ID JX524172; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC JX524172; XX DT 28-OCT-2012 (Rel. 114, Created) DT 23-JUN-2016 (Rel. 129, Last updated, Version 3) XX DE Tomato leaf curl virus isolate Lucknow segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RA Raj S.K., Snehi S.K., Srivastava A.; RT "Molecular identification of Tomato leaf curl Karnataka virus associated RT with leaf curl disease of Parthenium hysterophorus in India"; RL Unpublished. XX RN [2] RP 1-2760 RA Raj S.K., Snehi S.K., Srivastava A.; RT ; RL Submitted (23-AUG-2012) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 9ca1a7cd3918e6dfdb21c358bdc47935. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Tomato leaf curl virus" FT /segment="DNA-A" FT /host="Parthenium hysterophorus L." FT /isolate="Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /collected_by="Sunil Kumar Snehi" FT /collection_date="Aug-2012" FT /db_xref="taxon:28350" FT gene 144..500 FT /gene="AV2" FT CDS 144..500 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:K4NNV8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K4NNV8" FT /protein_id="AFV46149.1" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHSRFEGTSPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQ FT KAQDVQDVQKSRCP" FT gene 304..1074 FT /gene="AV1" FT CDS 304..1074 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:K4NRQ9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K4NRQ9" FT /protein_id="AFV46150.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1071..1475) FT /gene="AC3" FT CDS complement(1071..1475) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:K4NPI3" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K4NPI3" FT /protein_id="AFV46151.1" FT /translation="MDSRTGELITAAQAENGVFIWEIQNPLYFKITEHHNRPFLMNQDI FT ITVQVQFNHNLRKVLGIHKCFLVFRIWMTSQPPTGRFLRVFKTQVLKYLNNLGVISINN FT VIRAVDHVLWNVLHHVVYVNQTYSIKFNIY" FT gene complement(1216..1620) FT /gene="AC2" FT CDS complement(1216..1620) FT /codon_start=1 FT /gene="AC2" FT /product="transcriptional activator protein" FT /db_xref="GOA:K4P2Z1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K4P2Z1" FT /protein_id="AFV46152.1" FT /translation="MRSSSPSKAHSTQVPIKVSHRLAKKGNRRRRVDLPCGCSYFIALA FT CHDHGFTHRGTHHCSSSREWRVYLGDSKSPIFQDNRASQPAIPDEPRHHHSPSTVQSQP FT EESVGDTQMFPSLPNLDDLTASDWSFLKGI" FT gene complement(1523..2608) FT /gene="AC1" FT CDS complement(1523..2608) FT /codon_start=1 FT /gene="AC1" FT /product="replication associated protein" FT /db_xref="GOA:K4NRL3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K4NRL3" FT /protein_id="AFV46153.1" FT /translation="MAAPNRFKINAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIR FT ICRELHEDGTPHLHVLIQFEGKFQCKNNRFFDLTSPTRSAHFHPNIQGAKSSSDVKTYM FT EKDGDILDHGVFQVDGRSARGGCQSANDAYAEAINAGSKIEALNILREKAPKDYVLQFH FT NLNCNLDRIFTPPVEVYVSPFLSSSFDQVPEELEEWAADNVSSAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLNLSQKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNIKYGKPVQIKGGIPTIFLCNPGPKSSYKEFLDEEENTGLKNWAVKNAIFVTLEGPL FT YSGSNQSESQASQEGEQASSC" FT gene complement(2158..2451) FT /gene="AC4" FT CDS complement(2158..2451) FT /codon_start=1 FT /gene="AC4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K4NNW3" FT /protein_id="AFV46154.1" FT /translation="MGLLTCMFSSSSKENSSARTIDFSTLPPQPGQHISIRTFRELKAQ FT AMSKPTWRKTETSLIMEFFKSMEDQLEEVANLPTTHMPRQSTQGPKLRPSIY" XX