ID JX524563; SV 1; linear; genomic RNA; STD; VRL; 5567 BP. XX AC JX524563; XX DT 27-JUN-2013 (Rel. 117, Created) DT 27-JUN-2013 (Rel. 117, Last updated, Version 1) XX DE Ustilaginoidea virens RNA virus 1 strain JYH-ZT, complete genome. XX KW . XX OS Ustilaginoidea virens RNA virus 1 OC Viruses; Riboviria; Totiviridae; Victorivirus; unclassified Victorivirus. XX RN [1] RP 1-5567 RX DOI; 10.1007/s00705-013-1615-9. RX PUBMED; 23385326. RA Zhang T., Jiang Y., Huang J., Dong W.; RT "Complete genome sequence of a putative novel victorivirus from RT Ustilaginoidea virens"; RL Arch. Virol. 158(6):1403-1406(2013). XX RN [2] RP 1-5567 RA Zhang T., Dong W., Jiang Y.; RT ; RL Submitted (26-AUG-2012) to the INSDC. RL Plant Pathology, College of Plant Science and Technology andthe Key Lab of RL Crop Disease Monitoring & Safety Control, Huazhong Agricultural University, RL Wuhan, Hubei 430070, China XX DR MD5; f5f100a7d869b4961564f9058e695008. DR EuropePMC; PMC3668124; 23385326. XX CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..5567 FT /organism="Ustilaginoidea virens RNA virus 1" FT /host="Ustilaginoidea virens" FT /strain="JYH-ZT" FT /mol_type="genomic RNA" FT /country="China:Hubei" FT /isolation_source="spikelets of rice" FT /collection_date="Oct-2010" FT /db_xref="taxon:1312445" FT CDS 395..2575 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:R9WWE7" FT /db_xref="InterPro:IPR008871" FT /db_xref="UniProtKB/TrEMBL:R9WWE7" FT /protein_id="AGO04406.1" FT /translation="MGETNTNAFLAGILANARGGHIADNNMFRRYASCVRTNAIIGGNE FT DARLTRIFYEVGRVHANSRLALAAHASTALRVDASYPTASLLAEEFVGLSKKYSNFAAT FT FAYSSLAGVVERIARGLAAASLFNDVDSDTLAANQPVRVSALGTYDGPVNSMVNTVFIP FT RLVNSSLTGDVFAVLVNAVAGEGGSVATDTLEVNAADRRPIIGTVDAVGFPRAAVDALR FT LLGANMIASNQGPLFALALVRGLHKTLTVVGHTDEGGVTRDLLRAQSFGVPFGGIHYGL FT DVYAGLPALATNSAADVASYVDALALASVYCGASNGEAETRSGTHIAGTDEMASHNRSQ FT LVADLAKFSDIYVPALARIFQCGGDPAIAASALTSAGHALSKHNRHLRMATVTPFFWIE FT PTSILPHDAFGTRAEAEGSGALASRDEPRTRPIFEDIWTADTGDLAFSSYHVQFRNARS FT AWFLAHWHGHELNGLGATQVRQLDPNAIIQPGGHQIEEVRDRVESALPLSAYLWQRGQS FT PFCAPGEFMNLAGTMGIMVNHYSFDGEGIPRLEHVPTAREFLGSTVTITVGRPQGINDS FT KANWADSQVRRARTRAARELAASAARVRAFGRPDVAAMPILTTAPPPRHTPAHSPAPAR FT DHDVGGGLDGWRRTSVGVNDSTAAYPYGEPLGVTAQHQPVRFPQLARTLAGGGTAATPH FT PPPQATGSDDVSADVPVAPAPSAAPQSGPTPE" FT CDS 2575..5058 FT /codon_start=1 FT /product="RNA directed RNA polymerase" FT /db_xref="GOA:R9WT03" FT /db_xref="InterPro:IPR001795" FT /db_xref="UniProtKB/TrEMBL:R9WT03" FT /protein_id="AGO04407.1" FT /translation="MELLDRAKDFGPLGDVLVQHINSCPDIISDFRDTFVGRLIKLTNS FT ANSSRSRSYLLPAAVSLLCLGFPLQEDMTFADFIRWVREAYSIEIVDSATFAESGLTHL FT PPGRFVRRICGSSEIRDRAFPKPQLLAGQTKTNVKLSALITSAVVMMGSERVAALLRSS FT WGMRSDRVMSKLVYAFVLSRRFGEIGHKLANFLSNSPEDAKYVSLALKALGLNSTDWGS FT VLCEANTLAGRGTGDIDLVTEAAQRCDSDYVESHVVHVDPDELRTHVRAVIERELKNTR FT PMSSLDDFWTSRWLWCVNGSQTTESSLALGIDPHYCRSTHKRAYRRSASEQVKNEPITG FT WDGHTSVSVSAKLEAGKTRAIFACDTRSYFAFSWVLSAAQRDWANSRVLLDPGVGGHIG FT MFQRISRAQRGGGVNLMLDYDDFNSQHSTTSMQVVFEVLCDKYNCPTWYKDVLVKSFDR FT MYVNCGNERRKVLGTLMSGHRGTTFINSVLNAAYIRMAVGGQKFDRMLSLHTGDDVYIR FT ANTLSDCVQILDSTKRLGCRMNPTKQSIGYKGAEFLRMGMRRDDCFGYFPRALASFISG FT NWANTDPLDPVEGLRCAIGGCRSLINRGMVPAVAELVAPSLRYRTGLGARTLCKMLAGE FT IAIEGAPVFGGSGFISTYRVETRVEDRIRVDKRWARYATGDYLAHHTTSIEAAALEMSG FT SAGTNLLIISSYVRGLNEERVQPKPAPSWKKLPRINLRGYACASDLVNKQRKRGVLSQY FT PLINLIKNRLDESMLRALISEELGYVPEGEPFKIAFGEDSHSKRILGVLSYADASSFCS FT RTESGSIYTLYRVAM" XX SQ Sequence 5567 BP; 1111 A; 1549 C; 1620 G; 1287 T; 0 other; cgggtccctg tggacggaag cctccgccat acggcatggt cactaatgct gacctgtgag 60 aagaggcacg ctgcccccgg ctaggggtct tatcagggct aataccacta tcattgatcc 120 ggggtggtgg ttccgtacga gtctgtttag gtatggcact ctagtgtctc cgttgacgac 180 gggctgttcg cagtatttac ctagtacact cggagtgttg tctacgctct aggcggtcct 240 ttcctggata ggattcggct tagctgaaag gagggttcgc tggttgccag gggagggttc 300 cgttgatcct ggcctaccag tgttctgacg tgctagtgct tatcaattgt gaacaaacca 360 aagtctaaat tctaaaacaa caacaacaac aacaatgggt gaaaccaaca ccaatgcgtt 420 tctcgctggc attcttgcca atgcccgcgg tggccacatc gcggacaaca atatgtttcg 480 gcgctatgcc tcttgcgtgc gcacaaacgc gataatcggt ggaaatgagg atgcgaggct 540 gactcgcatc ttctatgagg ttgggcgagt gcacgccaat tcacgcctcg cccttgcggc 600 gcatgcatcc accgcactcc gcgtggatgc gtcttaccca acggcttctc ttcttgctga 660 agagttcgtc gggctgtcga agaaatactc gaacttcgcg gccacatttg cgtactccag 720 tttggctgga gtcgttgaac gtattgcccg cgggttggct gcggcttcac tgttcaacga 780 tgttgacagt gatacgctcg cggccaacca gccagtccgt gttagtgccc ttgggactta 840 cgacgggcct gtgaactcga tggtcaacac cgtgttcata ccgcgcctcg tcaactcctc 900 cctcacgggt gacgtcttcg cggtgctcgt gaacgctgtg gcaggcgagg gtggtagcgt 960 tgccactgac acgcttgagg tcaacgctgc cgaccgacgt cccataatcg gtactgtcga 1020 cgctgtgggt ttccctcgtg cggcagtcga tgctctgaga ttgctgggcg ctaatatgat 1080 agcgtcgaat cagggtcctt tgttcgctct cgctctagtc cgtggtttgc acaaaacgct 1140 gactgtcgtc ggacacaccg acgagggagg ggtcactcgt gaccttttaa gggctcagag 1200 tttcggagtg cccttcggtg gcattcatta tggtctcgac gtctacgccg gcctgcccgc 1260 cctcgcgaca aattctgccg cggacgtggc gagctatgtc gacgctctcg ccctcgcatc 1320 tgtctactgc ggggcttcta