ID JX534224; SV 2; linear; genomic RNA; STD; VRL; 6356 BP. XX AC JX534224; XX DT 28-OCT-2012 (Rel. 114, Created) DT 23-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Tobacco mild green mosaic virus isolate Xiamen, complete genome. XX KW . XX OS Tobacco mild green mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6356 RA Chen H., Chen Q., Liao F., Xie Y., Lin S.; RT ; RL Submitted (23-AUG-2012) to the INSDC. RL Plant Quarantine Lab, Xiamen Entry-Exit Inspection and Quarantine Bureau, RL No. 2165, Jiangang Road, Haicang District, Xiamen, Fujian 361026, China XX RN [2] RC Sequence update by submitter RP 1-6356 RA Chen H., Chen Q., Liao F., Xie Y., Lin S.; RT ; RL Submitted (22-JAN-2013) to the INSDC. RL Plant Quarantine Lab, Xiamen Entry-Exit Inspection and Quarantine Bureau, RL No. 2165, Jiangang Road, Haicang District, Xiamen, Fujian 361026, China XX DR MD5; 27db4d518a17fb139216f4d76cd886a6. DR EuropePMC; PMC5282660; 28137291. XX CC On Jan 22, 2013 this sequence version replaced gi:409892919. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6356 FT /organism="Tobacco mild green mosaic virus" FT /host="Capsicum annuum" FT /isolate="Xiamen" FT /mol_type="genomic RNA" FT /country="China:Fujian province, Xiamen city, Xiang'an FT district" FT /collection_date="Dec-2011" FT /db_xref="taxon:12241" FT CDS 72..4901 FT /codon_start=1 FT /transl_except=(pos:3405..3407,aa:OTHER) FT /product="183 kDa protein" FT /note="p183; readthrough protein" FT /db_xref="GOA:L7WKK6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:L7WKK6" FT /protein_id="AGC82908.1" FT /translation="MAHIQSTISNALLESVSGKNTLVNDLARRRMYDTTVDEFNARDRR FT PKVNFSKTISEEQTLLVSNAYPEFQITFYNTQNAVHSLAGGLRALELEYLMLQVPYGSP FT TYDIGGNFAAHLFKGRDYVHCCMPNLDIRDIMRHEGQKDSIEMYLSRLSRSNKVIPEFQ FT REAFNRYAEAPNEVCCSKTFQDCRIHPPENSGRRYAVALHSLYDIPVHEFGAALISKNI FT HVCYAAFHFAEALLLDQTEVTLNEIGATFKREGDDVSFFFADESTLNYSHKYKNILHYV FT VKSYFPASSRIVYFKEFLVTRVNTWFCKFTKVDTYILYKSVRQVGCDSDQFYEAMEDAF FT AYKKTLAMFNTERAIFRDTASVNFWFPKMKDMVIVPLFEGSITSKRMTRSEVIVNRDFV FT YTVLNHIRTYQAKALTYQNVLSFVESIRSRVIINGVTARSEWDVDKAILQPLSMAFFLQ FT TKLAALQDDIVMGKFRCLDKTTSELIWDEVGKFFGNVFPTIKERLVSRKILDVSENALK FT IKIPDLYVTWKDRFVAEYTKSEELPHLDIKKDLEEAEQMYDALSELSILKGADNFDIAK FT FKDMCKALDVSPDVAARVIVAVAENRSGLTLTFDKPTEENVVKALKSTASEAVVCLEPT FT SEEVNVNKFSIAEKGRLPVCAEGHGLTSANLEHQELESLNDFHKACVDSVITKQMASVV FT YTGSLKVQQMKNYVDSLAASLPATVSNLCKSLKDVVGYDSDSREKVGVWDVTLKKWLLK FT PAAKGHSWGVVLDYKGKMFTALLSYEGDRMVTESDWRRVAVSSDTMVYSDIAKLQNLRK FT TMRDGEPHEPTAKMVLVDGVPGCGKTKEILERVDLDEDLILVPGKQAAAMIRRRANSSG FT LIRATMDNVRTVDSFLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQ FT QIPFINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSKYEGAVSTTSTVQRS