ID JX559641; SV 1; linear; genomic RNA; STD; VRL; 7346 BP. XX AC JX559641; XX DT 07-NOV-2012 (Rel. 114, Created) DT 07-NOV-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine virus A isolate 3138-03, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7346 RA Rott M.E., Belton M.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-7346 RA Rott M.E., Belton M.; RT ; RL Submitted (29-AUG-2012) to the INSDC. RL Canadian Food Inspection Agency, Centre for Plant Health, 8801 East Saanich RL Rd, North Saanich, British Columbia V8L1H3, Canada XX DR MD5; 00b7a264aa080427952a91b669f9ea5b. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCbio Genomic Workbench v. 4.6 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7346 FT /organism="Grapevine virus A" FT /host="Vitis vinifera" FT /isolate="3138-03" FT /mol_type="genomic RNA" FT /country="Canada" FT /collection_date="Sep-2011" FT /db_xref="taxon:35288" FT gene 74..5206 FT /gene="ORF1" FT CDS 74..5206 FT /codon_start=1 FT /gene="ORF1" FT /product="195 kDa replicase" FT /note="encodes 2OG-Fe(II), viral RNA helicase and FT RNA-dependent RNA polymerase domains" FT /db_xref="GOA:K7QW75" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:K7QW75" FT /protein_id="AFV73358.1" FT /translation="MSISVSSQRVAASNLFTNGAEEQIKAIKELKSKRLLETELGLDGL FT FDYFIPDSVREILTGYGMEFSVHSFQGHAHPISKMIENHMLYRIAPHYFSNRTLIISCK FT ESKVKRLRVSNKNRDFNFTQYNRLVHAKDHHRYENATRDLDVGSLCGVINLEEATECVF FT IHDEVQYWSLDEMQRFLGSLKHVKRVVYSIVYPAEVDAGFSQSLFPEAYTFDLKDGRLT FT WYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTVGAHHIFSAVLGSFLTEDS FT YKYDNFTIINPNDILRGRRGCKPLYLRARMIRPTLLYLCALKKADSNSAVAKLRMLSNR FT EENMDEALFVAQLAKQIKDTGLYDRMGNPSIKSLLSEAFHDIAGNLFTRLFNKPEYDAR FT CLEKFIRACETTEFHLPRRFMERVYKGSTVMIQRVVDWVEDEEANALNEVNLQELSRND FT RQPESYGTSELHRETRRAYVPITRILRSHALILESAKTVELNRIVIVCSARSLSNLRLF FT LVRLGRFRYMESRGLTDVQDMQEALEDGLLNEEEVEARLFTYQGSDSEGEAVEECVTGG FT LETNNDKSGTPSFSKVRKLLEENIFTDQLKGREVAFYSRNSKVYNYNGGSHRSLGWDEA FT LDALVAELGLDESYDHCLIQRYKKEGSIGFHADDEPCYLPGGSVVTVNLNGEAIFEVKE FT NKSGTTEEIHMKDGDVYTMGPGMQQTHKHRVRSLSDGRCSITLRNKTVDYEAQRKEETS FT DYEEDVADVDEGIEYLQRNSANMCSLKAIAEHMQLSIPTVVSIVNGESPQTLKEIESGG FT VSVATLVSLSRALGFPIALHGDRGFAQTQGDYRKLHLRVGDGHVEPFEGVASTGGLREA FT LLLSDGVGQGIFRVDKAKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPVEVLTSFG FT FAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCK FT AIVIDEIGLLPPGYIDLVISVFRPSTLVLLGDPLQSSYHSKRDNVVLEASQEDVFSRIK FT GALPYLCYSHRLPKNCKIFEIECMGNETEKRVTFRSKRGKDEPVICATRAMKEANGSGW FT YTVSETQGLSFKTCMIKLCEHWAKKEDEDVMVAFTRSRGEIAIDVDRKLKEMLLRTSKS FT ELLKKILSGETYRRSSIIALVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKSLLSL FT YEDIEEEEVTLEEPVALEPIRTHLPLSEKLNELVPFDLKAKEDREQYTDAGRTEQIDEE FT GYAQWSANPMSHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYLACHGIGRQMFS