ID JX513894; SV 1; linear; genomic RNA; STD; VRL; 7326 BP. XX AC JX513894; XX DT 28-OCT-2012 (Rel. 114, Created) DT 28-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate GFV 3138-01 segment RNA1 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7326 RA Rott M.E., Belton M., Saeed H.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-7326 RA Rott M.E., Belton M.; RT ; RL Submitted (21-AUG-2012) to the INSDC. RL Centre for Plant Health, Canadian Food Inspection Agency, Sidney RL Laboratory, 8801 East Saanich Rd, North Sanich, British Columbia V8L 1H3, RL Canada XX DR MD5; 9a359f9cf7a94fac54df8d50cc10c658. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCBio Genomic Workbench v. 4.5 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7326 FT /organism="Grapevine fanleaf virus" FT /segment="RNA1" FT /host="Vitis vinifera" FT /isolate="GFV 3138-01" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Sep-2010" FT /db_xref="taxon:12274" FT CDS 234..7088 FT /codon_start=1 FT /product="polyprotein" FT /note="contains conserved RNA helicase and RNA-dependent FT RNA polymerase domains" FT /db_xref="GOA:K4MVK7" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:K4MVK7" FT /protein_id="AFV34755.1" FT /translation="MWQVPEGSQCCCTGKSFSNAEAKELRYVCSCWMGTRLVKAEAPPQ FT QPKQSRMAPALPKSKGTVQVPSQEVVGAEPIDPESKGASVAPTPLLKQRCEVVVQYGPP FT VDIELVYPPLVREEEKSSKEKALPPAAKVEIRVPVCCAPKWMVATPKPPVKLAPKASKL FT RFPKGAVAYNGVNFIDTKGKVVLSEGAKRILKGIRVATKQRLRAARRSAACKRVRAARA FT LAKFEAIVQNERLDQLKTGFQVVLPAPKMSCSLEKAAPSTTPMVVVKKRKLVKLPKILP FT EQDFSCLEDFDWGEKSLPVEVDIEDDWVLVEKPVLMRQAAQTAQGRATEALTRFAATSG FT FSLGAHQRVEDFASLGEAEYVMAGEFADLCLLSLVYNDAPTLSATIEELKEIKDFLEAI FT ELLKLELAEIPTDSITCAPFRQWASAAKQMAKGVGTMVGDFTRAAGAAVIISFDMAVEF FT LQDKALKFCKRIFDVTMAPYLQHLASAHSILKKIWEKLSEWMESLKSKASLALEVMAQH FT AIFALGAMVIGGVVVLVEKVLIAAKIIPNCGIILGAFLTLFFASLGLTALECTAEEIFR FT MHACCKSAIYSMYSVEEPTMAGEGESHTMGATQGLDNAIQALTRVGQSMISFKLGSFSY FT YAKIAQGFDQLARGKRAIGELTSWLIDLVGSIYSQVSGQESTFFDELSTIVCLDVRAWL FT LKSKRVRLQVETMAIGDRITLDTIAKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSK FT LEEVHARTACAGINEGMRAFPFWVYIFGASQSGKTTIANSVIIPALLEEMNLPKSSVYS FT RPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYIHEKGMSMD FT SPLVVTTANTVVPPTNSQVVDLPSFYNRRAAVLEVRRKDGSFFAPRAYDSCIEVRFMHN FT KCPYVDSAGVPQGPSVNTPMDEGWITPSEAVAVLKNLLGEHILAEEEKLLEYRERIGND FT HPIYNAAKEFIGNMHYPGQWLTAEQKSTYGIKDDGFSFLAVDGKMYKYNVLGKLNPCES FT EPPHPNVIPWLEKKTLEIVHWDVHKHIATGPRNALVACFLQGLVQGQSKVESVERMGKD FT SSPEQQSFFKRLSLSERIYLRLCQIRIDNIQKEELAGSGRGPMAILRECLLKSKQVVVE