FT VSSEMIGGKGVLNSVSKPLKGKIVTFTQADKFELEEKGYKNVNTVHEIQGETFEDVSLV FT RLTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQIISDLSSLSSFLLEMYMVE FT AGSKXQLQMDAVFKGHNLFVATPKSGDFPDLQFYYDVCLPGNSTILNKYDAVTMRLRDN FT SLNVKDCVLDFSKSIPMPKEVKPCLEPVLRTAAEPPRAAGLLENLVAMIKRNFNAPDLT FT GTIDIESTASVVVDKFFDSYFIKKEKYTKNIAGVMTKDSMMRWLGKQERSTIGQLANYN FT FVDLPAIDQYKHMIKAQPKQKLDLSIQNEYPALQTIVYHSKQINGIFGPVFSELTRLLL FT EAVDSQKFLFFTRKTPEQIQEFFSDLDSHVPMDVLELDISKYDKSQNEFHCAVEYEIWK FT RLGLNEFLAEVWKQGHRKTTLKDYIAGIKTCLWYQRKSGDVTTFIGNTVIIAACLGSML FT PMEKVIKGAFCGDDSVLYFPKGLDFPDIQSCANLMWNFEAKLYRKRYGYFCGRYIIHHD FT KGAIVYYDPLKLISKLGAKHIKDYDHLEELRVSLCDVACSLGNCAYFPQLNAAIKEVHK FT TAIDGSFAFNCVNKFLCDKFLFRTLFLNGC" FT CDS 72..3407 FT /codon_start=1 FT /product="126 kDa protein" FT /note="p126" FT /db_xref="GOA:L7WPW5" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:L7WPW5" FT /protein_id="AGC82909.1" FT /translation="MAHIQSTISNALLESVSGKNTLVNDLARRRMYDTTVDEFNARDRR FT PKVNFSKTISEEQTLLVSNAYPEFQITFYNTQNAVHSLAGGLRALELEYLMLQVPYGSP FT TYDIGGNFAAHLFKGRDYVHCCMPNLDIRDIMRHEGQKDSIEMYLSRLSRSNKVIPEFQ FT REAFNRYAEAPNEVCCSKTFQDCRIHPPENSGRRYAVALHSLYDIPVHEFGAALISKNI FT HVCYAAFHFAEALLLDQTEVTLNEIGATFKREGDDVSFFFADESTLNYSHKYKNILHYV FT VKSYFPASSRIVYFKEFLVTRVNTWFCKFTKVDTYILYKSVRQVGCDSDQFYEAMEDAF FT AYKKTLAMFNTERAIFRDTASVNFWFPKMKDMVIVPLFEGSITSKRMTRSEVIVNRDFV FT YTVLNHIRTYQAKALTYQNVLSFVESIRSRVIINGVTARSEWDVDKAILQPLSMAFFLQ FT TKLAALQDDIVMGKFRCLDKTTSELIWDEVGKFFGNVFPTIKERLVSRKILDVSENALK FT IKIPDLYVTWKDRFVAEYTKSEELPHLDIKKDLEEAEQMYDALSELSILKGADNFDIAK FT FKDMCKALDVSPDVAARVIVAVAENRSGLTLTFDKPTEENVVKALKSTASEAVVCLEPT FT SEEVNVNKFSIAEKGRLPVCAEGHGLTSANLEHQELESLNDFHKACVDSVITKQMASVV FT YTGSLKVQQMKNYVDSLAASLPATVSNLCKSLKDVVGYDSDSREKVGVWDVTLKKWLLK FT PAAKGHSWGVVLDYKGKMFTALLSYEGDRMVTESDWRRVAVSSDTMVYSDIAKLQNLRK FT TMRDGEPHEPTAKMVLVDGVPGCGKTKEILERVDLDEDLILVPGKQAAAMIRRRANSSG FT LIRATMDNVRTVDSFLMHPKPRSHKRLFIDEGLMLHTGCVNFLVLISGCDIAYIYGDTQ FT QIPFINRVQNFPYPKHFEKLQVDEVEMRRTTLRCPGDVNFFLQSKYEGAVSTTSTVQRS FT VSSEMIGGKGVLNSVSKPLKGKIVTFTQADKFELEEKGYKNVNTVHEIQGETFEDVSLV FT RLTATPLTLISKSSPHVLVALTRHTKSFKYYTVVLDPLVQIISDLSSLSSFLLEMYMVE FT AGSK" FT CDS 4891..5661 FT /codon_start=1 FT /product="28 kDa protein" FT /note="movement protein" FT /db_xref="GOA:A4LAL8" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:A4LAL8" FT /protein_id="AGC82910.1" FT /translation="MAVSLRDTVKISEFIDLSKQDEILPAFMTKVKSVRISTVDKIMAV FT KNDSLSDVDLLKGVKLVKNGYVCLAGLVVSGEWNLPDNCRGGVSVCIVDKRMKRSKEAT FT LGAYHAPACKKNFSFKLIPNYSITSEDAEKHPWQVLVNIKGVAMEEGYCPLSLEFVSIC FT VVHKNNVRKGLRERILSVTDGSPIELTEKVVEEFVDEVPMAVKLERFRKTKKKVVGNNV FT NNKKINNSGKKGFKIEEIEDNVSDDESIASSSTF" FT CDS 5667..6146 FT /codon_start=1 FT /product="coat protein" FT /note="17kDa protein" FT /db_xref="GOA:D3UT61" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:D3UT61" FT /protein_id="AFV46123.1" FT /translation="MPYTINSPSQFVYLSSAYADPVQLINLCTNALGNQFQTQQARTTV FT QQQFADAWKPVPSMTVRFPASDFYVYRYNSTLDPLITALLNSFDTRNRIIEVDNQPAPN FT TTEIVNATQRVDDATVAIRASINNLANELVRGTGMFNQAGFETASGLVWTTTPAT" XX SQ Sequence 6356 BP; 1922 A; 1115 C; 1498 G; 1821 T; 0 other; gtatgtttta atagttttcg acaacaacaa ttaaaacaaa aacaacaaat tacaaacaac 60 aaacaacaac aatggcacac atacaatcta caattagcaa cgcccttctt gaaagcgtga 120 gtggtaaaaa cactctcgtt aatgaccttg caagaaggcg tatgtacgat acgaccgtgg 180 acgaatttaa cgcccgcgac cgtagaccaa aggtcaactt ttccaaaact attagcgaag 240 agcaaacgct tctagtctcc aacgcgtacc cggagttcca gattaccttt tataatactc 300 aaaatgccgt acacagtttg gctggaggtt tgagagcatt agaattggaa tatctgatgc 360 tacaagttcc ctatggatca ccgacatacg atataggtgg gaactttgca gcacatttgt 420 tcaaaggcag ggattacgtg cattgctgta tgcccaatct ggacatacga gatataatga 480 ggcacgaagg acaaaaggac tcaattgaga tgtatttgtc cagattgtct cgttccaaca 540 aggtaattcc tgagtttcaa agggaggctt ttaataggta cgcagaagct ccgaacgaag 600 tctgctgctc taaaactttt caggattgtc gaatacatcc gccagagaat agtggtagaa 660 gatacgctgt tgctcttcac agtttgtatg atattcctgt gcatgagttt ggagctgcgt 720 taatatctaa gaatatacat gtatgttatg cagctttcca ttttgcagaa gcattattac 780 tagaccagac ggaggttacg cttaatgaaa taggcgcaac tttcaaaaga gaaggtgatg 840 atgtttcttt tttctttgct gatgaaagta ctttaaatta tagtcataaa tacaaaaata 900 tcttgcatta tgtagttaaa tcttactttc ctgcttctag tagaatagtt tactttaagg 960 aatttttagt cactagggtt aatacttggt tttgtaaatt tactaaagta gatacctata 1020 ttctgtacaa gagtgttaga caagtagggt gtgatagtga tcagttctat gaggcgatgg 1080 aagacgcctt tgcttacaag aaaaccttgg ccatgttcaa cactgaaaga gcaatcttta 1140 gagacacggc ttcggttaac ttttggttcc ccaagatgaa ggacatggtg atagtaccgc 1200 tgtttgaggg ttctattacc agcaaaagga tgacaaggag tgaggtcatt gttaatcgtg 1260 acttcgttta cacagtgctt aatcatatca gaacatatca agccaaagcg ttaacttacc 1320 agaacgtatt atctttcgtg gagtctataa gatcccgcgt gataatcaat ggtgttaccg 1380 ctaggtctga atgggatgta gataaagcaa ttcttcaacc cttgtcaatg gctttcttct 1440 tgcagactaa gctggctgcg cttcaagatg atatagtaat gggaaagttt cggtgcttgg 1500 ataagaccac ttctgaactt atttgggatg aggtgggcaa attttttgga aacgttttcc 1560 ccactatcaa ggagagattg gtgagcagga aaattctgga tgtaagtgag aatgctctga 1620 agatcaagat cccagatctg tatgtcacat ggaaagacag gttcgtagct gaatacacca 1680 agtctgagga gttaccgcat ctagatatca agaaggactt agaagaagct gagcaaatgt 1740 acgacgcgtt gtcagaatta tctatcctta agggtgctga taatttcgat atcgcgaagt 1800 tcaaagacat gtgcaaggct ttagatgtta gtcctgatgt ggcagcgcga gtaatcgttg 1860 cagtggccga gaatagaagc ggtttgactc