FT VLKETYQWRDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQ FT TCTKMEKRGVDAKAGQTIACFAHSVLCRFGPLLRQTEKAFRELLPENVMIYSQKNYMDL FT DKWAKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVLKFFLWPEEMIKEYETLKLMMGS FT ALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLSKNTPICFAGDDMYSPGVLQVRKDY FT EKTLDELTLKAKVHVSEEPLFCGWRMSPYGIIKEPNLILDRWKIAQRSGTLDLCIVNYA FT IEASFGYRLSEYLYDVNIDVDAQQELIREIVEHKHKLPKKIAGLFSDDECEAHSDGDDD FT FLLDDVGGKYRIG" FT gene 5175..5702 FT /gene="ORF2" FT CDS 5175..5702 FT /codon_start=1 FT /gene="ORF2" FT /product="19 kDa protein" FT /db_xref="UniProtKB/TrEMBL:K7QSP9" FT /protein_id="AFV73359.1" FT /translation="MMSGENIELADFLRLGLDRSTLGSGSIESLPYDKCIKLLEGLRAL FT GFSSIDNVLHVLGKGEPDRFEIYKVFRSQGVAISEALQLGLTKSFSFSPRPVSLILDDL FT LDRIARGASFLPVDLGAVNGELVINFERSRLSVDLYVNNKKVCSRISYSPGDPYYVQRR FT FSGFKGIITRAS" FT gene 5650..6486 FT /gene="ORF3" FT CDS 5650..6486 FT /codon_start=1 FT /gene="ORF3" FT /product="MP" FT /note="movement protein" FT /db_xref="UniProtKB/TrEMBL:K7RCS0" FT /protein_id="AFV73360.1" FT /translation="MSSEGSQGSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYE FT TELIERVFPRRTRKCVIHRELVVKDGRVDCDLDILDSGLDDVDEEEYPLYHVGCIVVAL FT MPHGKNLGGKVVVEVKDTRLKGPSSRISRSFMDLSKPISACADFPGYFISTTDLLNGYT FT LHLSVTTTDLDFVDGVHPFSVQLTSIGRFCGEDMKTRYAIAEASKQLHQSILNSEGDGA FT EIPPGVPVQRIPDTLVMPEVYETIKKLGLRTHGSVRKEGGDPSSDRGARARESGVE" FT gene 6410..7006 FT /gene="ORF4" FT CDS 6410..7006 FT /codon_start=1 FT /gene="ORF4" FT /product="CP" FT /note="coat protein" FT /db_xref="GOA:K7QTY4" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:K7QTY4" FT /protein_id="AFV73361.1" FT /translation="MAQFARRGEIRAVIEELVLARAELSEDTSTHGYDRTMYLNTLFGY FT IALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRSGFKEPQVMFDFASGMDLKTLTLQ FT EATVIQSMHSRLFRTEGAKGVFNAQSSVGEQAVEI" FT gene 7007..7279 FT /gene="ORF5" FT CDS 7007..7279 FT /codon_start=1 FT /gene="ORF5" FT /product="silencing suppressor" FT /note="encodes viral nucleic acid binding domain" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:K7R084" FT /protein_id="AFV73362.1" FT /translation="MDDPSFLSGKSTYAKRRRARRMNVCKCGAILHNNKDCKSSTISSH FT KLDRLRFVKEGRVALEGETPVYRTWIKWVETEYHIYILETSDDEV" XX SQ Sequence 7346 BP; 2096 A; 1524 C; 2049 G; 1677 T; 0 other; gattcccatc gataatacgt gacaaagact tactagcacc tacgctctgc gaagtacctc 60 aaagtcagcc agtatgtcga tatcagtttc gtcccagcgt gtagcagcat ccaacctgtt 120 caccaacgga gctgaggagc aaattaaagc aatcaaggag ttgaaaagca agcggttatt 180 ggaaaccgaa cttggattgg atggcctatt tgattacttc atcccagact cagttagaga 240 gatactaact ggctatggaa tggagttcag tgtgcactcc ttccaagggc atgctcaccc 300 cataagcaaa atgatagaga atcatatgtt gtacagaata gcaccccatt atttctccaa 360 tagaacatta atcattagtt gtaaagaaag taaggtaaag cggctaaggg