ID JX544743; SV 1; linear; genomic RNA; STD; VRL; 6838 BP. XX AC JX544743; XX DT 02-OCT-2012 (Rel. 114, Created) DT 24-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Murine astrovirus strain STL 1, complete genome. XX KW . XX OS Murine astrovirus OC Viruses; Riboviria; Astroviridae; unclassified Astroviridae. XX RN [1] RP 1-6838 RX PUBMED; 22951832. RA Yokoyama C.C., Loh J., Zhao G., Stappenbeck T.S., Wang D., Huang H.V., RA Virgin H.W., Thackray L.B.; RT "Adaptive immunity restricts replication of novel murine astroviruses"; RL J. Virol. 86(22):12262-12270(2012). XX RN [2] RP 1-6838 RA Yokoyama C.C., Loh J., Zhao G., Stappenbeck T.S., Wang D., Huang H.V., RA Virgin H.W., Thackray L.B.; RT ; RL Submitted (28-AUG-2012) to the INSDC. RL Pathology & Immunology, Washington University School of Medicine, Box 8118, RL 660 S. Euclid Ave., St. Louis, MO 63110, USA XX DR MD5; 8531a06c5ba3e13887eff22a0e9d6080. DR EuropePMC; PMC3486451; 22951832. DR EuropePMC; PMC4155196; 24784439. DR EuropePMC; PMC5663422; 29088279. XX FH Key Location/Qualifiers FH FT source 1..6838 FT /organism="Murine astrovirus" FT /strain="STL 1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jan-2011" FT /db_xref="taxon:1141625" FT CDS 47..2830 FT /codon_start=1 FT /product="nonstructural protein" FT /note="ORF1a" FT /db_xref="GOA:K0BZ46" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:K0BZ46" FT /protein_id="AFT63038.1" FT /translation="MALRKEYTSLVDQAVDAGNYLARCQLPTTAILLLRNMPDHYPNRP FT WSVHSTPRHLVYPSTTDDPKTRVITASSVTVEDEWVTYVWTGARWQQVATAPDCGKTIL FT VCALLNEHKRLKDENASLKLAKANLEVDNTTLRVASAAITNSAPRRSRLPWILALLAVL FT FSLLTTSAAFETSSTSRSYAPEDIARHSEDLNTFIENALRVNHTRSYTEYTYQLYATHA FT QTFLDRMALTFNTWQAYDPHFFAKTPLQSALLSVLQYVTPWTWEIALTGLVLALMLAEN FT SSPWSLLYLACATLTRTRFALLAVAPFQTRYTTAVTVAASVLYALDPLVAVACLVLHLF FT LLAVVGLFMEDTSYVQNLKGAFLLLCAFFGHALCALFGVSSAPVTTLAVAWRIWRLLSR FT AGTTGTVEVRNEEGKVVSKQTTQPNFLFRFKQALRRMRQLRTTQTPLARVNPDALCHIS FT VAGAKGTGFFCGNYAVTCAHVVGSETVVNLCYKGRNYQAPVKKILEQKDVALIPIPAGI FT TPPRLKISKKHCCDWVCVCAPDGDGAYLTAVTEGCEHDGHYSYACPTRDGMSGAPLLDI FT DGHVLGIHTNNTGYTGGAQRLDLEDIVEAPKPNPKQLALEREIEELKKQLAALQPEPPR FT PEPVAAPPSPVQPGPLVVPTTCPPPAPPAPTVAPAPVAPSPVAHYVVKPTQIPPMQQSL FT TTSDVVDLVRAAMGREMQILRDELNLMNQAKGKTKRGRGKKHTIGARVGGRRRQRGPAF FT TEEEYKEMLDQGIDPDEIKRLAEDLWEDQTGFPEWSDPEFSDEDDGWTPKTHDWLDFDY FT EDDLEQTYVPGPWAQKCKIPLVDYVKKIFDKGSVDEMLQNLAPLEKKLCRKQLEAVRQA FT KTDIELSVALGALDRRAADVGMQPFTPGLEYKQAVPKNAKGPRKGAKDQGSKTGKN" FT CDS <2773..4278 