ID JX513896; SV 1; linear; genomic RNA; STD; VRL; 6506 BP. XX AC JX513896; XX DT 28-OCT-2012 (Rel. 114, Created) DT 28-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine Syrah virus 1 isolate GSV1 3138-01 polyprotein gene, complete DE cds. XX KW . XX OS Grapevine Syrah virus 1 OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RP 1-6506 RA Rott M.E., Belton M., Saeed H.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-6506 RA Rott M.E., Belton M.; RT ; RL Submitted (21-AUG-2012) to the INSDC. RL Centre for Plant Health, Canadian Food Inspection Agency, Sidney RL Laboratory, 8801 East Saanich Rd, North Sanich, British Columbia V8L 1H3, RL Canada XX DR MD5; 5a7f84e861d7d0c492defb0c6bc10590. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCBio Genomic Workbench v. 4.5 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6506 FT /organism="Grapevine Syrah virus 1" FT /host="Vitis vinifera" FT /isolate="GSV1 3138-01" FT /mol_type="genomic RNA" FT /country="USA:California" FT /collection_date="Sep-2010" FT /db_xref="taxon:630199" FT CDS 142..6387 FT /codon_start=1 FT /product="polyprotein" FT /note="contains viral methytransferase (pfam01660), FT tymovirus endopeptidase (pfam05381), viral RNA helicase FT (pfam01443), RNA-dependent RNA polymerase (pfam00978) and FT tymovirus coat protein (pfam00983) domains" FT /db_xref="GOA:K4MWB8" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4MWB8" FT /protein_id="AFV34757.1" FT /translation="MAAPATAYASPSAAFFALFQEQDLRCFRPLTLAHSLRYDAPVRPR FT QLPRLRSITVPITSLDEGFTPILIARPSLPLLGGGLKELVEMLAPTTHRDTVASPILEA FT VAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAHPHPVHKTIEIHLLFEHWLNL FT CRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTRYEQVAVAPPTQAVWFMHDA FT LQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFPEIYRYSFAGSRLNYQLEG FT NPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSLLIQRGKPSVHLEHDEVS FT FVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLRTTDPVGFVRTQSNKAE FT YSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQHKLGLLTVTTPPACG FT LTLFTGAKLASAMSSRLTALAVFHHWVVPPPTLFFTPKAPLLAIQLTRLPQPLFSSVPF FT LHKPLGKLSLRLLNRFPFLRRFFPDAPIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQ FT ALNDHYVRFFHPDRWQLTFERQPRFVALDRTFPWPLPQAPEPTEPRDSDVPLETVPSPL FT PVVAPLPAPATSVPPVDTSATTVSAVEPSLSTESLKTVEAPSGTTILQPRELKDTIFPL FT PAAALAVTPPEPAPAPAEPVSASTVLGTAPLSRDLHTGHVSTPATEPGLVEPEHSPLAA FT DSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLLAAVSAGANIPKD FT ALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGNQFVLGVEHPSV FT SFHIDHTPESATAPGHFSLRADERQHSPRLLGGRAADLVHAALKFKVGSAVLPFQQAHD FT YTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAMDIAAPRDVKLIHIA FT GFPGCGKSYPIAQLLKSRAFKHFKIAVPTVELRNEWKGVLKVKPQDNWRISTWESSLLK FT SARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTHSDSSNHRLSSEVK FT HLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLRQLANSQSAAKVL FT NQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSGVIFTGDKRVLE FT APGGNLLFSSYFQEKKVDLRALFPTEFPCCPILLEPLKRRPTDLTGGAPFPFRDEARVF FT NPERRDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLT FT DTFIEPVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCA FT AVHHSKKDPTLLAASIEKRLRFRASDAPYQITAKDEILGSMLFEAHCRAMRRDPNVRVP FT FDEALFAECIALNEFAQLTSKTQAVIMANHERSDPDWRHTAVRIFAKNQHKVNSGSLFG FT PWKACQTLALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTP FT RSASSPVPVMVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLIA FT LHIMIKTHITTQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSGQWLSENPLWPAI FT KPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATEF FT AIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFAT FT WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLH FT IPPTANAQMSDDALSGRTRSQRDPDHRVDPQPSLPLAPSVQETSGGPAITVPFQWVALV FT VKSESTIFTVDPPRAKSLTQLIGPYRHARLLSLEVILMPTLNAFQNPVTVHMVWTVNTV FT QPASGEELFYPGGQALTVGGPVSMSALATVPADVSRLNPVIKGAVAFLDTPRLTGTTMK FT CAKSETSPMAYVVIRGTLALSGPVGTRLSE" XX SQ Sequence 6506 BP; 1181 A; 2441 C; 1417 G; 1467 T; 0 other; tcatgtaaag tctgtctcaa ctgctctcgc atcttgagtc actccttacc ggtcaactgt 60 gctttgccca gttgccaccc cacttcgtgg tctttctttc ttttgttttc actagggtcc 120 ctcggacaac cttctacggt catggcagcc cccgctaccg cctatgcttc ccctagcgcc 180 gctttcttcg ctctcttcca agagcaagat ctgcgttgct tccgccccct cactttagct 240 catagcctcc gctatgatgc ccccgtgagg ccccggcagc tcccccgcct tcgctccatc 300 accgttccta tcacctccct cgatgagggt ttcaccccca tcctcatcgc ccgtccctct 360 cttcccctcc ttggcggtgg tctcaaggaa ttggttgaga tgctcgcccc cactacccac 420 cgcgacaccg tagcttcacc catcctggaa gccgtcgccg gtccccttcg cacctccatc 480 cagcgctacc cctatgaggt gcctgctcat gccgttcccg tcctccaacg tttcggcatt 540 gaggcctctg gttttggttt caaggcgcat ccccacccag tgcacaagac tattgagatc 600 cacctcctgt tcgagcactg gctcaacctc tgtcgttctc cctccgccgt gcttttcatg 660 aaacagagca agttcgagaa gttgcagcac gaaaacgcca acttcgaagc gcttgccaac 720 tacaacctga ccgctcgtga cacgactcgt tatgagcagg tcgccgtcgc cccccccacc 780 caagccgtct ggtttatgca cgacgcgctg cagtacttct cactctccca agtggctgct 840 ttcttcgcgg actgccctca ccttgagaag cttttcgctt ccctcgtcgt ccctccggag 900 tcagacttca ccaacctctc ccttttcccg gaaatttacc ggtacagctt cgctggctct 960 cgcctcaact atcagttgga gggcaacccc ggccactcgt acagccagcc tcgtgaagcc 1020 ctcgaatggc tcaaaaccac caccattcgc tgcggcaacc tctacctcac cgtcaccaag 1080 ctcgagtctt ggggccccgt gcactccctg ctcatccagc gcggcaagcc atccgtgcat 1140 ctggagcatg acgaagtttc cttcgtcggc cctgacgctg ttgctctccc agaagccgcc 1200 gctctccgcc aagacctccg ccaccgcctc gtccctcgca cagtgtacga cgccctcttc 1260 gtttacgttc gtgcggtgcg cactctccgc accaccgacc ctgtcggttt cgtccgcact 1320 caaagcaaca aagcggagta tagctgggtc acctccgctg cctgggacaa cctccagcac 1380 ttcgtcactg aaacggcagc ccatcgggtt ccaaatcggc atttcttctt caactccact 1440 ttcgctaagt gccgctactg gtgctctcag cacaagctcg ggctgctcac ggtcaccact 1500 ccccctgcct gcggcctcac cctcttcacc ggggctaagt tggcctccgc catgagctct 1560 cgcctcaccg ccctcgccgt gttccatcat