Dbfetch

Dbfetch

ID   JX524556; SV 1; linear; viral cRNA; STD; VRL; 831 BP.
XX
AC   JX524556;
XX
DT   10-DEC-2012 (Rel. 115, Created)
DT   10-DEC-2012 (Rel. 115, Last updated, Version 1)
XX
DE   Groundnut bud necrosis virus isolate Okra Nas nucleocapsid protein (N)
DE   gene, complete cds.
XX
KW   .
XX
OS   Groundnut bud necrosis virus
OC   Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes;
OC   Bunyavirales; Tospoviridae; Orthotospovirus.
XX
RN   [1]
RP   1-831
RA   Kunkalikar S., Beradpatil B., Kurulekar M., Rajagopalan P.,
RA   Anandalakshmi R.;
RT   "Groundnut bud necrosis virus and Okra yellow vein mosaic virus - Mixed
RT   infection in okra in India";
RL   Unpublished.
XX
RN   [2]
RP   1-831
RA   Kunkalikar S., Beradpatil B., Kurulekar M., Rajagopalan P.,
RA   Anandalakshmi R.;
RT   ;
RL   Submitted (27-AUG-2012) to the INSDC.
RL   Plant-Virus Interactions Lab, Maharashtra Hybrid Seeds Co Ltd, Jalna -
RL   Aurangabad road, Jalna, Maharashtra 431 203, India
XX
DR   MD5; 2d9e3cbdc1e8f4205cb013a70cd22b8c.
DR   EuropePMC; PMC4908995; 27366771.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: BioEdit v. 2012
CC   Sequencing Technology :: Applied biosystem
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..831
FT                   /organism="Groundnut bud necrosis virus"
FT                   /host="okra"
FT                   /isolate="Okra Nas"
FT                   /mol_type="viral cRNA"
FT                   /country="India"
FT                   /collected_by="Suresh Kunkalikar"
FT                   /note="serogroup: WSMoV; PCR_primers=fwd_name:
FT                   pvil-gbnv-for, rev_name: pvil-gbnv-rev"
FT                   /db_xref="taxon:198612"
FT   gene            1..831
FT                   /gene="N"
FT   CDS             1..831
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /db_xref="GOA:K9UUD0"
FT                   /db_xref="InterPro:IPR002517"
FT                   /db_xref="UniProtKB/TrEMBL:K9UUD0"
FT                   /protein_id="AFY98538.1"
FT                   /translation="MSTVKQLTEKKIKELLAGGSADVEIETEDSTPGFSFKAFYDANKT
FT                   LEITFTNCLNILKCRKQIFAACKSGKYVFCGKTIVATNTDVGPDDWTFKRTEAFIRTKM
FT                   ASVVEKSKNDAAKQEMYNKIMELPLVAAYGLNVPASFDTCALRMMLCIGGPLPLLSSMT
FT                   GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKNELEEMFKSAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSASLSMDDYGEHSKKKSPKAGTSLEL"
XX
SQ   Sequence 831 BP; 271 A; 141 C; 179 G; 240 T; 0 other;
     atgtctaccg ttaagcaact caccgagaag aaaatcaaag aacttttggc tggtggctct        60
     gcagatgttg aaattgaaac agaagattct actcccggat ttagctttaa agctttctat       120
     gatgctaaca aaactcttga aataactttc acaaactgtt tgaatatttt gaagtgcagg       180
     aagcagatct ttgctgcttg taaaagtggt aagtatgttt tttgtggtaa aactattgtt       240
     gctacaaata ctgacgtagg gccagatgac tggaccttca aaaggacaga ggcttttatc       300
     aggaccaaaa tggctagtgt ggttgaaaag agcaagaatg atgctgctaa gcaggagatg       360
     tacaataaaa taatggaatt accattagtg gcagcttatg gattaaatgt tcctgcatct       420
     ttcgatacat gtgctctaag gatgatgctc tgcattggag gtcctctgcc tctcttgtct       480
     agcatgacag gtctggcacc aattatattt cctctggctt attatcaaaa tgtgaagaaa       540
     gagaaattag gaattaagaa cttttctact tatgaacagg tttgcaaagt agccaaagta       600
     ctttctgctt cacagattga attcaaaaat gaactagagg aaatgtttaa atcagctgta       660
     aagctattga gtgagagcaa ccctggaaca gccagctcta tctcactcaa gaaatatgat       720
     gagcaagtca aatacatgga caaagctttc agtgccagtc tctcaatgga tgattatggt       780
     gaacattcta agaagaagag tccaaaggct ggtacttcgc tggaattgta a                831
//