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF1b" FT /db_xref="GOA:K0BXJ9" FT /db_xref="InterPro:IPR001205" FT /db_xref="UniProtKB/TrEMBL:K0BXJ9" FT /protein_id="AFT63037.1" FT /translation="RQGPPQGGKRSGLEDWKELRQPPFRLLVPQPYPVVCSLPLDRPIY FT DNDEPKDPLLGVLPHVDYEGNFAPTTWGGAAYAKSFEKFTYAQPVDFEKHYPVETQFAD FT WAWRVHHAYLEGTRVCHIMSTEKNTDSTPAYPKCLDYSTEADYLEEHGWEPYVNAFRAI FT DSGERPQVLWFLFLKKEILKQEKIRDSDIRQIVCSDPIYARIGACFEQHQNHLMKQKTE FT THSGQCGWCPLKGGFEAMCHRLASKQGVFVEFDWTRFDGTIPVQLFRRIKKLRWSMICP FT EHQQRYGHMYQWYVNNLLHRYTVLPSGEVTIQTRGNPSGQISTTMDNNMVNYWLQAFEF FT CYFFGPDKDLWRQYDTVCYGDDRLTRYPVLPPHYIERVVAMYKDIFGMWVKPEKVRVSD FT TLVGLTFCGFRIGEHYLPYPAQEDKLFAGLVRPVRKLADFKTLHGKLLSLQLLMHFHPP FT SPFKDYLEMCLANTAKYCPELPARFSERQMDKLWRGGPKAVHG" FT CDS 4271..6727 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF2" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K0C109" FT /protein_id="AFT63039.1" FT /translation="MAKAKQQQKNATTVTTTTVTGRSSRRSRRRSVRRRAAGPSNPPTK FT TTTVRTVFRRTARPRGDRRRSRNAQRQAPREVVQTVTATLGTVGANQGNQVELEMAALL FT NPALIKETTGSNAFGPLQMYASTHAMWKVDRLTLKLTPLVGASAVSGTAVRASLNMTSG FT PAAPAWSALGARKHVDTNPGRPASFTLTAADVPGPKQGWFFTNTKQEAGFTVGGAIEIH FT TLGKTMSTYQNSAYTGPLFLAEVTGTWRFKNYEPQPGLLNLLKTEVKEPAGTVKVHSKP FT GEPVTLSIPQAGTFAGLERLNPTASATPGEIIWEVVDSAANAVSGLLPQPWQWLFKGGW FT FFLKRIANRKPVGAASVAGEPDGGEVTFRVYASIADAQNDVPCIASSAASTQSIQTEGL FT KISQVTPGTIGMPETAVATHNMAPPPESGPYTYQGPTLEAAAPLHAPKYTQWTIVDAGT FT SQEQARLRSGVVPAEQTSAWSSCTLELPGTFLQNMYEIDPRDIAAGTFPINHWNVSTSR FT LTRLGTAYGCNQARVRTYGEGVPHVVISTTSVLWMADVSTGWNYDNFSAAIWNPIVVAG FT PNVHGTEQGIPLTRGTLNWPGGDRNRWPYRNQIEKGHWYVTFWTQYDPDEWVWLDEFHL FT QFTLQPGTHTPTENHYWDVTADSLGTGLWGLRDLVFYPIGTQPRIVIPNTGPTSSHVTF FT DLPPGEGEDYSTDEEGESDEGAEDDEGNPLEFDHPLDGDLSQPPAAVLKDLTYKGRNLA FT NELWSTGVPDAKAWLAGQTIDPSPSFRRWRETFQKALQRGVAPLEAHELATSEFLAQRE FT SRGHAE" XX SQ Sequence 6838 BP; 1542 A; 2021 C; 1802 G; 1473 T; 0 other; ccaagaaaga ggcactagtg gcactcctgc tgctagtaag tctgacatgg ccctgcgtaa 60 ggagtatact tcccttgtgg accaagcggt cgacgctggg aattacctgg cccgctgcca 120 gttgccaact acggcaattc tgctgctgcg caatatgcct gaccactatc ctaaccggcc 180 ttggtctgtc cattcgaccc cccgccattt ggtctatccc tcaacaacgg atgatccaaa 240 gacgcgggtt ataacagcct cctccgtcac agtggaggat gaatgggtga cctatgtctg 300 gaccggcgcg cgctggcagc aggtggcaac ggcccctgac tgtggaaaaa cgatcctggt 360 ctgtgccctc ctgaacgaac ataagcggct caaggatgag aatgcaagcc ttaaacttgc 420 caaggcgaat ttggaggttg ataacaccac actgcgggtg gcgtcagcgg ccattaccaa 480 ctcggcccct cgccgttcgc gcctcccttg gatcctggca ctcttggctg tgcttttctc 540 cctcctcacg acctcggctg