acggtgaggc agagactcgg tccgggaccc acatcgcggg 1380 tacggacgag atggcgtctc acaaccggtc ccagttagtc gctgacttag ctaagttcag 1440 tgatatatac gtgccggccc tagcgcgcat ctttcaatgt gggggagacc cggctatcgc 1500 cgcttccgct ttgacgtcgg ccgggcacgc acttagcaag cacaaccgac atcttcgcat 1560 ggctaccgtg acgccgttct tctggattga gcctacttca atcctgcctc acgatgcctt 1620 tgggactaga gccgaggctg agggtagtgg ggccctagcg tccagagatg agcccaggac 1680 ccggcctatc ttcgaggata tctggactgc tgataccggt gacctggcat tcagctcata 1740 ccacgtccag ttcaggaatg cgcgctccgc ttggtttctc gcgcattggc atggccatga 1800 gctcaacggt ctgggggcca ctcaggtcag gcagctcgac ccgaatgcca tcatacagcc 1860 gggcggccac cagattgaag aggttagaga ccgggtggag tcggctctcc cactctccgc 1920 ctatctttgg cagaggggac agagcccgtt ctgcgctccc ggggagttca tgaatctcgc 1980 cggcacgatg gggatcatgg tgaaccacta cagctttgac ggtgagggca taccccgcct 2040 tgaacacgta cctactgctc gtgaattcct tgggtccaca gtcactataa ctgttggacg 2100 accccagggg atcaacgaca gtaaggcaaa ctgggcggat tcacaagttc ggagggccag 2160 gacgcgtgca gcccgcgagc tcgctgcatc tgccgcaagg gtcagggcgt tcggtcgacc 2220 ggacgtggct gcgatgccaa tccttactac cgccccccca cctcgtcaca cccctgccca 2280 ctcccctgct cctgcgaggg atcatgacgt gggcggtgga ctcgacggtt ggcggcggac 2340 gtcggtaggg gtcaatgact cgacagcagc ctatccttac ggtgaacctc tgggcgtgac 2400 tgctcagcac cagcctgtcc gcttcccaca gttggcaagg actctagccg gcggagggac 2460 cgctgccaca ccccacccac ccccccaggc caccgggtct gacgatgttt ctgctgatgt 2520 ccccgtcgct cctgcaccta gcgctgcccc gcagagtggg ccgacccccg agtaatggaa 2580 ctactcgacc gtgctaagga cttcggcccc cttggggatg tcttagtcca acacatcaac 2640 tcatgtcctg atataattag cgactttcgc gatactttcg tggggaggct aattaaactg 2700 acgaattcgg ctaattcttc acggtcccgc agttacttgt tacctgcggc agtttctctt 2760 ttatgtcttg gcttcccgtt acaggaagac atgactttcg cggactttat ccggtgggtc 2820 cgggaggcat attcgattga gatcgtcgac tcagctacgt tcgcagagtc aggtctcact 2880 catctaccac ccgggcgttt tgtccgtagg atctgcggtt cgagtgagat tcgtgacaga 2940 gcattcccta agccccagct tctcgctgga cagacaaaga cgaatgtcaa attatctgcg 3000 ctaatcacct ctgccgtggt catgatgggc tctgagaggg tcgccgctct gctgcggagc 3060 tcctggggca tgcggtctga tcgggtgatg tcgaagttgg tttatgcgtt cgtcctgtcc 3120 cgacgcttcg gtgagatcgg gcacaaactc gcgaacttcc tgtccaacag tcctgaagac 3180 gcgaagtacg tctcactcgc gctcaaggcg ctgggcctca attcgactga ttggggttca 3240 gttctctgtg aagctaatac gctagctggc cgtgggacgg gtgatatcga tttggtcact 3300 gaggctgcgc agaggtgtga ctcagactac gtagagtcac acgtcgtgca tgtggacccc 3360 gacgaattga ggacacacgt gagggcggtc atcgagcgtg agttgaagaa cacgcgaccg 3420 atgtcatccc tcgatgactt ttggacgtct cgctggttgt