Dbfetch
ID JX547015; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC JX547015; XX DT 31-OCT-2012 (Rel. 114, Created) DT 16-JUN-2013 (Rel. 117, Last updated, Version 4) XX DE Tomato leaf curl virus strain Antiyur [Erode; Tamil Nadu] segment DNA-A, DE complete sequence. XX KW . XX OS Tomato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Deivamani M., Ganapathy T., Rabindran R., Dasgupta I., Nagarajan P.; RT "The molecular characterization of Tomato leaf curl virus in different RT districts of Tamil Nadu, India"; RL Unpublished. XX RN [2] RP 1-2760 RA Deivamani M., Ganapathy T., Rabindran R., Dasgupta I., Nagarajan P.; RT ; RL Submitted (28-AUG-2012) to the INSDC. RL Plant Pathology, Tamil Nadu Agricultural University, Lawely Road, RL Coimbatore, Tamil Nadu 641003, India XX DR MD5; 4304c24aca308d1c571685e01214c2ce. XX CC ##Assembly-Data-START## CC Assembly Method :: Gene Runner v. 4.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Tomato leaf curl virus" FT /segment="DNA-A" FT /host="tomato" FT /strain="Antiyur [Erode; Tamil Nadu]" FT /mol_type="genomic DNA" FT /country="India:Tamil Nadu, Anthiyur" FT /isolation_source="leaf" FT /collection_date="21-Apr-2012" FT /db_xref="taxon:28350" FT gene 145..492 FT /gene="V2" FT CDS 145..492 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:K4PKN9" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K4PKN9" FT /protein_id="AFV60466.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVENTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNNCHARLEGTPPSQLRQPICEPCCCPHCPRHQSKGMGRPAHVS FT EAQDLQNVQDP" FT gene 305..1075 FT /gene="V1" FT CDS 305..1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:K4P9Y4" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4P9Y4" FT /protein_id="AFV60467.1" FT /translation="MSKRPAGIIIATPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT DRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSFDAKNDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPSGTPSDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRRFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1072..1476) FT /gene="C3" FT CDS complement(1072..1476) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:K4P7P1" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4P7P1" FT /protein_id="AFV60468.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHQNRPFLMNQDI FT ITVQIQFNHNLRKVLGIHKCFLAYRIWMTSQPPTGRFLRVFRTQVLKFLNNLGVISLNN FT VIRAVNYVLWDALTQTTFVENSHIIKFNLY" FT gene complement(1217..1621) FT /gene="C2" FT CDS complement(1217..1621) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /db_xref="GOA:K4PA69" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4PA69" FT /protein_id="AFV60469.1" FT /translation="MQPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLPCGCSYFIALA FT CHDHGFTHRGAHHCSSSREWRVYLGDSKSPIFQDNRAPKPALLDEPRHHHRPDTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGI" FT gene complement(1524..2609) FT /gene="C1" FT CDS complement(1524..2609) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:K4P7V8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4P7V8" FT /protein_id="AFV60470.