cctttgaaac cagctctacc tcacggagct atgcccctga 600 ggatattgct aggcactctg aggatttgaa cacctttatt gagaacgctt tgagggtgaa 660 ccacacacgc tcctacacag agtacaccta ccaactgtac gccacacatg ctcagacttt 720 cttggaccgc atggccttga catttaacac ctggcaagct tatgatccgc acttctttgc 780 gaaaacaccc ttgcaaagtg cgcttctgag tgtcctccag tatgtaacac cctggacgtg 840 ggagatagcc cttacgggct tggtattggc gctcatgcta gcggaaaact ctagcccttg 900 gtcgctgctc tacctggcct gtgctactct cacaaggacc cgctttgccc tcttggccgt 960 ggcgcccttc cagacacgct acacgacggc tgtcaccgtt gccgcctcgg tgctctacgc 1020 actcgacccc ttggtcgcag tggcgtgcct ggtgctacac ctctttctcc tggcagtggt 1080 ggggctcttc atggaggata cctcctatgt ccaaaacttg aagggcgcct tcctgctgct 1140 atgcgccttc ttcggccatg ccctctgtgc cctcttcgga gtgagctcgg cgccagtcac 1200 aacactagct gttgcctggc ggatctggcg gctactctct cgtgccggaa caacaggcac 1260 cgtggaggtg cgcaatgaag aaggcaaggt ggtctcaaaa cagaccacgc aacccaactt 1320 cctcttccgc ttcaagcagg cgttgaggag gatgagacaa ctcagaacga cccagacccc 1380 cctagcgcgc gtcaatcctg atgcgctctg ccacatcagc gtggccgggg cgaaaggcac 1440 tggcttcttt tgtggtaact acgctgtgac atgtgcacac gtagtcggga gtgagacagt 1500 cgtcaacctg tgctataaag gccgtaacta tcaggcccca gtgaagaaaa tcctggagca 1560 aaaggatgtg gcactcattc ccatacctgc ggggataaca ccaccccgct tgaagatctc 1620 caagaagcac tgctgcgact gggtctgtgt ctgtgccccc gacggtgatg gtgcctacct 1680 aactgctgtg actgagggtt gcgagcatga tggtcactac tcctatgcct gcccgacgcg 1740 ggatgggatg tctggcgctc ctctgttaga catagatggc catgttcttg ggatacacac 1800 taacaacact ggctacactg gtggtgccca acgcctcgac cttgaggaca tagttgaagc 1860 ccccaagcca aatcccaagc agctcgccct cgagagggag attgaagaac tgaaaaagca 1920 gcttgcggcc ctgcagcctg aaccacctag gcctgagccc gtggctgccc ctccctcacc 1980 cgttcagccc ggccccctag tggttccaac tacctgcccc cctccagccc caccggcacc 2040 aactgtggcc cctgctcctg tggcccccag ccctgtggcg cactatgtgg tcaaacccac 2100 ccaaattcca cctatgcaac aaagcctaac aactagtgat gtggtggatc ttgtgcgtgc 2160 ggcaatgggt cgtgagatgc aaatcctgcg ggacgagctg aacctgatga atcaggctaa 2220 agggaagacc aaacgtggcc gtgggaagaa gcataccatc ggggctcgtg ttggtggccg 2280 tcgcagacag cgtgggcctg ccttcaccga ggaggagtac aaggagatgc tggaccaagg 2340 gattgacccc gatgagatca agcgcctagc cgaagacctc tgggaggacc agactggctt 2400 cccggagtgg agtgaccctg agttctctga tgaggacgat ggttggacac caaagaccca 2460 tgactggcta gactttgatt atgaggatga tttggaacaa acttacgtcc ctggtccctg 2520 ggcccagaaa tgcaagatac ctctcgtcga ctacgtcaag aagatctttg acaaaggctc 2580 cgttgatgag atgttacaaa atcttgcccc tctggagaag aagctctgta ggaaacaact 2640 tgaggccgtt cgccaggcaa