ID JX513889; SV 1; linear; genomic RNA; STD; VRL; 7340 BP. XX AC JX513889; XX DT 28-OCT-2012 (Rel. 114, Created) DT 28-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Grapevine fanleaf virus isolate GFV 1050-02 segment RNA1 polyprotein gene, DE complete cds. XX KW . XX OS Grapevine fanleaf virus OC Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus. XX RN [1] RP 1-7340 RA Rott M.E., Belton M., Saeed H.; RT "Detection of grapevine and tree fruit viruses by next generation RT sequencing"; RL Unpublished. XX RN [2] RP 1-7340 RA Rott M.E., Belton M.; RT ; RL Submitted (21-AUG-2012) to the INSDC. RL Centre for Plant Health, Canadian Food Inspection Agency, Sidney RL Laboratory, 8801 East Saanich Rd, North Sanich, British Columbia V8L 1H3, RL Canada XX DR MD5; a458b2ec6e5233c1f53e36b25b9ae225. XX CC ##Assembly-Data-START## CC Assembly Method :: CLCBio Genomic Workbench v. 4.5 CC Sequencing Technology :: Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7340 FT /organism="Grapevine fanleaf virus" FT /segment="RNA1" FT /host="Vitis vinifera" FT /isolate="GFV 1050-02" FT /mol_type="genomic RNA" FT /country="Canada" FT /collection_date="Sep-2010" FT /db_xref="taxon:12274" FT CDS 243..7097 FT /codon_start=1 FT /product="polyprotein" FT /note="contains protease cofactor, NTP-binding domain, VPg, FT protease and RNA-dependent RNA polymerase" FT /db_xref="GOA:K4MYK8" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR014759" FT /db_xref="UniProtKB/TrEMBL:K4MYK8" FT /protein_id="AFV34731.1" FT /translation="MWQVPEGSQCCCTGKSFSNAEAKELRYVCSCWMGTRLVKAEAPPQ FT QSRKSGIAPTPLKSKGTAQVPFPKAAGVEPSIQKSKGASVAPTPLLKQRCEVVVQYGPP FT ADIELVYPPLVREEEKSSGKVVLPPTPKVEVRVPVCCAPKWMVAIPKPPVKLAPKANKL FT RFPKGAVAYNGVNFIDAKGKVVLSEGAKRILRGIRVAAKQRSRAARRSAACKKVRAARA FT LAKFEAIVLNARLDQLKTGFQVVLPAPKMGCSLKEAAPSTTSAVVVKKRKPVKLPRVLP FT EQDFSCLDDFDWGEKSHPVEVDIEDDWVLVEKPVLKRQAAQTVQGRATEALTRFAATSG FT FSLGAHQKVEDFASLGEVEYLMAGEFADLCLLSLVYNDAPTLSATIEELRDSKDFQEAI FT ELLKLELAEIPTDSTTCAPFKQWASAAKQMAKGVGTMVGDFTRAAGAAVIISFDMAVEF FT LQDKALKFCKRIFDVTMAPYLQHLASAHSILKKIWEKLSEWMESLKSKASLALEVMAQH FT AIFALGAMVIGGVVVLVEKVLIAAKIIPNCGIILGAFLTLFFASLGLTALECTAEEIFR FT MHACCKSAIYSMYSVEEPTIVGEGESHTMGATQGLDNAIQALTRVGQSMISFKLGSFSY FT YAKIAQGFDQLARGKRAIGELTSWLIDLVGSIYSQVSGQESTFFDELSTIVCLDVRAWL FT LKSKRVRLQVETMAIGDRITLDTIAKLLEEGHKILVTAAGVPRKTSADFTMCIKEEVSK FT LEEVHARTECAGINEGMRAFPFWVYIFGASQSGKTTIANSVIIPALLEEMNLPKSSVYS FT RPKTGGFWSGYARQACVKVDDFYAIEQTPSLASSMIDVVNSEPYPLDMAYIHEKGMSMD