ID   JX524198; SV 1; linear; genomic RNA; STD; VRL; 1289 BP.
XX
AC   JX524198;
XX
DT   19-MAR-2013 (Rel. 116, Created)
DT   19-MAR-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Cowpea mild mottle virus isolate D1 coat protein (CP) and nucleic acid
DE   binding protein (NaBP) genes, complete cds.
XX
KW   .
XX
OS   Cowpea mild mottle virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1289
RA   Yadav M.K., Godara S., Biswas K.K.;
RT   "Molecular characterization of Cowpea mild mottle virus infecting soybean
RT   in India";
RL   Unpublished.
XX
RN   [2]
RP   1-1289
RA   Yadav M.K., Godara S., Biswas K.K.;
RT   ;
RL   Submitted (23-AUG-2012) to the INSDC.
RL   Advanced Centre for Plant Virology, Division of Plant Pathology, Indian
RL   Agricultural Research Institute, Pusa Campus, New Delhi, Delhi 110012,
RL   India
XX
DR   MD5; 01e958065bf69f0d035734eeeef8c816.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: Bioedit v. 7.1.3.0
CC   Coverage              :: 3x
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1289
FT                   /organism="Cowpea mild mottle virus"
FT                   /host="soybean"
FT                   /isolate="D1"
FT                   /mol_type="genomic RNA"
FT                   /country="India:New Delhi"
FT                   /collected_by="Manoj K Yadav"
FT                   /collection_date="12-Sep-2011"
FT                   /identified_by="Kajal K Biswas"
FT                   /PCR_primers="fwd_name: kms11f, fwd_seq:
FT                   atggagtcwrtvtttgatt, rev_name: kms10r, rev_seq:
FT                   ttttttttttttttttttttt"
FT                   /db_xref="taxon:67761"
FT   gene            1..867
FT                   /gene="CP"
FT   CDS             1..867
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:M4Q5C5"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:M4Q5C5"
FT                   /protein_id="AGH18394.1"
FT                   /translation="MESIFDLNNLFDNTMTEKEKPGVPKAPDGTLLPDIDAELQKRLDS
FT                   LREFLRKTQNASEITNPGFELGRPALKQSTFNSDRHTHIYGKWSIDQLSRIVPKKISNN
FT                   MATAEEMAKVQITLEGLGVPTEHVAEVLLQVAIYCKDTSSSAYMDSSGTFDWKGGSILS
FT                   DSVIAALRKDENTLRRVCRLYAPVTWNFMLTHKAPPSDWAAMGFKYSDRYAAFDCFDYV
FT                   ENPAAIQPAEGLIRKPTPSEKIAHNTYKRLALDRSNRNEHFTNLNTEVTGGTLGPEISR
FT                   NFNHAKK"
FT   gene            867..1169
FT                   /gene="NaBP"
FT   CDS             867..1169
FT                   /codon_start=1
FT                   /gene="NaBP"
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:M4Q590"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:M4Q590"
FT                   /protein_id="AGH18395.1"
FT                   /translation="MLGYKRLSVILYLCFKRCGVNLPFDLCVLISIRVDPYQVGGGKSS
FT                   YAKKRRAAAIGRCHRCYRVNPRFYFTKRCDGVKCVPGINHKLWVEEFIKNGIKGE"
FT   3'UTR           1170..>1289
XX
SQ   Sequence 1289 BP; 388 A; 243 C; 297 G; 361 T; 0 other;
     atggagtcta tctttgattt aaataacttg tttgataaca ccatgactga gaaagaaaag        60
     ccaggggtgc ccaaagctcc agatggtaca ttgttgcctg acattgatgc tgaattgcag       120
     aaacgtttag attccctcag ggagttcctg aggaaaaccc aaaatgcctc agaaattacc       180
     aatcctggtt ttgaattggg acgacctgct ctaaagcaat caactttcaa ttcagatcgc       240
     catactcaca tttatggcaa atggtctatt gatcaattga gtaggatagt ccccaagaag       300
     atatccaaca acatggctac cgctgaagag atggctaaag ttcagattac cctggaaggt       360
     ctgggtgttc ccactgaaca tgtggccgaa gtgttactcc aggttgcaat atattgcaaa       420
     gacaccagct catcagcgta catggattcc agtgggacat ttgattggaa aggaggctca       480
     atcttgtcag actctgttat tgctgcttta agaaaagatg agaatacctt gagaagggta       540
     tgccgtcttt acgcccctgt aacttggaac tttatgctaa cacataaggc tcccccttcc       600
     gattgggctg caatgggttt caagtattca gatcggtatg cagcttttga ttgcttcgac       660
     tatgttgaaa atccagctgc gattcaacct gcagagggct taataaggaa gccaacgcca       720
     agcgaaaaaa ttgctcataa tacttacaag aggctagcct tagataggtc caaccgaaat       780
     gaacacttta ccaatttaaa tactgaagtg acaggaggca cgctaggacc agaaatctca       840
     aggaacttta atcacgcgaa gaagtgatgt tgggttataa gagactctca gtcattctgt       900
     atttgtgttt taaaaggtgt ggagtcaatt tgccatttga tttgtgtgtt ttaatttcaa       960
     taagagtgga cccctatcaa gttggtggag gtaaatcttc ttacgcaaag aagagaaggg      1020
     ccgccgccat tggtagatgc cacagatgtt atcgtgtgaa tcctaggttt tactttacta      1080
     aaaggtgtga tggtgtgaag tgtgtcccgg gtattaacca taaattatgg gttgaggaat      1140
     tcattaaaaa tggaattaag ggggagtaac tgaggtgatc ccccttacgc aactcttgaa      1200
     ccaaggaaag agtataaaga gtccttgtat ccttcaaacc taattgtgga aggttaagaa      1260
     ccggtttaaa agtgattttc ctggtttta                                        1289
//