FT NYSLLLTLVAILLLISAAYTLLSTVVALASCSSFAGGMVAVTAVNSASIPCSEPRLEER FT YSPRNRFVSRISKIRGEGPSKGQGEHEELVTELYYYCDGVKKLISTCWFKGRSLLMTRH FT QALAVPIGNEIEVIYADGTTKKLVWPGRQEDGNCKGFVEFPENELVVFEHPHLLTLPIK FT YEKYFVDDADRQISPNVAVKCCVARLEDGIPQFHFWNKYAMARSEVHTLKDEGGGNVYQ FT NKIRRYIVYSHEAKKYDCGALAVAVIQGIPKVIAMLVSGNRGVTYSSVIPNYSSSFVRG FT EVPYVPEDGLVTRGYRKVGYLHASDAPHVPSKTSFMKVPDELCFPYPDPKQPAILSAED FT ERLKGTIHEGYTPLRDGMRKFAEPMHLLEEKLLDEVAGDMVQTWYDPGEFLEDISLDQA FT INGDINEEYFDPLVMDTSEGYPDVLDRKPGEKGKARFFVGEPGNRVFVAGCNPEKAYFQ FT LDEDSKTKVPSLVSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLM FT KKRGHLPCQVGINPYSREWTDLYHRLGELSDTGYNCDYKAFDGLITEQILSTIADMINV FT GYRDPVGNRQRKNLLLAISGRLSICGNQVYATEAGIPSGCALTVVLNSIFNELLMRYCF FT KKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQYFTGDALKLQMAKLGVTITDGKDK FT SLSTIPARPLLELEFLKRGFMRSTGGLINAPLEKLSIMSSLIHIRSDGSDMLQKLLDNV FT NTALVELYLHGDRAYFESVRAFYMGKLPPGSYKELTTWFQAESFHECQKSGESGYKPQG FT LIEVSHGTAFASFTQQAGTELEKHDICPGLSIAGTKYIATEDEIVLSLSSILPGDRNVF FT KLDLPCGDGIGRLPSKGSILGLRKPGLVMRLCKRAQAEKKTLVIRDERPYIGAWAVACI FT CGESFGFGLQSVLTLYANLLGPNRRNGLASYFSDYESPIHVKRIHAKTNSLEGGEALKE FT VFTFCETTFYNATDMDTRKVMVQNQPDVYPSISLVGGICFPHAGEKPGALFVDDDMLKA FT EQTPGVYVSEACLKCCKRCLGFTTKTVSSTAAFKNSLLKTHLKTLRRVQTHSCSRR" XX SQ Sequence 7326 BP; 1942 A; 1430 C; 1889 G; 2065 T; 0 other; ccgtgggttc ttacgttatc gtgattacaa tctttctttg tgaagagttt aagaaactca 60 agattgcaat ctcttgcgaa gagtttaaga aactcagtcc gcgaagtgtt taagaaacac 120 attgttttgt tttgcctgca atttagtttt gtgcaaatta ctttaatatt acttgcttta 180 ctgtgttatt tatttaagtt tagttttgga atttttaaga gttgtttgcc actatgtggc 240 aggtgcccga gggctcccag tgttgttgca ctgggaagtc cttctcaaat gcggaggcta 300 aggaactccg ctacgtgtgc tcctgttgga tgggcacacg gttagttaag gctgaggcac 360 ctcctcagca accaaagcag agcaggatgg cgcctgctct cccaaaatcc aaaggaactg 420 tccaagttcc atcccaggag gttgttgggg ctgaacccat cgacccagaa tccaaaggag 480 cttctgtggc tccaacacct ttgctaaaac aaaggtgtga agtggtagtt caatacggcc 540 ctccggtcga tattgaattg gtatacccgc ctcttgtgcg ggaggaggag aaatcctcca 600 aggaaaaggc tctgccgcct gccgcaaagg tggaaattag ggtgccagtg tgctgtgcac 660 ccaagtggat ggtggccact ccaaaaccac cggtgaagct agcccctaaa gctagcaagc 720 tgcggttccc taaaggggct gtggcttata atggtgtcaa ttttattgac accaagggga 780 aagtcgtcct atctgagggc gcaaagagga tccttaaggg gatccgcgtt gctactaagc 840 aacgtcttcg tgctgcgcgc aggtctgctg cgtgtaagag ggtgagggcc gcgcgtgccc 900 tcgccaaatt tgaggcaatc gttcagaatg aacgattgga ccagttgaag actgggttcc 960 aagtggtgct tccggcacca aaaatgagct gcagcttaga gaaagctgct ccttctacca 