tgggtggtgc ctcccccaac cctcttcttc 1620 accccgaagg ctcctcttct ggccatccag ctcactcgtc ttccgcagcc actcttctct 1680 tctgtgccct tcttgcacaa gcctctcggc aagctctcgt tgaggcttct caaccgcttc 1740 ccttttctga ggcgcttctt ccccgacgcc ccgataccaa cctgggcccg cctgctcacc 1800 gtggccattg cgctctctcc agccgtctgg ctcgcgatcc gccacttcat tggccccgat 1860 gctcctcaag cgctcaacga ccactacgtg cgcttcttcc accctgaccg ctggcagctc 1920 accttcgaga gacaaccccg cttcgtagct ttggaccgca ccttcccctg gcctctgccc 1980 caagccccgg aacccaccga gccgagagat tcggacgtcc ccctcgaaac cgtcccgagt 2040 cctctacccg tcgtcgcacc tctgcctgcc ccagcaacct ccgtcccccc cgttgacacc 2100 tcagccacca ctgtctccgc tgttgagccc tctctcagca cggaaagcct caaaactgtt 2160 gaggctccct ccggcaccac cattctgcag ccccgtgagc tgaaagacac catctttcct 2220 cttcccgccg ccgctctcgc cgtcaccccg cctgagccag ccccagctcc cgctgaacct 2280 gtcagcgcct ccaccgtcct cggcaccgcc ccactctctc gcgacttgca caccgggcac 2340 gtctcaacgc ccgccactga accgggcctc gttgagccgg agcactctcc tctcgccgca 2400 gattcttcag ccaccggcga ggtctccgag tttttcaacc ttcaccccgc tgattggatc 2460 gctcccaccg ccacgtttct cgcccgccgt cgcggcgaga ccatttctgg agccaagtac 2520 ccagccatgg actgcctctt ggccgccgtt tcggctggag ccaacatccc aaaagacgcc 2580 ctctggaaaa ccatctgctc ctacttcccg gactcgatgc tgcgggagga ggacatcgcc 2640 aagcatggcc tctccactca ccattttgct gccttggccc gtgagcaccg tctgcaggcc 2700 actttccact cagctggcaa ccagttcgtg cttggcgtcg agcacccttc tgtctccttc 2760 cacatcgacc acactcctga gtctgccacc gctcccggcc atttctctct gcgcgccgac 2820 gagcggcagc actctccgcg cctgctcggc ggccgcgcag ccgatctcgt tcatgcagct 2880 ctaaaattca aagtcggcag cgctgtgctt cccttccagc aagcgcacga ttacaccacc 2940 aacgtggctc gtgctaaaaa tttgatcagc aacatgaaaa atggctttga cggtgttctc 3000 gccaacatcg atccggcgca cactaatgag tcccgcgacc gtctcctgtc cttggacggc 3060 gccatggaca tagctgcacc gcgtgatgtc aagctcatcc acatcgccgg tttccctggc 3120 tgtggcaagt cttacccaat cgcccagctc ctcaagtctc gcgcattcaa gcacttcaaa 3180 attgcggtgc ccactgttga attgcgcaac gaatggaaag gtgtcctcaa agtcaaacct 3240 caggacaact ggcgcatcag cacgtgggaa tcaagccttc tcaaatccgc ccgcatcttg 3300 gtcatagacg agatttacaa gatgccaagg ggctatctgg acctggccat tcacgcggac 3360 cccacgatcg acttagtcat cgctttgggg gacccgctcc agggcgtcta ccattcaact 3420 cattctgact catccaacca tcgcctcagc agcgaggtca agcacctgca gccttacatg 3480 gactactact gcctctggtc ccaccgtgtg cctcaagata tcggcacgtt cttcggcatc 3540 aagtctactt ccaccgtccc aggcttcaag tcttaccaag ccaacattcc aagcaacctc 3600 cgccagttgg ccaactctca gtccgccgct aaagtcctca atcagtgcgg cttctcctct 3660 gtcaccatcg cgtcctccca gggatccacc tactctgcgc cggcctgcat ccatctggac 3720 cgccattcca tgtccctcag ccatgctcac tctctcgtcg ctctcactcg cagcaaaagc 3780 ggcgtcattt tcactggcga caagcgcgtt cttgaggccc caggcggcaa cctgctcttc 3840 tcttcttatt tccaggagaa aaaagttgac cttcgcgcgc tctttccaac agagttccca 3900 tgctgcccca ttctgctcga gcctctcaag cgccgcccca cagacctcac tggcggtgct 3960 cctttccctt tccgcgacga ggcgcgcgtc ttcaacccag aacgtcgcga cgacgtcttc 4020 gtcgaggccg ctgtcgtctg cggtgatggc