SQ Sequence 2760 BP; 753 A; 548 C; 621 G; 838 T; 0 other; accggatggc cgcgaatttt tttgtgggcc cctcaacgca ctaactgaca aggacatgct 60 aaccaatcac atgacgcgct caaagcttaa ttgttttgtg gtcccctatt taaacttcgg 120 caccaagtat tgtattttgc actatgtggg atccattatt aaacgagttt cctgaaaccg 180 ttcacggttt tagatgtatg ttagcagtta aatatttgca gttagtagaa aagacctatt 240 ctcccgacac attaggttac gatttaatta gggatttaat ttcagttatt agggctagaa 300 attatgtcga agcgaccagc agatataatc atttccactc ccgcttcgaa ggtacgtcgc 360 cgtctcaact tcgacagccc atatgtgagc cgtgctgctg cccccattgt ccgcgtcacc 420 aaagcaaaag catgggcgaa caggcccatg aacagaaagc ccaggatgta caggatgtac 480 agaagtccag atgtccctag aggatgtgaa ggcccatgta aggtccagtc gtttgagtcc 540 agacacgatg tagtccatat aggcaaggtc atgtgtatta gtgatgtcac tcgtggaacc 600 gggctgaccc atcgagtggg taaaaggttt tgtgttaagt ctgtttacgt tttggggaag 660 atatggatgg atgagaacat caagaccaag aaccacacga acagtgtcat gttttttctt 720 gttcgtgacc gtcgtcctgt tgacaagcca caagactttg gagaggtgtt caatatgttt 780 gacaacgagc ctagcactgc tactgttaag aatatgcaca gagatcgtta tcaggtgttg 840 aggaagtggc atgcaactgt caccggtgga cagtacgctt caaaggaaca ggcattagtg 900 aagaagtttg ttagggttaa taattatgtt gtttataacc agcaagaggc tgggaaatat 960 gagaatcatt ctgagaatgc attgatgttg tatatggcgt gtactcacgc ctctaaccct 1020 gtgtatgcta ctttgaagat acggatctat ttctatgatt cagtatcgaa ttaataaata 1080 ttgaatttta ttgaatatgt ttggtttaca tatacaacgt ggtgtaatac attccataat 1140 acatgatcaa cggctctaat tacattgtta atactgataa ctcctaaatt atttaaatac 1200 ttaagcactt gggtcttaaa tacccttaag aaacgaccag tcggaggctg tgaggtcatc 1260 cagattcgga agactaggaa acatttgtgt atccccaaca ctttcctcag gttgtgattg 1320 aactgtactt ggactgtgat gatgtcttgg ttcatcagga atggccggtt gtgatgctct 1380 gttatcttga aatatagggg attttgaatc tcccagataa acacgccatt ctctgcttga 1440 gctgcagtga tgagttcccc tgtgcgtgaa tccatggtcg tggcaggcta atgctatgaa 1500 gtaagaacag ccgcacggta gatcaacacg acgacgcctg ttccccttct tggctagcct 1560 gtgactcact ttgattggaa cctgagtaga gtgggccttc gagggtgacg aagatcgcat 1620 tctttaccgc ccaattttta agtccagtat tttcctcttc atccaagaat tctttatagc 1680 tagatttggg tcctggattg cagaggaaga tagtgggaat tccgccttta atttgaactg 1740 gctttccgta ttttatattg ctttgccagt ccctttgggc ccccatgaat tccttaaagt 1800 gctttagata atgcggatca acgtcatcaa tgacgttata ccacgcatca ttattgtaga 1860 ctttttggct aaggtttaga tgaccacata gataattatg tggtccaagt gatctggccc 1920 acatcgtctt cccagttcta ctgtcaccct caatcactat actcatgggt ctcagaggcc 1980 gcgcagcggc actggaaaca ttatcggcag cccattcctc aagttcttct ggaacttggt 2040 caaaagaaga agataaaaaa ggagaaacat aaacctccac aggaggtgta aaaatcctat 2100 ctaaattaca atttaaattg tgaaattgta aaacataatc tttgggagcc ttctccctta 2160 atatattgag ggcctcaatt ttggaccctg cgttgattgc ctcggcatat gcgtcgttgg 2220 cagattggca acctcctcta gctgatcttc catcgacttg aaaaactcca tgatcaagga 2280 tgtctccgtc tttctccatg taggttttga catcgcttga gcttttagct ccctgaatgt 2340 tcggatggaa atgtgctgac ctggttgggg aggtaaggtc gaaaaatcta ttgttcttgc 2400 actggaattt tccttcgaac tggatgagaa catgcaagtg aggagtccca tcttcgtgaa 2460 gctctctgca gattctaatg aattttttag aagttggtgt ttggagattt aagaattggg 2520 aaagtgcttc ttctttagtg agggagcact tgggataagt gagaaaataa ttttttgcat 2580 ttattttaaa ccgatttggg gctgccatgt tgacttagtc aatcggtgtc tctcaatttg 2640 ttctatgtat cggtgtactg gagtcctata tatatggaga ctctaatggc ataattgtaa 2700 taaaagaaat ttggtaagaa attcaaaatt acacgctaaa gcggccatcc gtataatatt 2760 //