tctctaataa 420 aaatagggat ttcaatttta ctcagtataa tagattagtg catgctaagg accaccatag 480 atacgagaac gcaactaggg atttagatgt aggttcattg tgtggcgtaa ttaatttaga 540 ggaagccacc gagtgtgtgt tcattcacga tgaggtccaa tactggagct tggatgaaat 600 gcaaagattt ctgggctcgc tcaaacatgt gaaaagggtt gtgtacagca ttgtataccc 660 tgcagaggtg gacgctggtt tcagtcaaag cctattccca gaagcctaca ctttcgatct 720 gaaagacggg aggttaacgt ggtacccaga tggtaaagca gagggggcat acacgcagcc 780 ggtgaaccct tggttactag ggtgtagtaa aactgtagac tctgagtcta ggagctggac 840 gatcacaaag ttgcaaacag tgggggcgca ccacatcttc agtgccgttt tgggtagctt 900 cctgacagag gattcttaca agtatgacaa cttcaccatc atcaacccga acgacatact 960 caggggtcga agggggtgta agcctttgta tctcagagcc aggatgatcc gcccaaccct 1020 cctgtacttg tgcgcattga agaaggcgga ttcaaattct gcagtcgcca agctcagaat 1080 gctgagcaac cgggaggaaa acatggatga ggcactgttc gtcgcccagt tggcaaagca 1140 aataaaagac acagggctat acgacagaat ggggaacccg agcattaaaa gtctgctctc 1200 tgaggccttc catgacatag ctggcaatct gttcaccaga ctcttcaaca aaccagagta 1260 cgacgcccgc tgcctggaga agttcatcag ggcgtgtgag accacagaat ttcatctacc 1320 aaggaggttc atggagaggg tgtacaaggg cagcacagtg atgatccaga gagtagtgga 1380 ctgggtcgag gatgaagaag ccaacgcgct caatgaggtc aacctgcaag agctgagcag 1440 gaacgatcgc caacccgagt cgtatggcac atctgagcta catcgcgaga caagacgggc 1500 gtatgtaccg attacaagga tcctgagatc acacgcacta atactggaga gtgcaaaaac 1560 agtggaactg aaccggatcg taatcgtgtg ctctgcacgc tctttgtcaa acctccgctt 1620 gttcctagtc cgcctgggta ggttcagata catggagagc agagggttga cggatgttca 1680 ggatatgcag gaggctttgg aggatggcct tctaaatgag gaggaagtgg aggcaaggct 1740 tttcacatac cagggctctg atagtgaagg cgaggcagtg gaagaatgcg tcaccggtgg 1800 tttggagacc aataatgata aatctggcac cccgtccttt tcaaaagtaa ggaaactcct 1860 tgaggaaaac atcttcacgg atcaactcaa gggcagggag gtcgcttttt atagtcgtaa 1920 cagcaaggtt tacaattaca acggtggcag tcaccgatca ctcggctggg atgaggccct 1980 tgacgcgcta gtggcagagc taggcctgga tgagagttat gatcattgcc tgatccaacg 2040 gtacaagaag gaaggctcta taggtttcca tgcagatgac gagccctgtt acctccctgg 2100 tggaagtgtg gtaactgtca acctaaacgg tgaggccatc tttgaggtca aggaaaacaa 2160 aagcgggacc acagaggaga tccacatgaa agacggggac gtctacacca tggggcctgg 2220 tatgcaacaa acgcataagc atagggtgcg ttcactcagt gatgggagat gcagtatcac 2280 gctccgcaat aagacggtgg attatgaagc ccagagaaag gaggagacct cagactatga 2340 ggaagatgtg gccgatgtgg atgagggtat cgaatacctc cagaggaatt ccgctaatat 2400 gtgctcactg aaggcgatcg ccgagcatat gcagctgagc atcccaaccg ttgtctcaat 2460 tgtgaatggg gaatcccccc agaccctgaa ggagattgaa tctggaggag tcagtgtggc 2520 gaccctagtg agcctgtctc gcgcacttgg attccctata gccttacatg gtgacagggg 2580 gttcgctcaa actcaaggag actacaggaa attgcacttg agggtcgggg acgggcatgt 2640 ggaaccattc gaaggggtgg caagcacggg cggtcttagg gaggcactac tcttgagcga 2700 tggtgtaggt cagggcatct tcagggtgga