aaactgatat cgagctctct gttgcacttg gcgctttgga 2700 tcgtcgtgct gccgatgtgg gcatgcagcc ctttacacca gggctagagt ataaacaagc 2760 tgttccaaaa aacgccaagg gcccccgcaa gggggcaaaa gatcagggct cgaagactgg 2820 aaagaactaa ggcagccccc ctttcgcctc ctggtacccc agccttaccc tgttgtctgc 2880 agcttacccc tggaccggcc catctatgac aacgatgagc ctaaagatcc acttctgggg 2940 gtgttgccac atgtagacta tgagggtaac tttgcaccaa caacctgggg aggcgcagct 3000 tacgcgaaga gtttcgagaa gttcacgtat gctcaacctg tggacttcga aaagcactat 3060 cctgtagaaa ctcagttcgc tgactgggcc tggcgagtcc accacgctta cctggaaggc 3120 actcgggtat gccacatcat gtctacagag aaaaataccg actcaacccc tgcctacccc 3180 aaatgcctgg actactccac cgaggccgac tacctagagg aacatggctg ggagccctat 3240 gtcaacgctt tccgtgccat tgactccggg gagcggcccc aggttctctg gttcctcttc 3300 ttgaagaagg agattctcaa acaagagaag attcgcgatt cagacattcg tcagattgtc 3360 tgttcagatc ccatctatgc gcggatcgga gcttgcttcg aacaacatca aaaccatctc 3420 atgaagcaaa aaacagagac ccattccggg caatgtggct ggtgccccct gaaggggggc 3480 tttgaggcaa tgtgccaccg tcttgcctct aagcagggtg tctttgtgga atttgactgg 3540 acacgctttg atggaacaat ccccgtacaa ctcttccgca ggataaagaa gctccgctgg 3600 tccatgattt gtcccgaaca tcagcagcgc tacgggcaca tgtaccagtg gtatgttaac 3660 aatctcttgc accgctacac cgtgctgccc tcaggtgagg tgaccatcca aactcgtggc 3720 aacccctcag ggcaaatctc aacaacaatg gataacaaca tggttaacta ctggcttcag 3780 gcatttgagt tctgctactt ctttggccct gataaagatc tctggcggca gtatgatact 3840 gtctgctatg gtgatgaccg gcttacgcgc taccctgtgc taccacccca ttacatcgag 3900 cgggtggtcg ccatgtacaa ggacatcttt ggcatgtggg ttaaacctga aaaggtgcgc 3960 gttagtgaca ccctggttgg tctcaccttt tgtggcttta gaatagggga gcactatttg 4020 ccctatcctg cacaggaaga caaactcttt gccggcctcg tccggccagt gaggaaattg 4080 gctgacttta aaacactcca tgggaaactc ttgagcctgc agcttctgat gcacttccac 4140 cctccgagtc cctttaagga ctacttggag atgtgcttgg caaacaccgc caagtactgc 4200 ccggaacttc cggcgcggtt ttcagagcgt cagatggaca agctttggag gggaggacca 4260 aaagctgttc atggctaagg ccaaacaaca acagaaaaat gccacgaccg tcactactac 4320 aactgtcact ggtcgcagta gtcggcggtc tcgcaggcgc tctgtacggc gccgcgctgc 4380 aggcccttct aaccccccaa caaagacaac aactgttcgg actgtttttc gccgcactgc 4440 ccggcctcgc ggtgatcgcc gcaggagtag gaatgctcag cggcaggctc ctcgcgaggt 4500 tgttcagacg gttacggcga ccctcggaac ggttggcgcg aaccagggca atcaggtcga 4560 gcttgagatg gcagcgctcc tcaacccagc gctaattaaa gaaacaactg gctcaaacgc 4620 cttcggacca ctccagatgt atgcctccac gcatgccatg tggaaagtgg ataggctcac 4680 actcaagctc acccctctgg tcggcgcctc tgctgtttcc ggtacagcgg tccgtgcctc 4740 actgaatatg