ID JX556691; SV 1; linear; genomic RNA; STD; VRL; 6460 BP. XX AC JX556691; XX DT 14-NOV-2012 (Rel. 114, Created) DT 05-MAR-2013 (Rel. 116, Last updated, Version 3) XX DE Porcine astrovirus 3 isolate US-MO123, complete genome. XX KW . XX OS Porcine astrovirus 3 OC Viruses; Riboviria; Astroviridae; Mamastrovirus; OC unclassified Mamastrovirus. XX RN [1] RP 1-6460 RX DOI; 10.1128/JVI.02426-12. RX PUBMED; 23118455. RA Xiao C.T., Halbur P.G., Opriessnig T.; RT "Complete Genome Sequence of a Newly Identified Porcine Astrovirus Genotype RT 3 Strain US-MO123"; RL J. Virol. 86(23):13126-13126(2012). XX RN [2] RP 1-6460 RX DOI; 10.1099/vir.0.048744-0. RX PUBMED; 23223616. RA Xiao C.T., Gimenez-Lirola L.G., Gerber P.F., Jiang Y.H., Halbur P.G., RA Opriessnig T.; RT "Identification and characterization of novel porcine astroviruses (PAstVs) RT with high prevalence and frequent co-infection of individual pigs with RT multiple PAstV types"; RL J. Gen. Virol. 94(Pt 3):570-582(2013). XX RN [3] RP 1-6460 RA Xiao C.T., Opriessnig T.; RT ; RL Submitted (29-AUG-2012) to the INSDC. RL College of Veterinary Medicine, Department of Veterinary Diagnostic and RL Production Animal Medicine, Iowa State University, Ames, IA 50010, USA XX DR MD5; 16e45dc9011eb56d79232aeda72507e7. DR EuropePMC; PMC3497639; 23118455. DR EuropePMC; PMC5708238; 29148391. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 7 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6460 FT /organism="Porcine astrovirus 3" FT /host="Sus scrofa (swine)" FT /isolate="US-MO123" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="feces" FT /collection_date="24-Jun-2011" FT /db_xref="taxon:1254425" FT CDS join(31..2522,2522..4091) FT /codon_start=1 FT /ribosomal_slippage FT /product="ORF1ab" FT /db_xref="GOA:K7TFL0" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:K7TFL0" FT /protein_id="AFW16976.1" FT /translation="MALPFDDTLRFGSAAARVKGRRLDSVARTKLKDLLGNGPYFYDFG FT PLEVVDSSSKQLTVKMTSVQTVYVSSVVEDNSYVTYKFVPGVNEWVETEPVLHKPTALV FT GVLWREYNRYKDKTESLSQELSQLRLEHSLLRHDYERVRPQQPATPRCRLGFITKLLIG FT LLIGSLMAHSTLAYKTPGTGLLGECLDTDVIDGKQVCVNFLPWNETETNPTDGDKTTTI FT SWDHEGLLDLLVLIAPYLVSWPMIATMVGFFYVATAEQPAYMLVSLLLATYSKAQVLAL FT AGLPFMDMPSVVTLWVSMLVHSYDAVLSLWVALLLAAFTLSAGVFMPDVRYSDLVRGQL FT VVFLVLVFNYLVVMMSLPNWLVFSLVVGYRVLRVLTFLVAEKVEVRGPDGKVVETRTSM FT PAWINKASNFLQTKFHQKIRTGISPTARVIPNGVIVVETQDGSGTGFRCRNYLVTAGHV FT VTGTETPKIQWAGVPAYSKVVHRVPDKDIAFLAIPQELQDLPSYRLAKKVEDGPVVITS FT LEDSGVLSVAVTEGVIVTDSITYAVQTRNGMSGSPVTNLDGRILAVHQTNTGFTGGAVI FT LTDEDFPQPKKSAREQQLEARIKELEAAMNQSSNHEDIVELVRAAVAREFKVLRTELSA FT TTFTQAKGKNKKHHRRRGGKKRRAVWSEEEYKELLEKGFSKSQLRDMAEVLRSHEEDPF FT