caaagccaaa gcggatagat tggcacaaag 2760 cttttatagt gggtgcactg gggttctctt gggaaaatac aataaaggga agatgcattc 2820 tgctgaattg gaggaaccag ttgaggtact gacctctttt ggtttcgccg ggtccggaaa 2880 aagtcactgg tgccaaacca tactccggag ttgtgatgtt gaaaaaacac taatcattag 2940 tccaagaaag gtgctaaagg atgattgggt cggaaagatc tcaaagaagc acaaggttgt 3000 gacgttcgag gttgcattca tggatgactt tgggtgcaag gcgatagtca tcgatgagat 3060 cggattgcta ccccccggct acatagatct tgtgatctca gtcttccgtc caagcactct 3120 ggttctgtta ggggacccgc ttcaaagctc ttaccacagc aaaagagaca acgtggtcct 3180 ggaggctagt caggaggatg tcttcagcag aataaaaggg gcgctaccgt atctctgcta 3240 ttctcacaga ctaccaaaga attgcaagat attcgagatc gaatgcatgg gcaacgagac 3300 agagaaaagg gtcacattcc ggtcaaaaag gggaaaagat gagcccgtaa tctgcgcaac 3360 aagagcaatg aaggaggcca atggatctgg atggtacacg gtgagtgaga cccagggtct 3420 gagcttcaaa acatgcatga taaagttatg cgagcattgg gctaagaaag aagacgaaga 3480 tgtgatggtg gccttcacaa gatctagagg ggagatcgca atcgatgtgg atcggaaact 3540 aaaagagatg ttactgagaa catctaagag tgaactccta aagaagatcc tgagtggcga 3600 gacttacaga agatccagca tcatcgcgct tgtcaagaag cacatccccg aagcagtcat 3660 catcttcgaa gaaaatcgct tggcaagtaa tgtggattac gaggagaggc tcgccggtga 3720 cccctacctc aaatcactgc tatcgcttta cgaggacatt gaagaagagg aggttaccct 3780 cgaagaaccg gtggcacttg agcccatcag gacgcatttg cccttgagcg agaagctgaa 3840 cgagctggtc ccatttgatc tgaaagcgaa agaggaccgt gagcagtaca ctgatgccgg 3900 tcgcacggaa cagatagacg aagaagggta cgcgcagtgg agcgccaacc ctatgagcca 3960 caaagccttg tacctccggc acacatccga tgatacggct actttcatga tgtccgtgaa 4020 gaaacgtctg aggtatagaa gctacgaagg taacagaagg aaatacctcg cttgccacgg 4080 aatagggcgt cagatgttct ccgttctaaa ggagacctat caatggaggg acatagaatc 4140 attgccagaa ctcgagaaat gtgagaaaga gttcatgaga aagagagtag aaaaaagtgc 4200 agccctcatc gagcagcatt caggtcgaag tgacccagac tggccgagca actacctcaa 4260 gatcttcctg aagcaacaaa cgtgcacaaa aatggagaag aggggggtgg acgcaaaagc 4320 aggtcaaacc atcgcttgct ttgctcattc ggtgttgtgc agattcggtc cgttgctgcg 4380 ccaaactgag aaggcgttca gggagctcct cccagaaaat gtgatgatct actcacagaa 4440 aaattacatg gacttggata aatgggcaaa gacgtgggta gagggaatgc tgggcacaga 4500 ctccgattac gaggctttcg atcgatcaca agacgagaaa atattggaca tggagatcga 4560 ggtactcaaa ttctttcttt ggcctgagga aatgatcaag gaatacgaga cgctcaaact 4620 gatgatgggc agtgctctgg gtgatctggc tataatgagg ttctctggtg aattcggaac 4680 cttcttcttc aacactctga gtaatatggt attcagttgc atgaggtacc atctgagcaa 4740 aaacactccc atatgctttg cgggggatga tatgtactct ccaggggtac tacaggtcag 4800 gaaggactat gaaaagacac tggacgagtt gacgctcaaa gcaaaggtgc acgtgtctga 4860 agaacccctc ttctgcggtt ggaggatgag cccgtatggg atcataaaag aaccgaatct 4920 gattcttgat aggtggaaga tagctcaaag gtctggcact ctggacctct gcattgtgaa 4980 ctatgcaatc gaggcgagct ttgggtaccg tttaagtgag tacctatatg atgtgaatat 