ID JX513895; SV 1; linear; genomic RNA; STD; VRL; 3761 BP. XX AC JX513895; XX DT 28-OCT-2012 (Rel. 114, Created) DT 28-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate GFV 3138-01 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3761 RA Rott M.E., Belton M., Saeed H.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-3761 RA Rott M.E., Belton M.; RT ; RL Submitted (21-AUG-2012) to the INSDC. RL Centre for Plant Health, Canadian Food Inspection Agency, Sidney RL Laboratory, 8801 East Saanich Rd, North Sanich, British Columbia V8L 1H3, RL Canada XX DR MD5; 7966bfa5be7025d490608b7fa142fc6a. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCBio Genomic Workbench v. 4.5 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3761 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera" FT /isolate="GFV 3138-01" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Sep-2010" FT /db_xref="taxon:12274" FT CDS 400..3549 FT /codon_start=1 FT /product="polyprotein" FT /note="contains conserved NeA_P2 and nepovirus coat protein FT domains" FT /db_xref="GOA:K4MYM3" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4MYM3" FT /protein_id="AFV34756.1" FT /translation="MFSYKIGSGPIDNPDMLDWQFVLTGKVSRRPPQPVKADEVVVVPH FT PVIPSPPPVPGPYFRPVGAFAPTRSGFIRATVERLSREREESRAAALFAELPLEYPQGA FT PLKLSLAMKFAMLKHTTWRKWYDTSDERLLEAHPGGPCLPPPPPIQSPPSFHERVREFC FT RMKSCARVFALETSSGLNKAWIGSINIPNTSVCCADGRTTGGQTIAQEADPLQHRVSTS FT VAPGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPP FT LRNAYAPRGLWRGPSTRANYTLDFRLNGIPTGINTLEILYNPVSEEEMEEYRDRGMSAV FT VIDALEIAINPFGMPGNPTDLTVVATYGHERNMSRAFIGSASTFLGNGLARAIFFPGLQ FT YSQEEPRRESIVRLYVASTNATVDADSILAAISVGTLRQHVGSMHYRTVASTVHQAQVQ FT GTTLRATMMGNTVVVSPEGSLVTGIPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIR FT SRSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMISD FT FKGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITSRITASADPVYTL FT SVPHWLIHHKLGTFSCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQAV FT VELYAELEEATSFLGKPTLVFDPGVFNGKFQFLTCPPIFFDLTAVTALKSAGLTLGQVP FT MVGTTKVYNLNSTLVSCVLGMGGTIRGKVHICAPIFYSIVLWVVSEWNGTTMDWNELFK FT YPGVYVEEDGSFEVKIRSPYHRTPAKLLAGQSQRDMSSLNFYAIAGPIAPSGETARLPI FT VVQIDEIVRPDLSIPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGENP FT LAAMIACHGLHSGVLDLKFQWSLNTEFGKSSGSVIVTKLVGDKAMGLDGPSQIFAIQKL FT EGVTDLLIGNFAGANPNSHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSFP FT V" XX SQ Sequence 3761 BP; 891 A; 787 C; 954 G; 1129 T; 0 other; aaaattctta cggtttctta cgttaccgtg atttcacttt ttccctgcca agagtttaag 60 aaactcaaaa gaaacactgc gaagagttta agaaactcac aaagcgaaga gtttaagaaa 120 ctcatcattg ctttttctgc ttttcacctt gcgctttatt tgtttagcat tttatttagt 180 tcttttaaaa agcttttgtt ttgtttttct ttcttttctg cccgtatggg caagttctat 240 tattccaaca ggcgtttagc ctgttgggct gctggtaaga accctcattt ggggggttct 300 gttgaataat ggctggcggc cattaatact gatccctcct tccgccaaac tgttaaggag 360 gatgtccagg aaaaccggac tgagccttcg gccatccgga tgttttccta caaaattggg 420 tcagggccca ttgacaaccc tgatatgctt gattggcagt ttgtccttac gggcaaggtg 480 tccaggcggc cgccccagcc ggttaaagct gatgaggttg tggtggtgcc acacccggtt 540 attccttcac cgccccctgt tccagggcct tattttaggc ctgttggggc ttttgcacca 600 acccggtccg ggtttattcg ggccactgtg gaaaggctct cccgtgaaag ggaagagtcg 660 agagctgcgg cactctttgc cgaattgcca ttggagtatc cacaaggtgc tcctttgaag 720 ttgagcctgg cgatgaaatt tgccatgctc aagcatacca cttggaggaa gtggtatgac 780 actagtgatg agcgcctttt ggaggctcat cctggtggtc cttgtcttcc tccccctccc 840 ccaatccaaa