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQLLNIQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKSYM FT EKDGDVIDHGVFQVDGRSARGGCQSANDAYAEAINSGSKAQALNILREKAPKDFVLQFH FT NLNSNLDRIFTPPMEVYVSPFLSSSFDQVPEELEEWACENVVSSAARPIRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTNYGKPVQIKGGIPTIFLCNPGPNSSYKEYLQEEKNSALKNWALKNATFVTLEGPL FT YSGTNQSTAQASQEGDQTSTS" FT gene complement(2159..2452) FT /gene="C4" FT CDS complement(2159..2452) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4PKP4" FT /protein_id="AFV60471.1" FT /translation="MGLLTCMCSSSSKESSSAKTIDSSTSHPQLGQHISIRTFRELRAQ FT AMSNPTWKKTETSLIMEFSKSMDDQLEEVANLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2760 BP; 725 A; 554 C; 631 G; 850 T; 0 other; accggatggc cgcgattttt ttttttggac cccacaactt actaactggc aaagacatgt 60 ggaccaatca cctgacgcgc tcaaagctta attgttttgt ggtcctctat ttaaacttgg 120 tcaccaagta ttgtacttcg cactatgtgg gatccattgt taaacgagtt tcctgaaacc 180 gttcacggtt ttagatgtat gttagcggtt aaatatctgc agttagtaga aaatacttat 240 tcacctgaca cattaggtta cgatttaatc agggatttaa tttcagtaat cagggctaga 300 aattatgtcg aagcgaccag caggtataat aattgccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc catatgtgag ccgtgctgct gcccccattg tccgcgtcac 420 caaagcaaag gcatgggccg accggcccat gtatcggaag cccaggatct acagaatgta 480 caggacccct gatgtgccta agggctgtga gggtccgtgt aaggtccagt cgttcgatgc 540 taagaacgat attggtcaca tgggtaaggt gatctgtttg tccgatgtta cgaggggaat 600 tgggctgacc catcgagtgg gtaaacgttt ttgcgttaag tcattgtatt ttgtcgggaa 660 gatctggatg gacgagaata ttaaggtgaa aaaccacacc aacaccgtta tgttttggat 720 agtacgtgat aggcgtccta gtgggactcc cagtgatttt cagcaggttt ttaacgtcta 780 tgataatgag ccctctactg cgactgttaa gaatgaccag cgtgatcgct ttcaagtctt 840 acggaggttt caggcgactg ttactggagg acaatatgca gcaaaggagc aggcgataat 900 tagaagattt tatcgtgtta ataattatgt agtttataat caccaggaag ctggtaagta 960 cgaaaatcat actgagaatg ctttgttgtt gtatatggca tgtactcatg cctctaatcc 1020 tgtgtatgcg actctcaaag tgaggagtta tttctatgat tcagttacaa actaataaag 1080 attaaatttt attatatgcg aattttctac aaatgttgtt tgcgtcaatg catcccatag 1140 tacataattt actgctctaa ttacattatt caaactaatt acacccaaat tattaagaaa 1200 tttcaacact tgtgtcctaa atacccttaa gaaacgacca gtcggaggct gtgaggtcat 1260 ccagattcgg taggctagga aacatttgtg tatccccaac actttcctca ggttgtgatt 1320 gaactgtatc tggacggtga tgatgtcttg gttcatcaag aagggccggt tttggtgctc 1380 tgttatcttg aaatataggg gattttgaat ctcccagata aacacgccat tctctgcttg 1440 agctgcagtg atgagctccc ctgtgcgtga atccatggtc gtggcaggct aatgctatga 1500 agtaagaaca gccgcacggt agatcaactc gtcgacgtct ggtccccttc ttggctagcc 1560 tgtgctgtac tttgattggt acctgagtag agtgggcctt cgagggtgac gaaggttgca 1620 ttctttaaag cccagttttt aagcgcactg tttttctctt cttgcagata ctctttatag 1680 cttgaattgg gtcctggatt gcagaggaag atagtgggaa ttccgccttt aatttgaaca 1740 ggtttcccgt aattggtgtt gctttgccag tctctttggg cccccatgaa ctctttaaag 1800 tgctttagat agtgcggatc gacgtcatca atgacgttgt accacgcatc attattgtat 1860 actttcggac tcaggtcgag atgaccacac aggtagttat gtggtcctag tgacctagcc 1920 cacattgttt ttccggtacg actatcacct tcaattacaa tacttattgg cctgataggc 1980 cgcgcagcgg aactgacaac gttttcacat gcccactctt caagttcttc tggaacttgg 2040 tcgaaagaag aagataaaaa aggtgaaaca taaacctcca ttggaggtgt aaaaatccta 2100 tctaaattag aatttaaatt gtgaaattgt aaaacaaaat ctttgggagc tttctccctt 2160 aatatattga gggcctgagc tttggaccct gaattgattg cctcggcata tgcgtcgttg 2220 gcagattggc aacctcctct agctgatcgt ccatcgactt ggaaaactcc atgatcaatg 2280 acgtctccgt ctttttccat gtaggatttg acatcgcttg agctcttagc tccctgaatg 2340 ttcggatgga aatgtgctga cctagttggg gatgtgaggt cgaagaatct attgtttttg 2400 cactggaact ttccttcgaa ctggatgagc acatgcaggt gaggagtccc atcttcgtga 2460 agctctctgc aaattctaat aaattttttg gaagttggtg tttggatatt taataattgg 2520 gaaagtgcct cttctttagt tagagagcac ttgggataag tgagaaaata attttttgca 2580 tttattttaa agcgattggg ggctgccatg ttgacttggt caattggtgt ctctcaactc 2640 tctctatgta tcggtgtatt ggagtcctat atatatggag actctaatgg cataaatgta 2700 aatattgaac tttaaatcaa aacccttaac gctccaaaaa gcggccatcc gtataatatt 2760 //