ID JX559642; SV 1; circular; genomic DNA; STD; VRL; 3207 BP. XX AC JX559642; XX DT 07-NOV-2012 (Rel. 114, Created) DT 07-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine geminivirus isolate 3138-03, complete genome. XX KW . XX OS Grapevine geminivirus OC Viruses; Geminiviridae; Grablovirus. XX RN [1] RP 1-3207 RA Rott M.E., Belton M.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-3207 RA Rott M.E., Belton M.; RT ; RL Submitted (29-AUG-2012) to the INSDC. RL Canadian Food Inspection Agency, Centre for Plant Health, 8801 East Saanich RL Rd, North Saanich, British Columbia V8L1H3, Canada XX DR MD5; e2870d5e9189b494b0b2afdab4924808. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCbio Genomic Workbench v. 4.7 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3207 FT /organism="Grapevine geminivirus" FT /host="Vitis vinifera" FT /isolate="3138-03" FT /mol_type="genomic DNA" FT /country="Canada" FT /collection_date="Sep-2011" FT /db_xref="taxon:1177191" FT CDS 282..803 FT /codon_start=1 FT /product="19.4 kDa protein" FT /db_xref="UniProtKB/TrEMBL:K7QW77" FT /protein_id="AFV73363.1" FT /translation="MGMETLNKRNRVLPECDSCSSSESSLSDIDICGDVDGLGDEALDA FT GSVYSSSQKLLVSVAKDVLLDDCDSTILDISLPSALWFLSQRYLTCCLRKELLPLPGIS FT EKQTALLRQLIRRVARRHCLFTYKCEEWFEGCLKIKEDGNEKKEPPTEAEKKAQDDWEE FT FCRKAACSAS" FT CDS 706..1380 FT /codon_start=1 FT /product="coat protein" FT /note="encodes conserved gemini coat protein domain" FT /db_xref="GOA:K7QSQ1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7QSQ1" FT /protein_id="AFV73364.1" FT /translation="MVMKKRSRQRKQRRRRRTTGRSSAVRRRARPRSRPCQFAFHGNSF FT GGTPSLFFLTPIALGTGAEDRTGPVLTVSSMYLKGVVLPTENVPDGLHDIYFWIILDRF FT PTGTDPSVSDIFTGSDNSGSMIETLTRNRLNRKRFRILGSKKLVVGVNKKPQESLPHSR FT AAFNIFQRRRLVVAFKNDVSGGGRNDVERNRIYLSAAAASGHTFKLYLNGIVNFYNGVI FT FQ" FT CDS 1361..1735 FT /codon_start=1 FT /product="14.7 kDa protein" FT /db_xref="UniProtKB/TrEMBL:K7RCS2" FT /protein_id="AFV73365.1" FT /translation="MELFFNRPRCLLWRVYDQVSEFGLYDGGEDVVDIPIVGDDEDEEM FT VTTGYGEFVKTLKRRRSERGEVTKTYKRRIALTEPDRSRTEVEELRDYLLEEDYDKHRR FT RLDLELGSGLHSPDSRCTVM" FT CDS complement(1897..2331) FT /codon_start=1 FT /product="RepB replication associated protein" FT /note="encodes geminivirus rep protein central domain" FT /db_xref="GOA:K7QTY6" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:K7QTY6" FT /protein_id="AFV73366.1" FT /translation="MLKEYITLTMNSTMQEATHRRRKSLVIEGPSKTGKTQWAISLGIH FT NYWCESVDFSLYIDDALYNIIDDIPFQYLPCKKALLGCQFNYIANEKYRPKRKIKGGIP FT SIVLCNPDNSYYDAITNYHATFKPWAEENIIFVKIDGPLY" FT CDS complement(2249..3043) FT /codon_start=1 FT /product="RepA replication associated protein" FT /note="encodes geminvirus Rep catalytic and central FT domains" FT /db_xref="GOA:K7R087" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K7R087" FT /protein_id="AFV73367.1" FT /translation="MASSSSFNLRSKNFFLTYPQCPVHKQFALDFFKSKFQKTLDYALI FT GEEKHQNGEPHLHALLIFKKRQAIRNPKHFDITISSHSYHPNITKPRDVADVLNYVGKE FT GDTVEHGTKPTLKSKKQSRELDFGEFLRVANSKDEFLQLVKQHYPYQYVLNLQRLEYFA FT AQTWPPTPTPHANQWTAWNNLPPEIHQWVQNELYVVRKSSAQRNLGPGINNFLEQETKR FT VQHIIDDKLDEYYLDYVERIYNTDDELDNAGSDAPKEEEPGD" FT CDS complement(2407..2889) FT /codon_start=1 FT /product="17.9 kDa protein" FT /note="weak similarity to conserved domain found in FT geminivirus protein necessary for efficient movement in FT plants" FT /db_xref="UniProtKB/TrEMBL:K7QW80" FT /protein_id="AFV73368.1" FT /translation="MASHTYTPCSSSKNDRLFAIQNTLTSPYRLIPITPISQSPEMSPT FT CLITSEKKEIPSSTVQSQLSNQRSNPENWILENSYELQIPKTSFCNSSNNITPTNTSSI FT YNDLNTLLLKHGLPPLPHMPISGQLGITFHQKFISGSKTNSTWYAKAQHNETLDQE" XX SQ Sequence 3207 BP; 790 A; 513 C; 823 G; 1081 T; 0 other; ggcacttccc atggtacgtg gtattcttgc ggagcaagtt tctctacttt ggcaaatgct 60 tctgattggt