FT SPLVVTTANTVVPPTNSQVVDLPSFYNRRAAVLEVRRKDGSFFTPRAYDSCIEVRFMHN FT KCPYVDSAGVPQGPAVNTPMDEGWITPSEAVAVLKNLLGEHILAEEEKLLEYRERIGND FT HPIYNAAKEFIGNMHYPGQWLTAEQKNTYGIKDDGFSFLAVDGRMYKYNVLGKLNPCES FT VPPHPNVVPWLEKKTLEIVHWDVHKHIATGPRNALVACFLQGLVQGQSKVESVERMGKD FT SSPEQQNFFKRLSLSERIYLRLCQIRIDNIQKEELVGSGRGPMAILRECLLKSKQVVVE FT NYSLLLTLVAILLLISAAYTLLSTVVALASCSSFAGGVVAVTAVNNASIPCSEPRLEER FT YSPRNRFVSRISKIRGEGPSKGQGEHEELVTELYYFCDGVKKLISTCWFKGRSLLMTRH FT QALAVPIGNEIEVIYADGTIKKLVWPGRQEDGNCKGFVEFPENELVVFEHPHLLTLPIK FT YEKFFVDDADRQISPNVAVKCCVARLEDGIPQFHFWNKYATARSEVHTLKDEGGGNVYQ FT NKIRRYIVYAHEAKKYDCGALAVAVIQGIPKVIAMLVSGNRGVTYSSVIPNYSSSFVRG FT EVPYVPEDGLVTRGYRKAGYLRASDAPHVPSRTSFMKVPDELCFPYPDPKQPAILSAED FT ERLKGTIHEGYTPLKDGMRKFAEPMHLLEEKLLDEVAGDMVQTWYDPGEFLEDISLDQA FT INGDVDEEYFDPLVMDTSEGYPDVLDRKPGEKGKARFFVGEPGNRIFVAGCNPEKAYYQ FT LDEDSKTKVPSLVSIETPKDERLKRSKIDTPGTRLFSVLPLAYNLLLRVKFLSFSRLLM FT KKRGHLPCQVGINPYSREWTDLYHRLGELSDIGYNCDYKAFDGLITDQILSTIADMINA FT GYRDPVGNRQRKNLLLAISGRLSICGNQVYATEAGIPSGCALTVVLNSIFNELLMRYCF FT KKIVPPVYKECFDRCVVLITYGDDNVFTVAQSVMQHFTGDALKLQMAKLGVTITDGKDK FT SLSTIPARPLLELEFLKRGFVRSSGGMINAPLEKLSIMSSLIHIRSDGSDMLQKLLDNV FT NTALVELYLHGDRAYFESVRAFYMEKLPPGAYKELTTWFQAESFHECQKSGESGYKPQG FT LIEISHGTAFASFTQQAGTELEKHDICPGLSIAGTKYIAAENEIVLSLSSILPGDRNVF FT KLDLPCGDGIGRLPSKSSILNLRKPGLVMKLCKRAQVEKKTLVIRDERPYIGAWAVACI FT CGESFGFGLQSVLTLYANLLGPNQKNGLASYFSDFESPICIKKVHAKTNSHEGDEALKE FT VFAFCENTLYSATDTDTRKVMIQNQPDAYPSISLVGGVCFPNDGGEPGALFSSDDVLKA FT GHTPGVYVSEACLRCCSRCVGYATKTVSSTTAFKSSLLKTHLKTLRRVQTHMCSRK" XX SQ Sequence 7340 BP; 1969 A; 1419 C; 1869 G; 2083 T; 0 other; atgaaaaatt ttcataagtt cttacgttac cgtgattgca atctttcttt gcgaagagtt 60 tgagaaactc aagattgaaa tcttttgcga agagtttaag aaactcacct cctgaagtgt 120 ttaagaaaca cgccatttca ttgcacttgt tacctatttt gtgctcatta cttttagatt 180 acatactttg ctgtgttatt tgtttaagtt tagttttgtt gtcgtaagag ttgattgcca 240 ctatgtggca ggtccctgag ggttcccagt gctgctgcac tgggaagtcc ttttcaaatg 300 cggaggccaa ggaactccgc tacgtgtgct catgttggat gggcacacgt cttgttaagg 360 ctgaggcacc tcctcagcaa tcaaggaaga gtgggatagc gcccactccc ctaaaatcca 420 aagggactgc tcaggtccca ttcccaaagg ctgctggggt tgagcccagc atccaaaaat 480 ccaaaggagc ttctgtggct ccgacacctt tgcttaagca aaggtgtgaa gtggttgttc 540 aatacggtcc tccggccgat attgaactag tttatccgcc tcttgtgcgg gaggaggaga 600 aatcctccgg caaagtggtt ctgccaccta ccccaaaggt ggaagtgagg gtgccggttt 660 gctgtgcacc caagtggatg gtggctatcc ctaaaccacc ggtgaagtta gcccctaaag 720 ctaacaagtt