gccccccctc ttttcatgag agggtgaggg agttttgcag gatgaagtcc 900 tgcgccaggg tttttgcctt ggaaacctct tcaggtctga ataaggcctg gataggttca 960 ataaacatcc ccaacacttc tgtgtgttgt gcggatggga ggactaccgg tgggcaaaca 1020 attgctcaag aagctgatcc tttgcaacat agggtcagta cttctgtagc ccccggtagg 1080 gcacaatgga tctctgagcg caggcaagct ctgcgaagga gagagcaagc aaatagcttg 1140 cagggtcttg ctgctcaaac tgatatgact tttgagcagg ccaggaatgc ttatcttggt 1200 gctgctgaca tgattgagca aggcctaccg ttacttcctc ctctgcgcaa tgcttatgcc 1260 cctaggggtt tgtggagggg gccctcaacc agagccaatt acacgttaga ttttaggctc 1320 aatggtattc cgactgggat aaatacactg gaaatattgt ataatcccgt gtcggaagaa 1380 gagatggaag agtaccggga tagaggcatg tcggctgtgg tgatcgatgc gctagaaata 1440 gccataaatc cgttcggtat gcccggtaat ccgacggact taactgtcgt agcaacgtac 1500 gggcatgagc gtaacatgtc acgtgccttt attggttctg cctctacctt tcttggaaat 1560 ggtttggcac gagccatctt ctttcctggt ttgcaataca gtcaggaaga accgaggcgc 1620 gagtctatag ttcgcctata tgttgcttcc actaatgcca ctgtagacgc tgattcgatc 1680 ttggcagcca ttagtgttgg cactttgcgt caacatgttg gttccatgca ttatcggaca 1740 gtggcaagca ctgtgcacca ggcccaggtg caaggaacga cgctcagggc tactatgatg 1800 ggcaataccg ttgtagtttc acctgaagga agcctggtta ctgggatccc cgaggctaga 1860 gttgaaatag ggggtggttc tagtatcaga atggtgggac ctctgcaatg ggaaagtgtg 1920 gaggagccag ggcaaacctt ctctatcaga agtcgctcac ggtctgtgag gattgacaga 1980 aatgttgatc ttcctcagct tgaggctgag cctaggttga gctcaaccgt gagaggatta 2040 gctggaagag gcgtggttta tattcccaag gattgccagg caaacaggta cttgggcacc 2100 ctgaacatac gggatatgat ttcagatttt aagggtgtcc agtatgaaaa gtggataact 2160 gcaggattag tcatgcctac tttcaagata gttgttaggc tacctgcaaa tgccttcact 2220 ggactgacgt gggtgatgag ctttgatgct tataaccgga taactagtag aattactgct 2280 agtgcggatc ctgtatacac cctgtcagtc ccacattggc ttatccatca taagttgggc 2340 acgttttcat gtgaaataga ttatggagag ttgtgtggcc atgctatgtg gtttaagtcc 2400 acaacatttg aatctccaag gttacatttc acatgcttaa cggggaacaa caaagagttg 2460 gcggcagact ggcaagctgt cgttgaacta tatgctgaat tggaagaggc cacttctttt 2520 cttgggaaac caactctggt ttttgaccca ggtgttttca atggcaaatt tcagtttctt 2580 acttgccctc ccatattctt tgatctaaca gccgtcactg ctctcaagag tgctgggttg 2640 actttgggac aagtcccaat ggttggcact accaaggttt ataacctaaa cagtactctt 2700 gtgagttgtg ttctgggtat ggggggtact attagaggaa aggttcacat ttgcgcacca 2760 atcttctata gtattgtttt atgggttgtt agtgagtgga acgggaccac tatggattgg 2820 aatgaacttt tcaaatatcc cggggtgtat gtggaagaag atgggagttt tgaagtcaag 2880 attcgctctc catatcaccg aacacctgct aaattgcttg ctggtcaaag tcagagggac 2940 atgagctctc taaattttta tgcaatagca ggacccatcg ctccatcggg tgagaccgca 3000 cgacttccta tcgttgtaca aattgacgag attgtgcgcc ctgatctctc tataccgagc 3060 tttgaagatg attattttgt gtgggtggat ttttctgagt tcactctcga taaagaagaa 3120 attgagattg gttctcgttt cttcgatttt acttcaagca cctgtagagt gtctatggga 3180 gaaaacccgc tcgctgcaat gattgcttgt catggattgc atagtggtgt tttagacctc 3240 aaatttcaat ggagtctgaa cactgaattt ggcaagagca gtgggagcgt tattgttaca 3300 aagctggttg gtgataaagc catgggtctg gacggacctt ctcagatttt tgccatacaa 3360 aagctggaag gagttacaga tttgttgatt gggaattttg caggagcaaa tcccaactca 3420 catttctctc tctatagccg gtggatggca attaaactag atcaagcaaa gagtattaag 3480 gtactccggg tcttgtgcaa gcctcgtcca ggtttcagtt tttatggaag gaccagcttc 3540 cccgtctagg atgtttaatt ttagataatt taggtatatg cgtgtgtttt attaactgtg 3600 tgtattattt tgtgttgtag tttgctttga cttgtttact actgtagtgt gtttattttc 3660 atgcttttag tggcgacagt gtgttgtttg tcctttggac acacttgcct tgtcggacgc 3720 aaaaagattt tcttttcttt ttactgtttt gcaaattttt a 3761 //