tggtgtggaa tatattcttt tcttttgtcg gccacttgcg tgtcttgtac 120 gcgaagctaa agtggccgca tatatgcttt tagttagggc atattattaa tggaggatcg 180 atgcgggtgg aaacgcagtt tggctgttgt gctaatttct ctctcagtat tttgggtgtt 240 gtactggtta gtattcttct ctcgtcgcat ttgtaagagg aatgggaatg gaaacactga 300 acaaacggaa tcgcgttctt cctgagtgcg attcctgcag ttctagtgaa agttctttga 360 gtgatattga tatttgtggt gatgttgatg ggttagggga tgaggcttta gacgctggat 420 ccgtttattc gtcgtcacag aaactgttag tttctgtggc taaagatgtt cttttagatg 480 actgtgattc aacgatattg gatatatcgt tgccttctgc tttatggttt ttgtcgcaaa 540 gatatttgac ttgttgtttg aggaaagaat tactgcctct gccaggtata tccgagaaac 600 agactgcttt attgcgacag ctgattaggc gtgtcgctcg tcgtcattgt ttatttactt 660 acaagtgcga ggagtggttt gagggttgtt tgaagataaa ggaggatggt aatgaaaaaa 720 aggagccgcc aacggaagca gagaagaagg cgcaggacga ctgggaggag ttctgccgta 780 aggcggcgtg ctcggcctcg tagtaggcct tgtcagtttg cattccatgg gaattctttt 840 gggggtaccc cttccctttt ttttttgact cctattgctt taggtactgg tgcggaagac 900 agaacaggtc cagtattgac tgtcagcagt atgtatttga aaggtgttgt gcttccgacg 960 gaaaatgtcc ctgatggatt gcatgatatt tatttttgga taattttgga tcggtttcct 1020 actggaactg atccttcggt atctgatata ttcactggta gtgataacag cggaagcatg 1080 attgagacat tgacgaggaa tcgtttgaat cgtaagagat ttcgtatttt gggttcgaag 1140 aaacttgttg ttggcgtgaa taagaagccg caggagtcat tgccgcattc acgtgcagca 1200 tttaatattt ttcaaagacg tcgtctggtt gtcgctttta aaaacgacgt gtctggtgga 1260 ggacgtaatg atgttgaaag gaatcgtatt tatttgtctg cggctgctgc aagtggacat 1320 acgtttaaat tgtatttaaa tggaattgta aacttttata atggagttat ttttcaatag 1380 accacgctgt ttattatggc gtgtgtatga tcaagtttct gagtttggtt tgtatgatgg 1440 tggtgaagat gttgttgata tccccattgt tggggatgat gaagatgaag aaatggttac 1500 aactggatat ggtgaattcg ttaagacgtt gaagagacgt cgatctgagc gcggagaggt 1560 gacaaagact tacaagcgaa gaattgcatt gactgaacct gatcgtagta gaactgaagt 1620 tgaagaattg agagattatt tgttagagga agattatgat aagcatagaa gacgtctgga 1680 cctggagcta ggctcaggct tgcatagtcc agacagtcgt tgtacagtaa tgtgaatgtt 1740 gtatttggat atttgaataa tagaatatgg tgcaggagtt tattaaaatt ataatgtaaa 1800 cacttcgaaa taaatcacac ttcaatacca gacaatcagg cacgatttct atatgaaaga 1860 acccagccgc gaagcggctg gctgaccttt tatttatcag tacaacggtc catcaatttt 1920 tacaaagata atgttttctt cagcccacgg cttgaatgtt gcatgataat tggtgattgc 1980 atcatagtaa gagttatctg gattacaaag aacaattgat gggatccctc ctttgatttt 2040 ccgctttgga cgatattttt catttgcaat gtaattgaat tgacaaccta ataaggcttt 2100 tttacaaggc aaatattgga atggtatatc gtcaatgata ttgtacaaag cgtcgtctat 2160 gtatagactg aagtctactg attcacacca gtagttatgt attcccaatg atatagccca 2220 ttgcgtttta cccgtcttcg atggtccttc aatcaccagg ctcttcctcc ttcggtgcgt 2280 cgcttcctgc attgtcgagt tcatcgtcag tgttatatat tctttcaaca taatccaagt 2340 aatactcgtc cagcttgtcg tctattatat gctggacgcg ttttgtttct tgttcaagga 2400 aattgtttat tcctggtcca aggtttcgtt gtgctgagct tttgcgtacc acgtagagtt 2460 cgttttggac ccactgatga atttctggtg gaaggttatt ccaagctgtc cactgattgg 2520 catgtggggt aggggtggga ggccatgttt gagcagcaaa gtattcaagt cgttgtagat 2580 tgaggacgta ttggtagggg taatgttgtt tgacgagttg cagaaactcg tctttggaat 2640 ttgcaactcg taggaattct ccaaaatcca gttctctgga ttgcttcttt gatttgagag 2700 ttggctttgt accgtgctcg acggtatctc cttcttttcc gacgtaatta agcacgtcgg 2760 cgacatctct gggctttgtg atattggggt gataggaatg agacgatatg gtgatgtcaa 2820 agtgttttgg attgcgaata gcctgtcgtt ttttgaagat gagcaaggcg tgtaggtgtg 2880 gctcgccatt ctgatgtttt tcttctccga tgagagcgta atctagggtt ttttggaact 2940 tggatttgaa gaagtctagg gcaaactgtt tatggactgg gcactgaggg tatgtgagga 3000 agaagttttt tgagcggaga ttgaaggagc tacttgatgc catcttggtt gtataagatg 3060 ggttggtact ctttatatag tggttgatta gatgacgtca ggtgatgtca gctattttgt 3120 cttattatcc cccaattcta gcctatagtt ttggtggtat tttggtactc agggcaaaat 3180 ttgtattgaa gtgccattaa tattact 3207 //