1020 cccctatggt ggtagttaag aagaggaagc tggtaaagct tcctaaaatt ctgcctgagc 1080 aggacttctc ctgcttagaa gattttgact ggggggaaaa gtcccttcca gttgaggtgg 1140 acatcgagga cgactgggtc ctcgtggaaa aacctgtcct tatgagacag gctgcgcaaa 1200 ctgcgcaggg cagggcaacc gaggccttaa ctcggtttgc agctaccagt ggcttctcgc 1260 tgggtgccca ccaaagggtg gaggatttcg cttcactcgg tgaagcggaa tacgtgatgg 1320 caggagagtt tgcagacctt tgcttgctat ctttggtgta caatgatgcg ccaacgttgt 1380 ctgcaactat tgaggagctt aaagaaatta aagactttct tgaagctatt gagctcctca 1440 agttggaatt ggctgaaatt ccaacggact ccatcacatg tgctccattt agacaatggg 1500 cttctgctgc caagcagatg gccaaaggcg ttggcactat ggttggagat ttcactaggg 1560 ctgcaggagc tgctgtcatt atctcctttg acatggcagt ggaatttttg caagataaag 1620 cgttgaaatt ctgtaaaaga atttttgacg ttacaatggc tccctatttg cagcatcttg 1680 ccagtgcaca ttccatcctc aagaagatat gggaaaaatt gtcagaatgg atggaaagcc 1740 tcaagagtaa ggccagccta gcacttgaag tgatggcaca acatgccatt tttgctttgg 1800 gtgccatggt cataggagga gtggtagtgc ttgttgagaa agtgctgatt gcagccaaga 1860 ttatcccgaa ttgtgggatt attttgggag catttttgac actttttttt gccagcctag 1920 ggctgacagc cctggagtgc actgcagaag aaatcttcag aatgcatgcg tgttgtaaaa 1980 gcgctattta ctccatgtat tcagtcgaag aacccactat ggctggtgaa ggggagtccc 2040 acaccatggg ggcgactcag ggacttgata atgcaattca ggccctgact cgagtaggac 2100 agagtatgat aagctttaaa ttggggagct tttcatacta tgcaaaaata gcccaaggat 2160 ttgatcaact tgcaaggggc aagcgagcga taggcgaact tactagctgg ctcatagacc 2220 ttgttggaag tatttactcc caggtttctg gacaagaaag tactttcttt gatgagcttt 2280 ctacaattgt ttgtctagat gtgagagcat ggttgttgaa aagcaagcgt gttcgattgc 2340 aagttgagac gatggccata ggcgatagaa taaccttaga tactattgcc aaactgctag 2400 aagaaggcca caagatattg gttactgcag caggcgttcc gaggaaaacg tctgctgatt 2460 ttacaatgtg catcaaagag gaagtatcca agttggaaga agtacatgct agaacggcat 2520 gtgcaggaat caatgagggt atgagagctt ttcctttttg ggtgtacatt tttggtgctt 2580 cacagtctgg gaagacaacg attgcaaatt cagtcattat tccagctttg ctggaagaga 2640 tgaatcttcc caagagttct gtttattcca ggcccaagac tggtgggttt tggagtggtt 2700 atgccaggca agcgtgtgta aaggttgatg acttttacgc aattgagcaa acacctagct 2760 tggcgagttc catgattgat gtagtgaatt cagaacctta tccccttgat atggcttaca 2820 tccatgagaa gggaatgtca atggattctc cattagttgt aaccactgca aacaccgtcg 2880 tgcctcctac caattctcaa gtggtagatt tgccatcatt ttataacaga agggcagcgg 2940 tgctggaagt gagaaggaaa gatgggagtt tctttgcgcc aagggcatat gattcatgta 3000 ttgaagttcg cttcatgcat aataagtgtc catatgttga ctctgctgga gtgcctcagg 3060 gtccttcagt aaatactccc atggatgaag gatggattac tccaagtgag gctgttgcag 3120 