GSDTESEGGFPEWSDVSDAESIEREWFGQSWEDCKPVKEEPQDTLPVHLKEKYTLDAYV FT ISKEELRSFAKEFKDYVDKVEALIDKTVQQGKWLPSVNPTAIIEELNDLWFGLNMLMWE FT KGLVPFTQRKKIKRRVQKKLQGGPQEGPITYSMMDLKAWRRSLYEVERRLVPEDYPLIG FT GVPLDRPISDWDEPIDDLLLMLPAFKEDLNYTPAVWGPEAYTKSFEKFTYREPCPNIAA FT TYPREWSFATKALRREYSFLADSVLTDIAATSKNADSTPAYPKSLYWKTEADYLGERGY FT QDYIRQLDAIYSGERPDVLWYLFLKKEILKVEKVVQSDIRQIVCSDPIFARIGCHFEED FT QNVRMKNHTKTRSGQCGWSPFFGGFNDRIKRLCACDPDCYIEFDWTRFDGTIPNEVFMH FT IKRVRYSFFAKEFRTKRVKEAYQWYCEQLLHRHVVLPSGEVTLQTRGNPSGQISTTMDN FT NMVNVFLQAFEYAYLHPDCTDDELEANWSRMDTLVYGDDRLSAYVGLPANYVERVVTMY FT SDVFGMWVKPEKVIVSPSIIGLTFCGLRIISDGTAFLPVPAETNKLISALIKPTKKLQD FT VMTLYGKLLCYRILGHNLPDDNKFKAYILVALEVVARHIRTRCGDEPLRFTDEMLDRLW FT GGGPKVGYGW" FT CDS 31..2565 FT /codon_start=1 FT /product="ORF1a" FT /db_xref="GOA:K7TPS5" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:K7TPS5" FT /protein_id="AFW16975.1" FT /translation="MALPFDDTLRFGSAAARVKGRRLDSVARTKLKDLLGNGPYFYDFG FT PLEVVDSSSKQLTVKMTSVQTVYVSSVVEDNSYVTYKFVPGVNEWVETEPVLHKPTALV FT GVLWREYNRYKDKTESLSQELSQLRLEHSLLRHDYERVRPQQPATPRCRLGFITKLLIG FT LLIGSLMAHSTLAYKTPGTGLLGECLDTDVIDGKQVCVNFLPWNETETNPTDGDKTTTI FT SWDHEGLLDLLVLIAPYLVSWPMIATMVGFFYVATAEQPAYMLVSLLLATYSKAQVLAL FT AGLPFMDMPSVVTLWVSMLVHSYDAVLSLWVALLLAAFTLSAGVFMPDVRYSDLVRGQL FT VVFLVLVFNYLVVMMSLPNWLVFSLVVGYRVLRVLTFLVAEKVEVRGPDGKVVETRTSM FT PAWINKASNFLQTKFHQKIRTGISPTARVIPNGVIVVETQDGSGTGFRCRNYLVTAGHV FT VTGTETPKIQWAGVPAYSKVVHRVPDKDIAFLAIPQELQDLPSYRLAKKVEDGPVVITS FT LEDSGVLSVAVTEGVIVTDSITYAVQTRNGMSGSPVTNLDGRILAVHQTNTGFTGGAVI FT LTDEDFPQPKKSAREQQLEARIKELEAAMNQSSNHEDIVELVRAAVAREFKVLRTELSA FT TTFTQAKGKNKKHHRRRGGKKRRAVWSEEEYKELLEKGFSKSQLRDMAEVLRSHEEDPF FT GSDTESEGGFPEWSDVSDAESIEREWFGQSWEDCKPVKEEPQDTLPVHLKEKYTLDAYV FT ISKEELRSFAKEFKDYVDKVEALIDKTVQQGKWLPSVNPTAIIEELNDLWFGLNMLMWE FT KGLVPFTQRKKIKRRVQKNSKGAPKRGPLPTP" FT CDS 3895..6348 FT /codon_start=1 FT /product="ORF2" FT /note="capsid protein precursor" FT /db_xref="GOA:K7T822" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K7T822" FT /protein_id="AFW16977.1" FT /translation="MGNSFAIASLAITSLMTTSLRPTFWWPWRLLLGTSGHVVVMSHSA FT LLMRCLTGFGGADQRSDMAGDKLNASAKAAPFAKEVAKEVVKEEKKTQARRRKWYKPRR FT QQNQPQQQSKQRTTVSKQVAKKLKQEGLEGPRPRFSVRVSATIGKIGPNKEQGPELQIS FT TFLHPSLMKEPNDGTNFGPLQAASAQWGLWRLAGLKIRCTPLVGPSAVTGSVYRLSLNL FT TQSPGNTSWGGLGARKHIDVPVGKQSTWNLHRGDLAGPRQTWWMTDTNEEGGQSCGPMV FT EIHGLGKTSSTYKDADWVGDLFIVEVVGRWEFTNYNAKPALGTLDRVTEDVQAGIEVGS FT DGIMTMTLPQRSNLVKHMSTAYEKLPLNALTVGETIWQIVDEGAGLISSAVPPPFGWLI FT KGGWWFVKKAIGRSNTDGTYYVYASLADAQNNKPVEATPFSRIPAQTTIASTQINAPNT FT GPSSSLVISTPSGLLPEDLPSTATTFEVVGYVSAMFSVNQNTTHSPVINNVFPVKGQDA FT SDYAFSIMQNPTQVAGKGMGCLIFQSEPVFLRLNLDTSASTVDNIFLLDDTPGIGWTVN FT FNLPSNPIANCADVLAYKHEKWGDDLKFSSWLVRFTKEIPESSGNFYCLVSAPVISNVD