ttacttttga taagccaacc gaggagaatg 1920 tggttaaagc tcttaaaagc acggcgtctg aggccgtggt atgtcttgaa ccgacatccg 1980 aagaggtgaa cgtaaataaa ttttctattg ctgagaaagg gagattgcct gtgtgtgcag 2040 aaggtcatgg tttgacgagt gctaacttag agcaccagga gttggagtcc ctcaacgatt 2100 tccataaagc ttgcgtggat agtgtgatta caaagcaaat ggcatcggtt gtctacactg 2160 gctcactcaa agttcaacaa atgaagaact atgtggacag tttggcagct tcgttgcccg 2220 ccactgtatc aaatctatgc aagtcactaa aggatgttgt cgggtatgat tctgattcca 2280 gggagaaagt tggtgtttgg gatgtcactt tgaaaaagtg gctcctcaaa cctgcggcca 2340 aaggtcattc atggggagtt gtcctggatt acaagggaaa aatgtttact gcacttctat 2400 cttatgaagg agatagaatg gtgactgaaa gcgactggag gagggtggct gtatcatctg 2460 atacaatggt atattctgat attgcaaagc tccaaaatct gaggaaaaca atgagagacg 2520 gtgaacccca cgaacctact gcaaagatgg tactcgtgga tggggtgcct ggttgtggaa 2580 agacaaagga gattttggaa agagttgatc ttgatgagga tttgatcttg gttcctggaa 2640 aacaagctgc tgctatgatc agaagaaggg ctaattcatc tggactgata agagccacaa 2700 tggacaatgt gagaacggta gattcatttc taatgcatcc aaaaccgcga tcacacaaga 2760 ggctttttat tgatgaaggg ttgatgctgc acaccggttg tgttaacttc ctggtgctta 2820 tctctggttg cgacatcgca tacatttacg gagatacaca gcagattcct ttcattaaca 2880 gagttcagaa tttcccgtat cccaaacatt ttgagaagct gcaagtggat gaagttgaga 2940 tgaggaggac cacactgaga tgcccaggtg atgtgaattt tttcctacaa tcgaagtacg 3000 aaggagcggt gtcaaccact tcaactgtgc aacgatcggt ctcatctgag atgataggcg 3060 gtaagggagt actaaacagt gtttccaaac cactaaaagg gaaaattgta actttcactc 3120 aggctgataa atttgagtta gaggagaagg gctataagaa cgtgaacacc gttcatgaga 3180 tccagggaga aacctttgaa gatgtgtcgc tggtcagatt gacggcaact ccactgactc 3240 tgatttccaa gtcttccccg catgttctag tcgctctgac tagacacaca aagagcttca 3300 aatattacac cgtagtgtta gatcctttag tacagataat tagtgatttg tcttctttaa 3360 gctccttcct tttagaaatg tatatggtag aagcaggtag taaatagcaa ttacagatgg 3420 atgcagtgtt caaaggtcat aatctctttg tggcaacacc taaatcagga gactttccag 3480 atctgcagtt ctattacgat gtatgcctcc ctggtaatag tactatactt aacaagtatg 3540 atgctgttac catgaggtta cgtgataata gtcttaatgt gaaggattgt gttcttgatt 3600 tttccaaaag tattccgatg ccaaaggagg tgaaaccatg tctagagcca gttttgcgta 3660 ccgcggcgga accgccaagg gctgcaggac tactcgaaaa tctggttgca atgattaaaa 3720 gaaatttcaa cgcaccagac ctgacgggga cgattgacat tgagagcact gcatctgttg 3780 tagtagataa gttttttgat agctatttta ttaaaaaaga aaaatacaca aaaaatattg 3840 ccggagtaat gacgaaggat tcaatgatga gatggttggg aaaacaggaa agaagtacta 3900 ttggacagtt ggctaactac aattttgtag atctgccggc catcgatcag tacaagcaca 3960 tgatcaaggc tcaaccaaaa cagaaattgg acctttcaat tcagaatgaa taccctgctc 4020 tgcaaacaat tgtctaccat tcgaagcaga tcaacggtat ttttggcccg gttttctcag 4080 agcttacaag gttgctgctc gaggcagttg attctcagaa gtttcttttc