacaacaag 4560 cggcaaatct gatgtggaat tttgaagcaa aactgttcaa aaagcaatac ggatactttt 4620 gcgggaggta cgttatacat cacgacagag ggtgtattgt ctattacgac cctctaaagt 4680 tgatctccaa gctcggtgct aaacacatca aggattggga tcacttagag gaattcagga 4740 gatccctttg tggtgttgct gtttcgttga acaattgcgc gtactacacg caattggacg 4800 acgcgatctg ggaggtccat aaaaccgccc cggcgggttc gtttgtttat aaaagtttgg 4860 taaagttttt gtcagataag gttcttttta gaagtttatt tcaagatggc tctagttgtt 4920 aaaggaaagg tgaatatcgg tgagtttatt gacttgacga aaacggagaa attgttaccg 4980 tcaatattca caccagttaa aagtgttatg tgctccaagg ttgataaggt aatggtacgt 5040 gaaaatgagt cattatccga agttaacctt ctcaaaggtg tgaagctcat cgaaaatgga 5100 tatgtttgtc tcgctggtct agtggttaca ggtgagtgga atctgcccga caattgtaga 5160 ggtggtgtca gtgtttgtct ggtggacaaa agaatggaaa gagcagatga ggctactttg 5220 gcatcttact acaccgctgc tgcaaagaaa aggtttcagt tcaaggttgt cccgaactat 5280 gcaataacca ctcatgatgc gatgaagaac gtgtggcaag ttctagttaa tattagaaat 5340 gttaagatgt cggcgggttt ctgtccgctt tcgttggagt ttgtgtctgt atgtattgtt 5400 tataggaata acataaaatt gggtttgagg gaaaaaatca caactgtgaa agatggagga 5460 cccatggaac tcaccgaaga agtggtagac gagttcatgg aagacgttcc aatgtctgtc 5520 agacttgcga agtttcgatc tcgaaccgga aaaaagaata atgtaaagaa ggttaaattt 5580 gaaggtgtcg atcggtctgt gccgaagatg aataaaggaa agagtagaaa taatggaggt 5640 gtatttgaaa gaaatatttt tatcgataac gattcggaga ctatcgtcgc cgaaccagac 5700 tcgttttaag tatgtcttat acaattgcaa ctccatccca gttcgtgtat ttgtcatctg 5760 catgggccga cccagtagaa ttaattaatt tatgtactaa tgcgttaggt aatcagttcc 5820 aaacacaaca agcgagaact gtcgtccaac gacagtttag cgaagtgtgg aaaccgtcgc 5880 cacaggtcac tgtcaggttt cctgccaatg actttaaagt ttataggtac aatgcggtgc 5940 tggatcctct agtaactgca ctgttaggtg cttttgatac taggaataga ataatagagg 6000 ttgaaaatca ggcgaaccct acaactgctg aaacgttaga tgctactcgt agagtagatg 6060 acgcgacagt agctataagg agcgctataa ataatttagt cgtagaattg atcagaggaa 6120 caggatcata caataggagt gctttcgaag gctcttcagg tttggtctgg acttctggtc 6180 ccgcaacttg agataatcat gttgcgtaat aaataacgga ttgtgtccgt aatcacacgt 6240 ggtgcgtacg ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg 6300 ttcgcgcggg tcaaatgtat atggtgcata tacatccgta ggcacgtgat aaagcgaggg 6360 attcgaattc ccccgttacc gccggtaggg gccca 6395 //