FT QAPVTIVFNKVATPKLSTSSSLSHMRVSVSSVQPGTYGVIYTLGNYNVTDATGVASAPT FT LTGPVNDRVVPGPFRAVTGITPISLTTQLPNYFPLWANFFRPASRPTMIDTLMEQIQQR FT FGLKPVEPDYNSDDESDVEPTAASKFAKHSMYDALRDSDWDHVDADALIHFISKASNRP FT RGHAE" XX SQ Sequence 6460 BP; 1614 A; 1486 C; 1541 G; 1819 T; 0 other; ccaaatagag ctgcccgttg gtccggccct atggcgttgc cttttgacga cactcttagg 60 tttggttcag ccgcggcccg tgtgaaaggc cgtaggctag attcggttgc acgtactaag 120 ctaaaggatt tgcttggtaa tggaccttat ttctacgatt ttggtccttt agaagtcgtt 180 gactcttcat caaagcagtt gactgtgaaa atgacttctg tgcaaaccgt ctatgtgtcg 240 tcggttgttg aggacaactc ttatgttacc tataagtttg tgcctggcgt caatgaatgg 300 gttgaaacag agcctgttct gcataaaccc acagctttgg ttggtgttct ctggcgtgaa 360 tataatcgct ataaggacaa aactgagtct ctctcccaag agctctccca acttaggctt 420 gaacactcac tgttgcgcca tgattatgaa cgtgtacgtc ctcagcaacc ggcaacccct 480 aggtgccggt tagggtttat cacaaagtta cttattggct tgcttattgg ctctttaatg 540 gcacactcca cccttgcata caaaacacct gggactggtt tgttgggtga gtgcttggat 600 accgatgtta tcgacggtaa acaagtttgt gtgaactttc tcccttggaa tgagactgag 660 accaatccca ctgatggcga taagactact actattagct gggatcatga aggtcttctt 720 gacttgttag tcttgatagc tccttatctg gtctcctggc ctatgatagc aacaatggtt 780 ggcttcttct atgttgccac agctgaacaa cctgcttaca tgctggtttc cttactcttg 840 gcaacatatt caaaggccca agttctggcc cttgctggcc taccattcat ggatatgcca 900 tcagttgtta cgctttgggt ttcaatgctt gtccattcat atgatgctgt cctttcattg 960 tgggtggctc ttcttctggc cgcatttacc ttatcagcag gtgtcttcat gcccgatgta 1020 cgctactctg acctggtccg tggccagtta gtggttttcc ttgttctcgt ctttaactat 1080 cttgttgtta tgatgtcttt acctaactgg cttgtcttct cccttgtcgt tggttatagg 1140 gtcctgcgtg tcttgacttt tctcgtcgct gagaaggttg aggtccgcgg ccctgacggt 1200 aaggttgtag aaactcgtac ctccatgcct gcgtggatta ataaggcatc taactttttg 1260 caaactaaat tccatcagaa gataagaaca ggtatttcac ccacagcacg ggtaatccca 1320 aatggggtta tcgtcgttga gacccaggat ggctcaggaa caggttttag gtgccgtaac 1380 tacttagtca ctgcaggaca tgttgtgacg ggcacggaaa cacccaagat ccagtgggct 1440 ggtgtccctg cctactctaa agttgtccat cgtgtgccgg ataaggacat agcttttctt 1500 gccatccctc aagagctaca ggatctgccc tcctaccgtc tggcaaagaa ggttgaggat 1560 ggccctgtag ttatcacatc tttggaagat tcaggtgttt tgtcagttgc tgtcactgaa 1620 ggtgttatag tgactgattc cataacttat gccgttcaaa ctcggaatgg tatgagtggt 1680 tcacctgtta ctaacttgga tggtaggatc cttgcagtac accaaactaa taccggcttt 1740 actgggggcg ccgtcatatt gactgatgag gactttccac aacctaagaa gtcagcccgt 1800 gaacagcaac ttgaagctcg tatcaaagag cttgaggcag caatgaatca gtcatctaat 1860 catgaagaca ttgtggagct tgtcagagct gcagtggccc gagaatttaa agtgcttcgc 1920 actgagcttt ctgccaccac ctttacccag gcgaaaggta aaaacaagaa acatcatcgt 1980 cgtcgtggtg ggaagaagcg ccgtgctgtc