tttactagga 4140 aaactccaga acagattcaa gaatttttct cggatctcga ctcgcacgtt cccatggatg 4200 tgttggaact ggatatttct aagtatgata agtcacagaa cgagtttcat tgtgctgtag 4260 agtatgaaat atggaaaaga ttgggtctca acgagttttt ggccgaagtg tggaaacaag 4320 ggcacaggaa aacaactttg aaggattaca ttgctggaat caagacatgt ctgtggtatc 4380 aaaggaaaag cggtgatgtg actactttca tcggcaatac tgttataata gcagcttgct 4440 tgggttcaat gttaccgatg gaaaaggtca taaaaggtgc tttttgcgga gacgattccg 4500 ttttgtattt tccgaagggt ttggatttcc ctgacattca gtcatgcgct aatctcatgt 4560 ggaactttga ggccaaactg tatagaaaga ggtacggtta cttttgtggt agatacatca 4620 tacaccatga taagggagca atagtgtatt atgatccttt gaagttgatc tccaaacttg 4680 gggcaaaaca tatcaaggat tatgaccact tagaagagtt aagggtgtct ttgtgtgatg 4740 ttgcttgttc gctcggaaac tgtgcttact ttccgcagct gaacgcagct atcaaggagg 4800 ttcataaaac cgcgattgat ggttcgtttg cttttaattg tgttaacaaa tttttgtgtg 4860 ataaattttt atttagaact ttgtttttaa atggctgtta gtctcagaga tactgtcaaa 4920 attagcgagt tcattgatct ttcgaaacag gatgagatac ttccggcatt catgactaag 4980 gtcaagagtg ttagaatatc gactgtggac aagattatgg ctgttaagaa tgatagtctt 5040 tctgatgtag atttacttaa aggtgttaag ttagttaaga atgggtatgt gtgcttagct 5100 ggtttggtag tgtctgggga gtggaatctc ccggataact gtcgtggtgg tgtcagtgtt 5160 tgtattgtag ataagagaat gaaaaggagt aaggaagcaa cgctgggtgc gtatcacgcc 5220 cctgcttgca aaaagaattt ttcttttaag ctaatcccta attattcaat aacatccgag 5280 gatgctgaga agcacccgtg gcaagtgtta gtgaatatca aaggagtggc tatggaagaa 5340 ggatactgtc ctttatcttt ggagttcgtt tcaatttgtg tagtacataa aaataatgta 5400 aggaaaggtt tgagggaacg tattttgagt gtaacagacg gctcgccaat tgaactcact 5460 gaaaaggttg ttgaggagtt cgtggatgaa gtaccaatgg ctgtaaaact cgaaaggttc 5520 cggaaaacaa aaaagaaagt ggtaggtaat aatgttaata ataagaaaat aaataatagt 5580 ggtaagaagg gttttaaaat tgaggaaatt gaggataatg taagtgatga cgagtctatc 5640 gcgtcatcga gtacgtttta atcaatatgc cttatacaat caactctccg agccaatttg 5700 tttacttaag ttccgcttat gcagatcctg tgcagctgat caatctgtgt acaaatgcat 5760 tgggtaacca gtttcaaacg caacaagcta ggacaacagt ccaacagcaa tttgcggatg 5820 cctggaaacc tgtgcctagt atgacagtga gatttcctgc atcggatttc tatgtgtata 5880 gatataattc gacgcttgat ccgttgatca cggcgttatt aaatagcttt gatactagaa 5940 atagaataat agaggttgat aatcaacccg caccgaatac tactgaaatc gttaacgcga 6000 ctcagagggt agacgatgct actgtagcta taagggcttc aatcaataat ttggctaatg 6060 aactggttcg tggaactggc atgttcaatc aagcaggctt tgagactgct agtggacttg 6120 tctggaccac aactccggct acttagctat tgttgtgaga tttcctaaaa taaagtcgct 6180 gaagacttaa aattcagggt ggctgatacc aaaatcagca gtggttgttc gtccacttaa 6240 atataacgat tgtcatatct ggatccaaca gttaaaccat gtgatggtgt atactgtggt 6300 atggcgtaaa acatcggaga ggttcgaatc ctcccctaac cgcgggtagc ggccca 6356 //