ID JX518289; SV 1; circular; genomic DNA; STD; VRL; 2737 BP. XX AC JX518289; XX DT 03-OCT-2012 (Rel. 114, Created) DT 03-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Jatropha curcas mosaic virus isolate ICMV-IN:SG:12 segment DNA-A, complete DE sequence. XX KW . XX OS Jatropha curcas mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2737 RA Wang G., Ye J.; RT "A new strain of Indian cassava mosaic virus causes a mosaic disease in the RT biodiesel crop Jatropha curcas"; RL Unpublished. XX RN [2] RP 1-2737 RA Wang G., Ye J.; RT ; RL Submitted (22-AUG-2012) to the INSDC. RL Temasek Life Sciences Laboratory, Host-pathogen Interaction, National RL University of Singapore, 1 Research Link, Singapore 117604, Singapore XX DR MD5; 50ee9e4f3cff3d0ddd3a817d056180ff. DR EuropePMC; PMC4210599; 25352912. XX CC ##Assembly-Data-START## CC Assembly Method :: Vector NTI v. 1.0 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2737 FT /organism="Jatropha curcas mosaic virus" FT /segment="DNA-A" FT /host="Jatropha curcas" FT /isolate="ICMV-IN:SG:12" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="15-Mar-2012" FT /db_xref="taxon:1027398" FT gene 134..463 FT /gene="AV2" FT CDS 134..463 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:K0E2I1" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K0E2I1" FT /protein_id="AFT91415.1" FT /translation="MWDPLLNEFPDSVHGFRCMLAVKYLQLVEGTYSPDTLGYDLIRDL FT ISVIRAKNYVEATSRYHHFNSRLEGTSPSDLRQPIQQPCFCPHCPRHKKTSLDKQAHES FT EAQMV" FT gene 294..1064 FT /gene="AV1" FT CDS 294..1064 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:K0DZB7" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:K0DZB7" FT /protein_id="AFT91416.1" FT /translation="MSKRPADIIISTPVSKVRRRLTFDSPFSSRASVPTVRVTKRQAWT FT NRPMNRKPRWYRMFRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT VGKRFCVKSVYILGKVWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWSATVTGGQYASKEQALVRRFFRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVSN" FT gene complement(1061..1465) FT /gene="AC3" FT CDS complement(1061..1465) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer" FT /db_xref="GOA:K0E3X5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:K0E3X5" FT /protein_id="AFT91417.1" FT /translation="MDSRTGEIITAAQAMNGVFIWEVINPLYFKIIQHDNKPFGMTMDI FT ITIQIRFNHNLRKALGLHQCWMDFKVWTNLQPQTWRFLRVFKTQVLKYLVSLGIISINT FT VVNAVEHVLYNVLDGTDSVEQSNLIKFNVY" FT gene complement(1206..1613) FT /gene="AC2" FT CDS complement(1206..1613) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:K0E4F8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:K0E4F8" FT /protein_id="AFT91418.1" FT /translation="MQPSSPSKSHCTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHI FT NCHNHGFTHRGNHHCSSGDEWRLYLGGNKSPLFQDHSARQQTVRNDDGHNNHPDTIQPQ FT PEESIGTTPMLDGFQGLDELTASDLAFLEGI" FT gene complement(1543..2601) FT /gene="AC1" FT CDS complement(1543..2601) FT /codon_start=1 FT /gene="AC1" FT /product="replication-associated protein" FT /db_xref="GOA:K0E6A3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:K0E6A3" FT /protein_id="AFT91419.1" FT /translation="MSPPMHFLINAKNYFLTYPRCSLTKEEALSQIRALQTPTNTKFIK FT ICKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPNRSAHFHPNVQGAKSSSDVKSYI FT DKDGDTLEWGTFQIDGRSARGGQQSANDAYAAALNSGSKSEALKILRELAPRDYLRDFH FT HISSNLDRIFTTKPAPYQNPFSLSSFDRVPEELDEWFHENVMDAAARPLRPKSIVIEGD FT SRTGKTMWARALGPHNYLCGHLDLNPKVYNNDAWYNVIDDVDPHYLKHLKEFMGAQKDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALKAWALKNATFISLEEPL FT YSGTNQGPTQSC" FT gene complement(2142..2444) FT /gene="AC4" FT