ID JX513890; SV 1; linear; genomic RNA; STD; VRL; 3760 BP. XX AC JX513890; XX DT 28-OCT-2012 (Rel. 114, Created) DT 28-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate GFV 1050-02 segment RNA2 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-3760 RA Rott M.E., Belton M., Saeed H.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-3760 RA Rott M.E., Belton M., Saeed H.; RT ; RL Submitted (21-AUG-2012) to the INSDC. RL Centre for Plant Health, Canadian Food Inspection Agency, Sidney RL Laboratory, 8801 East Saanich Rd, North Sanich, British Columbia V8L 1H3, RL Canada XX DR MD5; 9ce4634482def7827890a078a55327ac. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCBio Genomic Workbench v. 4.5 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3760 FT /organism="Grapevine fanleaf virus" FT /segment="RNA2" FT /host="Vitis vinifera" FT /isolate="GFV 1050-02" FT /mol_type="genomic RNA" FT /country="Canada" FT /collection_date="Sep-2010" FT /db_xref="taxon:12274" FT 5'UTR <1..225 FT variation 198 FT /replace="g" FT CDS 226..3549 FT /codon_start=1 FT /product="polyprotein" FT /note="contains homing protein (2A), movement protein (2B) FT and coat protein (2C)" FT /db_xref="GOA:K4MW96" FT /db_xref="InterPro:IPR005054" FT /db_xref="InterPro:IPR005305" FT /db_xref="InterPro:IPR005306" FT /db_xref="InterPro:IPR021081" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4MW96" FT /protein_id="AFV34732.1" FT /translation="MGKFYYSNRRLACWAAGKNPHLGGSVESWLAAINSDPSFRQTVKE FT DVQENRTEPSAIRMFSWKIGSGPIDNPDMLDWQFVLTGKVSRQPTGPAKAQEVVVPPVK FT VIPSPPPVPGPYFRPIGAFAPTRSGFIRATVERLTREREESRAAALFAELPLEYPQGAP FT LKLSLAMKFAMLKHTTWRKWYDASDERLLEAHPGGPCLPPPPPIQSPPSFCERVREFCR FT MKSCARVFALETSSGLNKAWIGSINIPSTSVCCADGRTTGGQTIAQEADPLQHRVSTSV FT APGRAQWISERRQALRRREQANSLQGLAAQTDMTFEQARNAYLGAADMIEQGLPLLPPL FT RSAYAPRGLWRGPSTRANYTLDFRLNGIPTGTNTLEILYNPVSEEEMEEYRDRGMSAVV FT IDALEIAINPFGMPGNPTDLTVVATYGHERNMTRAFIGSASTFLGNGLARAIFFPGLQY FT SQEEPRRESIVRLYVASTNATVDADSILAAISVGTLRQHVGSMHYRTVANTVHQAQVQG FT TTLRATMMGNTVVVSPEGSLVTGIPEARVEIGGGSSIRMVGPLQWESVEEPGQTFSIRS FT RSRSVRIDRNVDLPQLEAEPRLSSTVRGLAGRGVVYIPKDCQANRYLGTLNIRDMILDF FT KGVQYEKWITAGLVMPTFKIVVRLPANAFTGLTWVMSFDAYNRITGRIAASADPIYTLS FT VPHWLIHHKLGTFTCEIDYGELCGHAMWFKSTTFESPRLHFTCLTGNNKELAADWQAVV FT ELYAELEEATSFLGKPTLVFDPGVFDGKFQFLTCPPIFFDLTAVTALKSAGLTLGQVPM FT VGTTKVYNLNSTLVSCVLGMGGTIRGRVHICAPIFYSIVLWVVSEWNGTTMDWNELFKY FT PGVYVEEDGSFEVKIRSPYHRTPAKLLAGQSQRDMSSLNFYAIAGPIAPSGETARLPIV FT VQIDEIVRPDFSLPSFEDDYFVWVDFSEFTLDKEEIEIGSRFFDFTSSTCRVSMGENPF FT AAMIACHGLHSGVLDLKLQWSLNTEFGKSSGSVTVTKLVGDKAMGLDGPSQIFAIQKLE FT GVTDLLIGNFAGANPNSHFSLYSRWMAIKLDQAKSIKVLRVLCKPRPGFSFYGRTSFPV