ggtgtgtgaa tgggtcccag 3480 acaactgaaa gttcccttgc tctcgggatc gatccccatt actgtcgttc cactcacaag 3540 cgtgcttaca ggcgatcggc cagtgagcag gtgaaaaatg aacccattac gggttgggac 3600 ggtcacacca gtgtcagcgt cagcgcgaaa ttggaggccg gtaaaacccg ggctattttc 3660 gcttgcgata ctcgaagtta ttttgctttc tcttgggttt tgagtgccgc tcaacgcgac 3720 tgggcgaatt ctcgtgtcct actggacccg ggtgttggag ggcacatagg catgttccag 3780 cgcatctccc gagcccagag aggcggggga gtcaatctca tgctggatta tgatgacttc 3840 aattcgcaac actccacgac gtcgatgcag gtggtcttcg aggtgctttg tgacaaatac 3900 aattgtccca cgtggtacaa agacgtgctc gtcaagagct tcgaccggat gtatgtcaat 3960 tgtggaaacg agcgacggaa agtcctcggg accctcatga gtgggcatag aggtacgacg 4020 tttatcaaca gcgtcctcaa tgccgcatac atccgcatgg ccgtgggagg gcagaaattc 4080 gatcgcatgc tgtcactgca cacgggcgac gacgtctaca tcagggcgaa caccctttcc 4140 gactgcgttc agatactcga ttcgaccaaa cgtctgggtt gccgcatgaa ccccacgaaa 4200 cagtcgattg ggtacaaggg agcggagttc ttgcggatgg gtatgcggcg ggatgattgt 4260 ttcggttatt tccctagggc gctcgcctct tttattagtg gcaactgggc aaacaccgac 4320 ccgctggacc cagtcgaggg gcttcgctgc gccatcggcg gttgtcggtc tctcatcaac 4380 cgagggatgg tcccggcggt ggctgaactg gtcgctccat ctctgcgtta ccgtacgggc 4440 ttgggtgctc gcacgctctg caaaatgctt gctggtgaaa ttgccatcga aggcgctcct 4500 gtcttcggtg gcagtggatt catttcgacc taccgcgttg agacgcgtgt agaagaccgg 4560 attcgcgtgg acaagaggtg ggccaggtac gcgaccggtg actacctggc ccaccataca 4620 acgtcaattg aagcggcggc ccttgagatg agcggctcgg cggggaccaa cttactcatt 4680 atctcgagct atgtaagggg attgaatgag gaacgggttc aacccaagcc agctccctct 4740 tggaagaagc ttcctcggat taacctacgt ggttatgctt gtgcgtccga ccttgtaaat 4800 aaacagcgca agcggggggt actatcccaa tatcccctga tcaatctgat caaaaatcga 4860 ctggatgagt ccatgctacg tgctctcatt tcggaagagt tgggttacgt gcctgagggc 4920 gagccgttca aaatcgcctt cggagaggat agccactcga agaggatact aggtgttcta 4980 tcgtacgctg acgcgagctc gttttgctca cggacagaga gcggtagtat ttacactctc 5040 tatcgggttg ctatgtaaac agactaagtg gtactgccta cggtacccac atttcattgc 5100 cccgcaaggg gcaaatctcg aaaaatcgag ctatcagccg ggcagcctag aaagcacgcc 5160 gtttcgttac ccggctcggt ttttcgcccc tggggtcgtg ccgtggatcc ggctcgacaa 5220 gcgggtatgg ggataagcta gattaggccc cgggggatat ctgacagtag ccagacggtc 5280 tggaatttgg acgcgtgtcc cgagtcaacg gtgaggtgtt ccggtagggg gtaaggtggt 5340 gcgtggacca caaccttcac gagagagcgg tctgcgatgt agctcctcgg ctcctagcac 5400 caagtacccg acgggcttgc ctagtgaatg gcgcacgcgg ggatgccggc tcatccaatg 5460 tcctgtcaga tgcgtattgt actaacgcgc cgctaagtac gaaacctcct cagaaaagaa 5520 tgcgggttcg actcccgtgg gggggggcca tgttgccttt tttcccg 5567 //