tccagcaacg ctccccaggt cagcactcac 4080 ttcctccctg agactcgccg gcccctccat ttcgacctcc catccgcgaa acccgagttc 4140 gcggcccatg aggcccccgc tccgctcacc gacaccttca tcgagccggt ctaccctggc 4200 gagaccttcg aaaacattgc cgctcacttc ctcccggctc atgatccgga agtcaaagaa 4260 attctgttca aggatcagcg cagcaatcag ttccctttca tagatcagcc attccacgtt 4320 ggggctcagc ctgcttccct ttgcgccgca gtccatcact ccaagaagga tcccactctc 4380 ctcgcagcct ccatcgagaa aaggcttcgc tttcgggctt ctgacgcccc ttatcaaatc 4440 actgccaagg acgagatcct gggctccatg ctgttcgaag cccactgtcg cgccatgcgc 4500 cgggacccca acgtccgcgt accatttgat gaggccctgt tcgctgaatg catcgccctc 4560 aacgagttcg ctcagctcac ttccaagacg caggccgtga ttatggccaa tcacgagcgc 4620 tctgaccctg actggcgcca cacggcagtg cgtatattcg ccaagaacca gcacaaggtc 4680 aattctggct ccctcttcgg cccctggaaa gcttgccaaa ccctcgccct catgcacgac 4740 gccgtgatcc tgctcttcgg ccccgtcaag aagtaccagc tcatccacga tgagcgcgat 4800 cgccctgagc acatcttcat ctatgctggg cgcactcctc aggaaatgtc cgagtggtgc 4860 caaaagttcc tcaccccgcg ctccgccagc tcgcccgtcc cagtcatggt ttccggggac 4920 gactccctca tcggctgcca tccgcacttc gtcgcgaacg actacacagc gttcgatcag 4980 tcccaacatg gtgaagccgc tgttcttgaa cgcctgaaga tggaacgcgt caacatccct 5040 gagtggctca tcgccctgca cattatgatc aagacgcaca tcaccaccca gttcggcccc 5100 ctcacttgca tgaggctcac aggtgaacca ggcacctact ttgacaactc cgattacaac 5160 ctggccgtca ttttcctcga gtattccatg tccgggcaat ggctgtccga aaacccgctc 5220 tggccagcca tcaagccgct cctggccctg cgcttcaaga aagaaaagac ccgctacggc 5280 aacttctgcg ggtactacgt tggcgcagcc ggcgcagttc gcatgcccag ggcactgttc 5340 gccaagatct tcatcgctgt tgaggacgcc tccatcgctg acaagatggc ttcttatgcc 5400 actgagttcg ccattgggca cagtctcggc gacgcgctct ggtccctcct ccctgtcgag 5460 gaggttgtct atcagtcggc cgtcttcgac ttcctttgcc gcaatgctcc gcgggaactc 5520 aaactgctct tcaagctcgg ccctgtcgag cgctctgttg ttgaagcagt ccaagaattt 5580 gccacctggg cttcttacgc cttctaccgc ttcctcaatt cagctcagcg caaggtgctc 5640 ctcactcgct ctccccagct ccacttcccg ggcgatgccc ccgaagtttc ccagcttcag 5700 ggtgaattgc ttcaaagctt ctcaatgatg caaccgaccc ttcccctcac tggcggcttg 5760 catatccctc ctactgctaa cgctcaaatg tctgatgacg cgctctctgg ccgcacccgc 5820 tctcaacgcg atcctgatca tcgtgttgat cctcagcctt ctctgcctct ggctccctcg 5880 gtgcaggaaa cctccggcgg cccggcgatc acggtcccct tccaatgggt cgcacttgtt 5940 gtgaaatctg aatccaccat cttcaccgtc gatcctcctc gcgccaagtc tctcacgcag 6000 ctcatcggtc cctaccgtca cgctcgcctt ctctccctcg aagtcattct catgcccact 6060 ctgaacgcct tccaaaatcc ggtcaccgtc catatggtct ggaccgtcaa cactgtgcag 6120 cccgcctctg gggaagaact cttctacccg ggtggccagg ctctcactgt tggcggccca 6180 gtctccatgt ccgctctcgc caccgtccca gccgacgtct cccgtctcaa cccagtcatc 6240 aagggcgccg tcgccttcct ggacaccccc cgtctcaccg gcaccaccat gaagtgtgcc 6300 aaatctgaaa cctcccccat ggcctacgtg gtcatccgcg ggaccctcgc cctctccggg 6360 cctgtgggta ctcgcctctc tgaataaagc ctccaatgcg cagcaatgcg gttctggtgc 6420 aggtcccaag cgacctgtgg cttaaataaa tgtttgtttt cttttccgtt tgtttgttta 6480 taaaaaaaaa aaaaaaaaaa aaaaaa 6506 //