FT " FT variation 276 FT /replace="a" FT variation 1008 FT /replace="t" FT variation 1488 FT /replace="t" FT variation 1593 FT /replace="a" FT variation 1758 FT /replace="c" FT variation 2184 FT /replace="t" FT variation 2217 FT /replace="t" FT variation 2277 FT /replace="c" FT variation 2430 FT /replace="c" FT variation 2757 FT /replace="a" FT variation 2973 FT /replace="g" FT variation 3033 FT /replace="c" FT 3'UTR 3550..3760 FT variation 3582 FT /replace="a" FT variation 3629 FT /replace="a" FT variation 3641 FT /replace="g" FT variation 3644 FT /replace="t" FT variation 3677 FT /replace="t" FT variation 3709 FT /replace="t" FT variation 3710 FT /replace="c" FT variation 3719 FT /replace="g" XX SQ Sequence 3760 BP; 905 A; 785 C; 957 G; 1113 T; 0 other; aaaattctta cggtttctta cgttaccgtg aagttacttt cctcaagcca agagtttaag 60 aaactcaaaa gaaacactgc gaagagttta agaaactcac aaagcgaaga gtttaagaaa 120 ctcatcattg ctttttctgc ttttcacctt gcgctttatt tgtttagtat tttgttaagt 180 tgttttaaaa agcttttatt ttgtttttct ttcttttctg cccgtatggg caagttctat 240 tattccaaca ggcgtttagc ctgttgggct gctggtaaga accctcattt ggggggttct 300 gttgaatcat ggctggcggc cataaattct gatccctcct tccgccaaac tgttaaggag 360 gatgtccagg aaaaccggac tgagccttcg gccatccgga tgttttcctg gaaaattggg 420 tcagggccca ttgacaaccc tgatatgctt gattggcagt ttgtccttac gggcaaggtg 480 tccaggcagc cgaccgggcc ggctaaagcc caagaggtgg tggtgccacc tgtgaaggtt 540 attccttcac cgccccctgt tccagggcct tattttaggc ctattggggc ttttgcacca 600 acccggtccg ggtttattcg ggccactgtg gaaagactca cccgggaacg ggaagagtcg 660 agagctgcgg cactctttgc cgaattgcca ttggagtatc ctcagggtgc tcctttgaag 720 ttgagcctgg cgatgaaatt cgccatgctc aaacatacca cttggaggaa gtggtatgat 780 gccagtgatg agcgcctctt ggaggctcat cctggcggtc cttgtcttcc tcctcctccc 840 ccaatccaaa gtccgccctc tttttgtgag agggtgaggg agttttgcag gatgaagtcc 900 tgcgccaggg tttttgcctt ggaaacctct tcaggtctga ataaggcctg gataggttca 960 ataaacatcc ccagcacttc tgtgtgctgt gcggatggaa ggactaccgg tgggcaaaca 1020 attgctcaag aagctgatcc tttgcaacat agggtcagta cttctgtagc ccccggtagg 1080 gcacaatgga tctctgagcg caggcaagct ctgcgaagga gagagcaagc aaatagcttg 1140 cagggtcttg ctgctcaaac tgacatgact tttgagcagg ccaggaatgc ttatcttggt 1200 gctgctgata tgattgagca aggcctgccg ctgcttcccc ctctgcgcag cgcttatgcc 1260 cctaggggct tgtggagggg accctcaacc agagccaatt atacattaga ttttaggctc 1320 aatggtattc cgactgggac aaacacattg gaaatattgt ataatcctgt gtcggaagaa 1380 gagatggaag aataccggga taggggtatg tcagccgtgg tgatcgatgc gctagaaata 1440 gccataaatc cgtttggcat gcccgggaat ccaacggatt tgaccgtcgt agcaacatat 1500 gggcatgagc gcaatatgac acgtgccttt attggatctg cttccacgtt cttagggaat 