tggtcagaag aagagtacaa ggaactccta 2040 gagaagggtt tctccaaatc acaactacgt gacatggccg aggttcttag gtctcatgag 2100 gaagatccgt ttggttctga cactgaatcg gaagggggtt ttcctgaatg gtccgatgtt 2160 agtgatgctg aatcaattga acgggagtgg tttggtcagt cctgggaaga ctgtaagcct 2220 gttaaggaag agcctcaaga cacacttcct gtgcatctca aagagaagta caccttggat 2280 gcctatgtca ttagcaaaga agaattgaga tcttttgcta aggagttcaa agactatgtt 2340 gacaaagttg aagcactaat tgataaaact gttcaacagg gtaagtggtt accatcagtt 2400 aaccccacag ctataattga ggaacttaac gatctatggt ttggcctcaa catgctgatg 2460 tgggagaaag gcttggttcc ttttactcaa aggaagaaaa tcaagcgtag ggttcaaaaa 2520 aactccaagg gggcccccaa gaggggccca ttacctactc catgatggac ctcaaagctt 2580 ggcgacgctc cctgtatgag gttgagcgtc gcttagtgcc agaggactac ccgcttattg 2640 gtggggtgcc cctggacagg cctatctctg actgggatga acctattgat gacttactct 2700 taatgttgcc agcatttaaa gaagatctta attacactcc tgctgtttgg ggacctgagg 2760 cctatactaa atcttttgaa aaatttacct atagagagcc ttgccctaat atagccgcca 2820 cgtacccacg tgagtggtct tttgcaacaa aagctctgag gagggagtac tcttttcttg 2880 ctgattctgt tttgactgac attgctgcta catctaagaa tgctgactcg accccagctt 2940 accctaagtc tctttattgg aaaactgaag cagactatct tggtgagcga ggatatcagg 3000 attacattag gcaattggat gccatttact ccggagaacg tccagatgtc ctatggtacc 3060 ttttcttaaa gaaagagatc ctgaaagtgg agaaagttgt gcaatctgat ataagacaaa 3120 tcgtttgttc tgaccctata tttgcacgta taggatgtca ctttgaagaa gatcaaaatg 3180 tcaggatgaa aaaccacact aagacacgct ctggccaatg tggttggtcg cccttctttg 3240 gtggcttcaa tgacaggatc aagcggctat gtgcttgtga ccctgactgt tacatagaat 3300 ttgattggac acgctttgat ggtactatac ccaatgaggt gtttatgcac atcaagagag 3360 tccgctactc cttctttgcg aaggagttta ggacgaagcg tgtcaaagaa gcttaccaat 3420 ggtactgcga acaactttta cacaggcacg ttgtgctccc ctcgggcgag gtgacattgc 3480 agacccgtgg aaatccttct ggacaaatct ccactaccat ggacaataat atggtgaatg 3540 tgtttcttca agcatttgag tacgcctatc tgcacccaga ctgtacagat gatgagcttg 3600 aggcaaactg gtctcgtatg gacaccctag tctatggtga cgatagacta tcagcatatg 3660 ttggcctacc cgccaattat gtggagaggg ttgtgacaat gtattcagat gtctttggta 3720 tgtgggtgaa accagaaaag gttattgtct cccccagtat cataggtctc actttttgtg 3780 gtcttagaat tattagtgat ggtaccgcct tcttacctgt tccagctgag accaataagc 3840 ttatctctgc tctcattaag ccaaccaaga aattacaaga tgtgatgacc ctctatggga 3900 aactcctttg ctatcgcatc cttggccata acctccctga tgacaacaag tttaaggcct 3960 acattttggt ggccttggag gttgttgcta ggcacatcag gacacgttgt ggtgatgagc 4020 cactccgctt tactgatgag atgcttgacc ggctttgggg gggcggacca aaggtcggat 4080 atggctggtg ataagctcaa cgcatctgcc aaagcggcac ctttcgctaa ggaggttgcc 4140 aaggaagttg ttaaggagga gaaaaaaact caggcacgta ggcggaaatg gtataagccc 4200 cgtcgacaac aaaatcagcc ccaacaacaa tccaagcaac ggactactgt