5040 agacgtggat gctcagcaag aattgatcag agagatagtg gagcacaagc acaagttacc 5100 aaagaagatc gctgggctgt tcagcgacga tgaatgcgag gcccacagcg acggggatga 5160 tgatttcctg ttagatgatg tcgggggaaa atatagaatt ggctgacttt ctgcgtctgg 5220 gcttggatag gagtacttta ggtagcgggt ctatagagtc attaccttat gataagtgta 5280 ttaagttgtt agagggtttg cgtgcgttgg gtttttcttc gatagataac gtgctccacg 5340 tgttgggaaa gggtgagccg gatcgctttg aaatctacaa ggtgttccgg tcccagggtg 5400 tggcaatcag tgaggctcta cagctaggct tgacaaaaag ttttagcttc agccctcgtc 5460 cagttagtct gatactggac gacttgctag atcggatagc aagaggtgca tcatttctgc 5520 cggttgattt gggtgctgta aacggggagc tagttatcaa tttcgagcgt tctaggttaa 5580 gtgtagactt gtatgtcaat aataagaaag tgtgctcaag aataagttac tcaccgggcg 5640 atccttacta tgtccagcga aggttctcag ggttcaaagg gatcatcaca cgcgcttcat 5700 gagataaagg tcttcaatgt caaacggaac accaaggatc tggagactct aaacaaggcc 5760 ctgcaccgcg gggatgttta cgagacagaa ttgattgaga gggtgtttcc gaggagaaca 5820 aggaagtgcg tgatacacag ggaattggtt gtaaaggatg gtcgggtcga ttgcgatctt 5880 gatatcttgg attcagggct tgatgatgtg gacgaagagg agtatccact ataccatgtc 5940 ggttgcatcg tggtggcgtt gatgccccat ggcaaaaatc tgggcggcaa ggtggtagtg 6000 gaggtcaagg atacgaggct aaaggggccc agctcacgga tatcaaggag cttcatggat 6060 ttatccaaac ctataagcgc ttgcgccgat ttccctggtt atttcataag caccacggac 6120 ctgctcaacg ggtacacact ccatctttca gtgacgacga ctgacctgga cttcgtcgat 6180 ggtgtgcacc cattcagcgt gcagctgaca agcattgggc gtttttgtgg tgaggatatg 6240 aaaaccaggt atgccattgc agaggcttca aagcaactac accagagcat actgaactca 6300 gaaggggacg gtgctgaaat ccctccgggg gtgcctgttc agcgaatacc ggatactcta 6360 gttatgccag aagtgtatga gacaataaag aagttaggtt tgagaactca tggctcagtt 6420 cgcaaggagg ggggagatcc gagcagtgat agaggagctc gtgctcgcga gagcggagtt 6480 gagtgaggac acgagcacac acggctacga ccgaacaatg tacctgaata ctctcttcgg 6540 gtacatcgcc ttggtcggga caagcaagaa ggcgactcat tatggagagg tagatatagt 6600 aggacctaat gctagtagga agacgggcct ggatcctaga ggaaaaataa acgtggctag 6660 catggtagca cggatgagga ctctcagcgc agctgtaagc gagggacctg tcaagggggc 6720 aaccttaagg cagatgtgcg aacctttcgc tcaaaacgct tacgacttcc tcgtggtcat 6780 ggctgaattg ggtacgtata cacagttagc atctaagatg actaggtcgg gctttaagga 6840 gccacaggtt atgtttgact ttgcgtcggg catggacttg aagaccttaa ctctacaaga 6900 agctactgtt atacagtcaa tgcactctcg cctctttcgc actgaagggg caaagggtgt 6960 gttcaacgct cagtccagcg tcggggagca agctgtcgag atatagatgg atgacccatc 7020 gtttctctcg ggtaagtcta cttatgctaa acgtaggagg gccaggcgta tgaatgtttg 7080 taagtgtggt gctatattgc acaataataa ggattgtaag tctagtacaa tctccagtca 7140 taaactcgat cgactccggt tcgttaaaga gggaagagta gcccttgagg gcgagactcc 7200 tgtttatcga acttggatca agtgggtgga gactgagtat catatatata tattagaaac 7260 ctcagatgat gaggtataat catctatcct agctatagta aataaactac ttaatggtaa 7320 agcgagctag gttgtcacac ggtgac 7346 //