1560 gggttagcta gagccatttt ttttcctggc ttgcaatata gtcaggaaga accaaggcgc 1620 gaatctatag ttcgcctata tgttgcttcc actaatgcca ctgtagacgc tgattcgatc 1680 ttggcagcca ttagtgttgg cactttgcgc caacacgttg gttccatgca ctatcgtaca 1740 gtggctaata ccgtgcatca agcccaggtg caaggaacga cactcagggc tactatgatg 1800 ggtaatactg ttgtagtgtc acctgaagga agcctggtta ctgggatccc cgaggctaga 1860 gtcgaaatag ggggtggttc tagtatcaga atggtggggc ctctgcaatg ggagagtgta 1920 gaggaaccag ggcaaacctt ctctatcaga agtcgttcac gatctgtgag gattgataga 1980 aatgttgatc ttcctcaact tgaggctgag cccagattga gctcaaccgt gagaggatta 2040 gctggtagag gagtggttta tattcccaag gattgccagg caaataggta cttgggcacc 2100 ctgaacatac gtgatatgat tttagatttc aagggtgtcc agtatgaaaa gtggataact 2160 gcaggattag tcatgcctac tttcaagata gttgttaggc tacctgcaaa tgctttcact 2220 ggattgacgt gggtgatgag ctttgatgct tataaccgga taactggtag aattgctgct 2280 agtgcagatc ccatatatac cctgtcagtc ccacattggc ttatccacca caagttgggt 2340 acgtttacat gtgaaataga ctatggagaa ttgtgtggcc atgccatgtg gtttaagtcc 2400 acaacatttg aatctccaag actacatttt acgtgcttaa cgggcaacaa caaagagctg 2460 gcggcagact ggcaagctgt cgttgagctg tatgccgaat tggaagaggc tacctctttt 2520 cttgggaaac caactctggt ctttgacccg ggtgtttttg atggtaaatt ccaatttctt 2580 acttgccctc ccatattctt tgatctaaca gccgtcacgg ctcttaagag tgctgggctg 2640 acattaggac aagtcccaat ggttggcact accaaggttt ataacctaaa cagtactctt 2700 gtgagttgtg ttttgggtat gggaggtact attagaggaa gggtacatat ctgcgcgcca 2760 atcttctata gtattgtctt atgggttgtt agtgagtgga acgggaccac tatggattgg 2820 aatgaacttt tcaaatatcc cggggtgtat gtggaagaag atgggagttt tgaagtcaag 2880 attcgctctc catatcaccg aacacctgct aaattgcttg ctggtcaaag tcagagggac 2940 atgagttctc taaatttcta cgcaatagca ggacccatcg ctccatcggg tgaaaccgca 3000 cgacttccta tcgttgtaca aattgacgag attgtgcgcc cagatttctc tttaccaagt 3060 tttgaagatg attactttgt gtgggtggat ttttctgagt tcactctcga taaggaagaa 3120 attgagatcg gttctcgttt cttcgatttc acttcaagta cttgtagagt gtctatggga 3180 gaaaacccgt tcgctgcaat gattgcttgt catggattgc atagtggtgt tttggacctc 3240 aagctccaat ggagtctgaa taccgagttt ggcaagagca gtgggagcgt tactgttacg 3300 aagctggtgg gtgataaagc catgggtctg gacggacctt ctcagatttt tgccatacaa 3360 aagctggaag gagttacaga tttgttgatt gggaattttg caggagcaaa tcccaactca 3420 catttctctc tctatagccg atggatggca attaaattgg accaagcaaa gagtattaaa 3480 gtactccgtg tcttgtgcaa gcctcgtcca ggtttcagtt tttatggaag gaccagcttc 3540 cccgtctagg atgtttaatt ttagataatt taggtatatg cgtgtgtttt attaactgtg 3600 tgtattattt tgtgttgtag tttgctttga cttgtttact actgtagtgt gtttattttc 3660 atgcttttag tggcgacagt gtgttgtttg tcctttggac acacttgcct tgttggacac 3720 aaaaagattt tcttttcttt ttactgtttt gcaaattttt 3760 //