ID JX559643; SV 1; linear; genomic RNA; STD; VRL; 3769 BP. XX AC JX559643; XX DT 07-NOV-2012 (Rel. 114, Created) DT 07-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate 3138-07 segment RNA2, complete sequence. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3769 RA Rott M.E., Belton M.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-3769 RA Rott M.E., Belton M.; RT ; RL Submitted (29-AUG-2012) to the INSDC. RL Canadian Food Inspection Agency, Centre for Plant Health, 8801 East Saanich RL Rd, North Saanich, British Columbia V8L1H3, Canada XX DR MD5; a071beae5d76c7d52c9f325949809ee4. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCbio Genomics Workbench v. 4.6 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3769 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera" FT /isolate="3138-07" FT /mol_type="genomic RNA" FT /country="Canada" FT /collection_date="Sep-2010" FT /db_xref="taxon:12274" FT CDS 219..3551 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:K7QSQ3" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7QSQ3" FT /protein_id="AFV73369.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVEQWLAAINSDPSFRQTVKE FT DVQENRTEPSAIRMFSWKIGSGPIDNPDMLDWQFVLTGKVSRQPTGPAKAQEVVVPPQP FT QKVEIPSPPPPPAPYFRPIGAFAPTRSGFIRATVERLTREREESRAAALFAELPMEYPQ FT GAPLKLSLAMKFAMLKHTTWRKWYDASDERLLEAHPGGPCLPPPPPIQSPPSFQERVRE FT FCRMKSCARVFALETSSGLNKAWIGSINIPSTSVCCADGRTTGGQTIAQEADPLQHRVS FT TSVAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLL FT PPLRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMS FT AVVIDALEIAINPFGMPGNPTDLTVVATYGHERNMTRAFIGSASTFLGNGLARAIFFPG FT LQYSQEEPRRESIVRLYVASTNATVDADSILAAISVGTLRQHIGSMHYRTVVNTVHQAQ FT VQGTTLRATMMGNTVVVSPEGSLVTGTPEARVEIGGGSSIRMVGPLQWESVEEPGQTFS FT IRSRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMI FT SDFKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITASADPVY FT TLSVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQ FT AVVELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALKSAGLTLGQ FT VPMVGTTKVYNLNSTLVSCVLGMGGTIRGKVHICAPIFYSIVLWVVSEWNGTTMDWNEL FT FKYPGVYVEEDGSFEVKIRSPYHRTPARLLAGQSQRDMSSLNFYAIAGPIAPSGETARL FT PIVVQIEEIVRPDLSIPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGE FT NPFAAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTVTKLVGDKAMGLDGPSQIFAIQ FT KLEGVTDLLIGNFAGANPNSHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTS FT FPV" XX SQ Sequence 3769 BP; 918 A; 808 C; 950 G; 1093 T; 0 other; ggtttcttac gttaccgtga agttactttc ctcaagccaa gagtttaaga aactcaaaag 60 aaacactgcg aagagtttaa gaaactcaca aagcgaagag tttaagaaac tcaccattgc 120 tttttccgcg cttttatttt gcgctttatt tgtttagcat tttatttagt tcttttaaaa 180 agcttttgtt ttgtttttcc tatcttttct ttgcccttat gggcaaattt tactactcca 240 acaggcgtct tgcctgttgg gctgctggaa agaaccccca tctagggggt tctgttgaac 300 aatggctggc ggccattaat tctgatccct ccttccgcca aactgttaag gaggatgtcc 360 aggaaaaccg gactgagcct tcggccatcc ggatgttttc ctggaaaatt gggtcagggc 420 ccattgacaa ccctgatatg cttgattggc agtttgtcct tacgggcaag gtgtccaggc 480 agccgaccgg gccggctaaa gcccaagagg tggtggtgcc accacaaccg cagaaggtgg 540 agattccatc accacctcct cccccggctc cctattttag gcctattggg gcttttgcac 600 caacccggtc cgggtttatt cgggccactg tggaaagact cacccgggaa cgggaagagt 660 cgagagctgc ggcactcttt gccgaattgc caatggagta tcctcagggt gctcctttga 720 agttgagcct ggcgatgaaa ttcgccatgc tcaaacatac cacttggagg aagtggtatg 780 atgccagtga tgagcgcctc ttggaggctc atcctggcgg tccttgtctt cctcctcctc 840 ccccaatcca aagtccgccc