CDS complement(2142..2444) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:K0E2I5" FT /protein_id="AFT91420.1" FT /translation="MGNLICTCSSSLKANTNARINDSSTWYPQTGQHISIRTFRELNPA FT PTSSPTSTRTVIHWNGEHSRSMEDLPEGVNNLQTTLTPQHLTAAVNQRLLRSLGN" XX SQ Sequence 2737 BP; 680 A; 585 C; 649 G; 823 T; 0 other; accggatggc cgcgcccccg ctttgtggtg gaccccccca cgtggagatg tcccccaatc 60 agaacgctcc gtcaaagctt gaataattgt ggtccctctt taagtacttg ctcagcaagt 120 ttgaaactgc acaatgtggg accctttgtt aaacgagttc cctgattccg ttcacggttt 180 ccggtgtatg ctagccgtga aatatctgca gttggttgaa ggtacctatt ctcccgatac 240 tctcggttac gatctaatca gagatttgat ctctgtcatt agggcgaaga attatgtcga 300 agcgaccagc agatatcatc atttcaactc ccgtctcgaa ggtacgtcgc cgtctgacct 360 tcgacagccc attcagcagc cgtgcttctg tccccactgt ccgcgtcaca aaaagacaag 420 cctggacaaa caggcccatg aatcggaagc ccagatggta taggatgttc agaagcccag 480 atgttcctaa gggatgtgaa ggcccatgta aggtccagtc gtttgagtcc agacacgatg 540 tggtccatat aggtaaggtt atgtgcatct ctgatgtcac tcgtggtgtt gggctaactc 600 atcgcgtggg taagaggttt tgcgttaagt ccgtttacat cctgggtaag gtatggatgg 660 atgaaaatat caagaccaag aatcacacca atagcgtgat gttcttcctc gttagggatc 720 gtaggcctgt tgataagccc caggatttcg gtgaggtgtt taacatgttt gataatgaac 780 ctagtacagc tactgtgaag aacatgcatc gtgatcgcta tcaagtcctc aggaagtgga 840 gtgccaccgt cactggtggt cagtatgcta gcaaggaaca ggctttagtt aggcgtttct 900 ttagagttaa taactatgtt gtgtataatc agcaagaggc tggcaagtat gaaaaccata 960 ctgagaatgc attgatgttg tacatggcgt gtactcacgc ctctaatcct gtatatgcta 1020 cgctgaaaat tagaatctat ttttatgatt cggtcagcaa ttaataaaca ttaaatttta 1080 ttaaattaga ctgctcaaca ctgtcagtcc catcgagtac attgtacaat acatgctcta 1140 cggcatttac aactgtatta atacttataa tccctaaact aacgaggtat tttaatactt 1200 gggttttaaa taccctcaag aaacgccagg tctgaggctg taagttcgtc cagaccttga 1260 aatccatcca gcattggtgt agtcccaatg ctttcctcag gttgtggttg aatcgtatct 1320 ggatggttat tatgtccatc gtcattccga acggtttgtt gtcgtgctga atgatcttga 1380 aatagagggg atttattacc tcccagataa agacgccatt catcgcctga gctgcagtga 1440 tgatttcccc tgtgcgtgaa tccatggttg tggcagttga tgtgtacgta gtatgagcac 1500 ccacagttta gatcaaccct cttacgccgg atggctctac gcttagcagc tctgtgttgg 1560 accttgattg gtacctgagt acagtggctc ttcgagggag atgaaggttg cattttttag 1620 tgcccaggct tttaatgcgc tattcttttc ttcgtccagg aactctttat agctggaatt 1680 gggccctgga ttgcagagga agatagtggg aataccacct ttaatttgaa ctggcttgcc 1740 gtactttgtg tttgattgcc agtccttctg ggcccccata aattccttta agtgctttag 1800 atagtgggga tcgacgtcat cgatgacgtt gtaccatgca tcattgttgt agaccttagg 1860 attgagatcc agatgtccac ataagtaatt atgtggaccc aatgcacgag cccacatagt 1920 cttacctgtc cgactatcgc cttcgattac gattgattta ggtctcaaag gccgcgcagc 1980 ggcatccatc acgttttcgt gaaaccactc gtcgagttct tctggaactc ggtcaaatga 2040 agagagggag aaagggtttt gatacggagc cggttttgtt gtaaaaatcc gatccaggtt 2100 ggagcttata tgatggaagt ctcttaaata atccctaggt gctaattccc taaggatctt 2160 aagagcctct gatttactgc cgctgttaag tgctgcggcg taagcgtcgt ttgcagattg 2220 ttgaccccct ctggcagatc ttccatcgat ctggaatgtt ccccattcca atgtatcacc 2280 gtccttgtcg atgtaggact tgacgtcgga gctggattta gctccctgaa cgttcggatg 2340 gaaatgtgct gacctgtttg gggataccag gtcgaagaat cgttgattct ggcatttgta 2400 tttgccttca aactggatga gcacgtgcag atgaggttcc ccattctcgt ggagttcctt 2460 gcagattttg atgaatttag tgtttgttgg tgtttgaagc gctctaattt gtgaaagtgc 2520 ctcttcttta gttagagagc acctaggata agtgaggaaa tagtttttag cgtttattag 2580 aaagtgcata ggtggagaca ttctctctcc tcaatcggta ctcagctagc tttatctccc 2640 atattaggta ctcaatatat acatgagtac caaatggcat atatgtaaat aatgggaata 2700 taatttgaat ttgaaagcgg cccatccgta taatatt 2737 //