gcggttccct aaaggagccg tggcttacaa tggtgtcaat tttattgacg 780 ccaagggaaa agtcgtccta tctgagggcg caaagaggat ccttaggggg atccgcgttg 840 ctgctaagca acgttctcgg gctgcgcgca gatctgctgc gtgcaagaag gtgagagccg 900 cgcgtgctct tgccaaattt gaggcaatcg tgcttaatgc acgattggac cagttgaaga 960 ctgggtttca agtggtgctt ccggcaccaa aaatgggctg cagcttaaag gaagctgctc 1020 cttctaccac ctctgcggtg gtagttaaga agaggaagcc agtaaagctt cctagagttc 1080 tgcctgagca ggatttttcc tgcttagatg actttgactg gggggagaag tcccacccag 1140 ttgaggtgga catcgaggac gattgggtcc tcgtggaaaa acctgtcctt aagagacagg 1200 ctgcacaaac tgtgcagggc agggcaaccg aggccttaac tcggtttgca gctaccagtg 1260 gcttttcact gggtgcccac caaaaggtgg aagatttcgc ttcacttggt gaagtggaat 1320 acttgatggc aggagagttt gcagacctct gtttgctatc gttggtgtat aatgatgcac 1380 cgacactgtc tgcaactatt gaggagctta gggatagcaa agatttccag gaagctattg 1440 aactcctcaa gttggaatta gctgaaattc caacagactc caccacatgt gccccattta 1500 aacaatgggc ctctgctgct aagcagatgg ctaaaggagt tggcactatg gttggggact 1560 ttaccagagc tgctggggct gctgtcatta tttcttttga tatggcagta gagttcttgc 1620 aagataaggc gttaaagttc tgtaaaagaa tctttgacgt aacgatggcc ccatatctgc 1680 agcatcttgc cagtgcacac tccatcctta agaagatatg ggaaaaattg tcagaatgga 1740 tggagagcct caagagcaaa gctagcttgg cacttgaagt aatggcacag catgccatat 1800 ttgctttggg cgctatggtt atagggggcg tggtagtgct ggtggaaaaa gtgcttattg 1860 cagccaaaat tatcccaaac tgcgggatta ttttgggtgc ttttttgacg cttttttttg 1920 ccagcctagg gttgacagcc ctggaatgta ccgcagaaga aatcttcaga atgcatgcat 1980 gttgtaaaag tgctatttac tccatgtatt ctgttgaaga gcctactata gttggtgaag 2040 gagaatctca cactatgggg gcgactcagg gacttgacaa tgcaattcag gccctgactc 2100 gggtaggaca gagtatgata agctttaaac tggggagctt ttcatattat gcaaagatag 2160 cccagggatt tgatcaactt gcaagaggta agcgagcaat aggtgaactt actagttggc 2220 tcatagatct tgttggaagt atttactccc aggtttctgg acaggaaagt actttctttg 2280 atgagctttc tacaattgtt tgcctagacg taagggcgtg gctgctaaaa agtaagcgcg 2340 ttcggttgca agttgaaacg atggccatag gcgatagaat aaccttggat actattgcca 2400 aactgttaga agaaggccat aagatactgg ttactgcggc gggcgttcca aggaaaacgt 2460 ctgctgactt tacaatgtgc atcaaagagg aagtatccaa gttggaagaa gtacatgcta 2520 gaacagagtg tgcaggaatc aatgagggta tgagagcttt tcctttttgg gtgtacatct 2580 ttggtgcttc acagtctggg aagacaacta ttgcaaattc agtcattatt ccagctttgc 2640 tggaagagat gaatcttccc aagagctcag tttattccag gcccaagact ggtgggtttt 2700 ggagtggtta tgccaggcaa gcgtgtgtga aggttgacga tttttatgca attgagcaaa 2760 cacctagctt ggcgagttct atgattgatg