tcctcaaaaa tctcttgggt gaacacatcc tggctgagga agaaaagctg ctggaatata 3180 gggagcggat tggcaatgac catcccatat ataatgcagc gaaggaattc ataggtaaca 3240 tgcactatcc tggacagtgg ttgaccgctg aacaaaaaag tacctatgga attaaggacg 3300 atggattctc tttccttgca gttgatggga aaatgtacaa gtacaacgtc ttgggaaagt 3360 tgaatccatg tgagtctgaa ccaccacacc ccaatgtgat tccgtggctg gaaaagaaaa 3420 cgttagaaat agtacattgg gatgtacaca aacatattgc cactggtccc cgcaatgcat 3480 tggttgcatg ttttctacag ggcttggtcc aaggacaaag taaggtagaa agcgtggaac 3540 gtatgggaaa agatagttct ccagagcaac agagtttttt taaacgtttg agtttatctg 3600 agagaattta tctgaggttg tgccagatcc gcattgacaa tatccagaag gaagagctgg 3660 caggatctgg tagagggcct atggcaatac tgagagaatg tttgttgaag agtaagcagg 3720 tagtagtgga aaactactca ttgttgttga cgctggtagc cattcttttg cttatcagcg 3780 ctgcttatac gctactctca acggtggtag ccctggcgag ttgctctagt tttgctggtg 3840 gtatggtcgc tgtgacagct gttaacagtg cttccatacc gtgttcagag ccgcgcctgg 3900 aggaaagata ttcccctagg aatcgttttg tctcacgtat ttccaagatt aggggtgagg 3960 ggccttctaa gggacaaggt gaacacgagg aattggttac tgagctctat tattattgtg 4020 atggggtcaa gaagctaatt tccacgtgct ggtttaaagg aaggtcgctc ctgatgacga 4080 gacaccaagc cctggctgtt ccgattggca acgaaattga agtaatatat gccgatggaa 4140 caacaaagaa gctggtctgg ccaggcagac aagaggatgg caactgcaaa ggcttcgtcg 4200 agtttcccga gaatgagtta gttgtctttg agcacccaca cttgttgaca ctacccatta 4260 aatacgagaa gtactttgta gatgatgccg atagacagat ttccccgaac gttgcggtta 4320 agtgttgtgt tgcgcgttta gaagatggaa ttccccaatt ccacttttgg aacaaatatg 4380 caatggcccg cagtgaagtt cataccctaa aggatgaggg tggaggaaat gtctaccaga 4440 acaagatacg acgctacatt gtctattcac atgaagcgaa gaagtatgac tgtggagcct 4500 tggccgtggc tgttatccaa ggaattccaa aggtcattgc aatgcttgtt tctggaaata 4560 gaggtgtgac ctattcttct gtaattccaa attatagttc ttccttcgtt aggggagaag 4620 taccatatgt accagaagat gggttagtga cgagaggata caggaaagtg ggctacttac 4680 atgcgtctga cgcaccgcat gtgccttcca agacttcttt tatgaaggtg ccagatgagt 4740 tgtgttttcc ttatcctgat cctaagcagc ctgccatcct cagtgccgaa gatgaacgcc 4800 taaaagggac aatccatgag ggctatactc cgttgaggga tggcatgagg aagtttgctg 4860 aacctatgca cttgcttgaa gagaaattac ttgatgaagt tgcgggtgat atggttcaaa 4920 cgtggtacga tccaggtgaa ttccttgaag atatttcttt agatcaggcc atcaatgggg 4980 acataaatga agaatatttt gatcccttgg tgatggacac gtctgaaggc tatcctgatg 5040 tcttggatcg caaacctggt gaaaagggga aggcgagatt ctttgttggg gaaccaggaa 5100 atagggtctt tgtggctggt tgtaatcctg aaaaggctta ttttcagcta gatgaagatt 5160 ccaagaccaa ggtgccttcc ttggtcagta tagaaacccc taaagatgag agactgaaga 5220 gaagcaaaat