gagcaaacaa 4260 gttgcaaaga aattaaagca ggaaggcttg gaaggaccac ggccccgctt ctcagtgcga 4320 gtctcggcaa ctattgggaa gatagggccc aataaagaac agggacctga acttcaaatt 4380 tcaacttttc ttcatccctc ccttatgaag gaaccaaatg atggcaccaa ctttgggcct 4440 ctacaggccg cttcagcgca gtggggcttg tggcgccttg caggcttaaa gatacgctgt 4500 acgcccctgg ttgggccgtc agcggtgaca ggctcagttt ataggctttc cttgaatctt 4560 acacaatcac ccggtaacac ttcctggggt ggtttgggtg cacgtaaaca tattgacgtg 4620 ccagttggga agcagtcaac ttggaacctt cataggggtg acttggccgg cccgcgacag 4680 acgtggtgga tgactgacac taatgaggag ggcggtcaat cttgtggacc tatggttgag 4740 atccatggct tagggaaaac ttcttctact tataaagacg ccgactgggt tggtgatctt 4800 tttattgtag aggtggttgg acgctgggag ttcaccaact acaatgccaa accagccctt 4860 ggaacactag atcgtgtgac cgaggacgtt caagccggta ttgaggttgg ctcggacggg 4920 atcatgacta tgactctccc ccagcgttct aatttagtta agcatatgtc cacagcttat 4980 gaaaagctac cactgaatgc ccttacggtg ggtgaaacca tctggcagat agttgatgaa 5040 ggtgccggcc tcatttcatc tgcggtgccc ccgccttttg gctggctcat aaaaggcggt 5100 tggtggtttg ttaagaaagc tattggtagg tctaacacgg atgggactta ctatgtctac 5160 gcttctcttg cagacgctca aaataacaaa cctgttgagg caactccttt ttcacgtata 5220 cctgcccaga ccaccattgc atccacccag attaatgcac ctaacactgg gccatcttct 5280 tctctggtta tctctacccc ttcgggtttg ttaccagagg atcttccatc cacggccacc 5340 acctttgagg ttgttggtta tgtgtcagcc atgttttctg ttaaccagaa tacaacacat 5400 tccccagtta ttaataatgt gttcccagta aagggccaag atgctagtga ttacgcattt 5460 tccattatgc agaatcctac ccaggtagct ggtaaaggca tgggttgtct aatctttcag 5520 tctgagccgg tatttcttag gttaaaccta gacacgtcag cgtccacagt agataatatc 5580 ttcttgcttg atgacacacc tggtatcggc tggactgtta atttcaatct tccatctaac 5640 ccaattgcca actgtgcaga tgtgttggcg tataagcatg agaagtgggg agacgacctc 5700 aagttctcat cctggcttgt gcgcttcacg aaggaaatcc ctgagtcatc tggcaacttc 5760 tactgccttg tttctgctcc agtcatttcc aatgtggacc aggcgccagt caccatagtt 5820 tttaataaag tggcaactcc taagttgtcc acttcttcct cgttgtcaca tatgcgggtt 5880 tctgtctcct ctgtgcaacc tggtacctat ggtgtcattt acacccttgg caactataat 5940 gtgactgacg cgactggagt ggcctctgca ccaaccctaa cgggtcctgt taatgatagg 6000 gtagtacctg gcccctttcg tgcagtaact gggattacac ctatttcgct cacgactcag 6060 ctcccaaatt actttccctt gtgggcgaac ttctttcggc cggcatcccg tccgaccatg 6120 attgacactc tgatggagca aattcagcaa agatttggtc tgaagcccgt tgagccagac 6180 tataattctg atgatgagag tgatgtagag cctactgctg cttccaaatt tgccaagcac 6240 agcatgtatg atgctctccg tgattctgat tgggatcacg ttgatgccga tgctctcatc 6300 cattttattt cgaaggcatc taatcgcccc cgaggccacg ccgagtagga acgagggtac 6360 aggggcccag atctttaatt gatttctttc agatttcttt taaattgatt ttcttttttt 6420 tctttaggca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 6460 //