tcttttcaag agagggtgag ggagttttgc aggatgaagt 900 cctgcgccag ggtttttgcc ttggaaacct cttcaggtct gaataaggcc tggataggtt 960 caataaacat ccccagcact tctgtgtgct gtgcggatgg aaggactacc ggtgggcaaa 1020 caattgctca agaagctgat cccttgcaac atagggtcag cacatccgtg gcccccggta 1080 gggcacaatg gatctctgaa cgcaggcaag ctctgcgaag gagagagcaa gcaaatagct 1140 tgcagggtct tgctgctcaa actgatatga cttttgagca ggccaggaat gcttatcttg 1200 gtgctgctga catgattgag caaggcctac cgttacttcc tcctctgcgc aatgcttatg 1260 cccctagggg tttgtggagg gggccctcaa ccagagccaa ttacacgtta gattttaggc 1320 tcaatggtat tccgaccggg acaaatacat tggaaatact atacaatccc gtgtcggaag 1380 aagagatgga agagtaccgg gataggggta tgtcagccgt ggtgatcgat gcgctagaaa 1440 tagccataaa tccgtttggc atgcccggga atccaacgga tttgaccgtc gtagcaacat 1500 atgggcatga gcgcaatatg acacgtgcct ttattggatc tgcttccacg ttcttaggga 1560 atgggttagc tagagccatt ttttttcctg gcttgcaata tagtcaggaa gaaccaaggc 1620 gcgaatctat agttcgccta tatgttgctt ccactaatgc cactgtagac gctgattcga 1680 tcttggcagc cattagtgtt ggcactttgc gtcaacacat tggctccatg cattatcgaa 1740 cggtggttaa tactgtgcac caggcccagg tgcaaggaac gacgctcagg gctactatga 1800 tgggcaatac cgttgtagtt tcacctgaag gaagcctggt tactggaacc cctgaagcaa 1860 gagttgaaat agggggtggt tctagtatca gaatggtggg gcctctgcaa tgggagagtg 1920 tagaggaacc agggcaaacc ttctctatca gaagtcgttc acggtctgtg aggattgata 1980 gaaatgttga tcttcctcaa cttgaggctg agcccagatt gagctcaacc gtgagaggat 2040 tagctggtag aggagtggtt tatattccca aggattgcca ggcaaatagg tacttgggca 2100 ccctgaacat acgtgatatg atttcagatt ttaagggtgt ccagtatgaa aagtggataa 2160 ctgcaggatt agtcatgcct actttcaaga tagttgttag gctacctgca aatgccttca 2220 ctggactgac gtgggtgatg agctttgatg cttataatcg gataactagt agaattactg 2280 ctagtgcgga tcctgtatac accctgtcag tcccacattg gcttatccat cataagttgg 2340 gcacgttttc atgtgaaata gattatggag agttgtgtgg ccatgctatg tggtttaagt 2400 ccacaacatt tgaatctcca aggttacatt tcacgtgctt aacgggcaac aacaaagagt 2460 tggcggcaga ctggcaagct gtcgttgaac tatatgctga attggaagag gccacttctt 2520 ttcttgggaa accaactctg gtttttgacc caggtgtttt tgatggtaaa ttccaatttc 2580 ttacttgccc tcccatattc tttgatctaa cagccgtcac ggctcttaag agtgctgggc 2640 tgacattagg acaagtccca atggttggca ctaccaaggt ttataaccta aacagtactc 2700 ttgtgagttg tgttctgggt atggggggta ctattagagg aaaggttcac atttgcgcac 2760 caatcttcta tagtattgtt ttatgggttg ttagtgagtg gaacgggacc actatggatt 2820 ggaatgaact tttcaaatat cccggggtgt atgtggaaga agatggaagc tttgaagtta 2880 aaattcgctc tccatatcac cgaacgcctg ctagattgct tgccggccaa agtcagaggg 2940 acatgagctc tctaaacttt tatgcaatag caggtcctat cgctccatcg ggtgagactg 3000 cacgacttcc catcgttgta cagattgagg aaattgtgcg ccctgatctc tctataccga 3060 gctttgaaga tgattacttt gtgtgggtgg atttttctga gttcactctc gataaggaag 3120 aaattgagat cggttctcgt ttcttcgatt tcacttcaag cacctgtaga gtgtctatgg 3180 gagaaaaccc gttcgctgca atgattgctt gtcatggatt gcatagtggt gttttggacc 3240 tcaagctcca atggagtctg aataccgagt ttggcaagag cagtgggagc gttactgtta 3300 cgaagctggt gggtgataaa gccatgggtc tggacggacc ttctcagatt tttgccatac 3360 aaaagctgga aggagttaca gatttgttga ttgggaattt tgcaggagca aatcccaact 3420 cacatttctc tctctatagc cgatggatgg caattaaatt ggaccaagca aagagtatta 3480 aagtactccg tgtcttgtgc aagcctcgtc caggtttcag tttttatgga agaaccagct 3540 tcccagtcta gggtatctga ctttaaaaga cccatttaca catgcgtgct ttattagttg 3600 tgcatttgaa tattagagct tttgtattgt aatttgtttt aacttgtttt ctgcttttgc 3660 gtgtttaatt tcatgctttt agtggcgaca gtgtgttgtt tgtcctttgg acacacttgc 3720 cttgttggac acaaaaagat tttcttttct ttttactgtt ttgcaaatt 3769 //