tgatactcct ggtacgagat tattttctgt gttgcccttg gcatataatc 5280 tcttattaag agtaaaattc ttgtctttct ctcgcctatt gatgaaaaag agaggtcacc 5340 tgccttgcca ggtaggcatc aatccttata gccgtgagtg gactgatttg taccatcgct 5400 tgggggaact ctccgacact gggtacaact gtgattacaa ggcctttgac ggtttaatta 5460 cagaacagat tttgagtact attgccgata tgatcaatgt tgggtaccgt gatcccgttg 5520 gtaataggca aaggaaaaat ttactcctgg ctataagtgg acgcctctct atttgtggaa 5580 atcaagtgta tgccactgaa gcaggcatac cttcaggatg tgccctcaca gtagtgctca 5640 attctatatt taatgagtta ctgatgaggt attgcttcaa gaagatagtt cctcccgtgt 5700 ataaggaatg ttttgacagg tgtgtcgtgc tcatcactta tggtgacgac aatgtcttca 5760 ctgttgcaca gtctgtcatg cagtatttta ctggcgatgc cttgaagttg cagatggcaa 5820 agctaggggt gactatcacg gatgggaagg ataagtctct ttccactatt ccagctcgtc 5880 cactgctgga attagaattt ttgaaacgtg gattcatgag aagcacggga gggctaataa 5940 acgctccttt ggagaaattg tcaataatga gttctttgat ccatattaga agcgatggtt 6000 ctgacatgtt gcagaaatta ttggataatg tcaatacagc acttgtcgaa ttatatctac 6060 atggtgatag agcttacttt gaatcagtcc gtgcttttta tatgggaaaa cttcctcctg 6120 gctcttacaa agagttaacg acgtggttcc aagcggaatc atttcatgag tgtcagaaga 6180 gtggggagag tggctacaag ccgcaggggc ttattgaagt tagtcatgga acagcttttg 6240 ccagtttcac ccaacaagct ggtacggagc tggagaaaca tgatatttgc cccggcttgt 6300 caattgcagg aactaagtat attgccactg aagatgagat tgttttgtca cttagttcca 6360 ttcttcccgg ggatagaaat gtcttcaaat tggatctgcc ttgtggggat gggatagggc 6420 gtttaccttc caaaggcagt atcttgggct taagaaaacc gggcttggtt atgaggttgt 6480 gcaagcgtgc ccaagctgaa aagaagacct tagtcattcg tgatgaaagg ccttatattg 6540 gtgcgtgggc agttgcttgc atatgtggcg agagttttgg cttcggatta cagagtgttc 6600 ttacacttta tgctaatttg ttgggaccaa accggaggaa tggcttggct agctattttt 6660 ctgattatga gagtcccatt catgtcaaga gaatccatgc taagacaaac tcccttgaag 6720 gaggcgaggc tttgaaggaa gtcttcactt tttgtgagac aactttttac aacgccaccg 6780 acatggacac taggaaggtg atggttcaaa atcaaccaga cgtctatcct agtatcagcc 6840 ttgttggggg aatctgcttt ccccatgctg gggagaaacc tggagcgtta tttgttgatg 6900 atgatatgct caaggcggag caaaccccgg gagtttatgt gagtgaagca tgtttaaagt 6960 gctgcaaaag gtgtctgggt tttaccacca agaccgtgag cagcactgcg gctttcaaga 7020 atagtctttt gaagacacat cttaagactc tgaggcgtgt tcaaactcac tcatgctcga 7080 ggaggtgatt cttccaattc ttggtactgg gataaccaag tttaaataac ccagtttcaa 7140 atgtttttca agctctttaa gacatttgaa tatcagagct tttgtgttat aatttgcttt 7200 aacttgttta ctgctttagt gtgtttattt tcatgctttt agtggcgaca gtgtgttgtt 7260 tgtcctttgg acacacttgc cttgtcggac gcaaaaagat tttctttttc tttttactgt 7320 tttgca 7326 //