acatctgggc ccgccgcgcc cgcctggtca gccttgggcg cgcggaagca 4800 tgtggacacc aatcctggtc ggccggcttc cttcaccctc acagccgccg atgtacctgg 4860 ccccaagcag ggttggttct ttactaatac taagcaggag gccggcttta cagtcggcgg 4920 ggccattgag atccataccc tcggcaagac gatgtcaacc taccagaact cagcctatac 4980 gggcccactc tttcttgccg aggtcacagg tacctggagg tttaagaact acgagcccca 5040 gcccggcttg ctcaacctcc tcaagaccga ggttaaagag cctgcgggca ctgtgaaggt 5100 acactccaaa cctggagaac ctgtcacgct ctccatccct caagcaggga cctttgctgg 5160 cctagagagg ctaaatccaa cagcctcggc cacaccaggt gagatcatct gggaggtagt 5220 ggattccgct gcgaatgcgg tctccggctt gcttcctcaa ccctggcagt ggctttttaa 5280 aggcggctgg ttcttcctga aaagaattgc caaccggaaa cctgttggtg ccgccagtgt 5340 ggcgggtgaa cctgatggag gtgaagtgac tttccgcgtg tacgccagta tcgcggatgc 5400 ccagaatgat gtgccctgta ttgccagctc ggcggcctcc actcaatcca tacagacgga 5460 gggtctcaag atctcccagg tgactcctgg gaccattggt atgcctgaaa ctgcagtagc 5520 cacacacaac atggctccac cacccgagtc cggaccctat acctatcaag ggcccacctt 5580 ggaggctgct gctcctttgc acgcccccaa gtatacacag tggactattg tagatgctgg 5640 tacctcccag gagcaggccc gcctgcgctc cggggtggtc ccagcagagc agacctcagc 5700 ctggtcgagc tgtactctgg agctcccagg caccttcctc cagaatatgt atgagattga 5760 tccccgtgat attgcagccg gtacctttcc catcaatcac tggaacgtga gcacctcgcg 5820 gctcacgcgg cttggcaccg cctacggttg caatcaggcg cgggtccgca cctatgggga 5880 gggagtcccg catgtggtta tctctaccac ttctgtcctc tggatggccg acgtttccac 5940 agggtggaac tatgacaact tctccgctgc catctggaat cccatagtgg tagctgggcc 6000 aaacgtccat gggactgaac agggcattcc tctcacccgg ggaaccctca actggcccgg 6060 gggcgatagg aatcgctggc cctaccgcaa ccagattgag aagggtcact ggtatgtgac 6120 cttctggact cagtacgatc ctgatgagtg ggtctggttg gatgagttcc atctccagtt 6180 caccttgcaa ccgggcacgc acacccccac tgaaaaccat tactgggatg taacagcaga 6240 cagcttaggt actggcctct ggggcctccg ggaccttgtg ttctacccaa taggtaccca 6300 gcccaggata gtgataccaa acactgggcc taccagctcc catgtgacct tcgacctccc 6360 cccgggtgag ggcgaagatt actctacaga tgaggaaggc gagtccgatg agggagctga 6420 ggatgatgaa ggaaatcccc ttgaatttga ccacccatta gacggcgatc tctcgcaacc 6480 ccccgccgcc gtcctgaaag atctgaccta caaggggcgt aatctcgcca atgaattgtg 6540 gagtacgggg gtgccagatg cgaaggcctg gctggcggga cagaccatcg acccgtcgcc 6600 atcctttcgc cgctggcgag agacttttca aaaagcgctc cagcgtggtg tagcacccct 6660 ggaagcgcat gagctcgcta ctagcgagtt ccttgctcaa agagaaagcc gcggccacgc 6720 cgagtaggat cgagggtaca gctttctccc ctgcttttct gcttctttct gtgctttggt 6780 gttactttag ggtgatataa ttggcataaa aattggcaaa aaaaaaaaaa aaaaaaaa 6838 //