tggtgaattc agagccttac cctctcgaca 2820 tggcttacat ccatgagaag ggaatgtcaa tggattctcc actagttgtg accactgcaa 2880 acactgttgt gcctcctacc aattctcaag tggtggattt gccatcattt tataatagga 2940 gggcagcggt gctggaagtg agaaggaaag atgggagttt ttttacgcca agggcatatg 3000 actcatgcat tgaagttcgc tttatgcata acaagtgtcc atatgttgat tctgcaggag 3060 tgcctcaggg tcccgcagta aacactccca tggatgaagg atggatcact ccaagtgagg 3120 ccgtagcagt cctcaaaaat ctcttgggtg aacacatctt ggctgaggaa gaaaagctgc 3180 tggaatatag agagcggatt ggtaatgacc atcccatata caatgcagca aaagaattca 3240 taggtaacat gcactatccc gggcagtggc tgactgctga acaaaagaat acctatggaa 3300 ttaaggacga tggattctct ttccttgctg ttgatggaag aatgtataaa tacaatgttt 3360 tgggaaagtt gaatccatgt gaatctgtac caccacatcc caatgtagtc ccatggctgg 3420 aaaagaaaac attggaaata gtacattggg atgtgcataa gcatattgcc actggtcccc 3480 gcaatgcact ggttgcatgc tttctgcagg gcttggtcca aggacaaagc aaggtggaga 3540 gtgtggaacg catgggaaaa gatagttctc cggagcaaca gaatttcttt aaacgcttga 3600 gtttatctga gagaatttat ctgaggttat gccagatccg cattgacaat atccagaaag 3660 aagagctggt gggatctggt agaggaccta tggcaatatt gagagaatgc ctgctgaaga 3720 gtaagcaagt agtggtggaa aactactcgt tattgttaac gttggtagct attcttctgc 3780 ttatcagtgc tgcctatacg ctactctcaa cagtggtggc ccttgcgagt tgctcaagct 3840 ttgctggtgg tgtggttgct gtgacagctg tcaataatgc ttccatacca tgttcagagc 3900 ctcgtttgga ggaaagatat tcccctagga atcgttttgt ctcgcgtatt tccaaaatta 3960 ggggtgaggg gccttctaag ggacaaggag agcatgagga attggttact gagctctatt 4020 atttttgtga tggggttaag aagttgattt ccacatgctg gtttaaggga aggtcgctct 4080 tgatgacgag acatcaagcc ctggctgttc caattggcaa tgaaattgaa gtgatatatg 4140 ccgatggaac aataaagaag ttggtctggc caggcagaca ggaagacggc aattgcaaag 4200 gcttcgttga gtttcctgag aatgagttag ttgtcttcga gcatccacac ttgttgacgc 4260 tacccattaa atatgagaag ttctttgtag atgacgccga cagacaaatt tctcccaatg 4320 ttgcggttaa atgttgtgtt gcgcgtctgg aagatggaat tccccaattc catttttgga 4380 acaaatatgc aacggcccgc agtgaggttc acaccctaaa agacgagggc gggggaaatg 4440 tctaccagaa caagataagg cgctatattg tatatgcaca tgaagcgaag aaatatgatt 4500 gtggagcctt ggctgtggct gtgatccaag gaattccaaa agtcatcgca atgcttgtgt 4560 ctgggaatag aggcgtaacc tattcttctg taattccaaa ttacagttct tcctttgtta 4620 ggggagaagt accatatgta ccagaagatg ggttggtgac tagaggatat aggaaagcgg 4680 gttacttgcg tgcatctgat gcaccacatg tgccttctag gacttctttt atgaaggtgc 4740 cagacgaact gtgctttcca tatcccgatc ctaagcagcc tgccattctt agtgctgaag 4800 atgaacgcct gaagggaaca atccatgaag gctatacacc gttgaaggat ggcatgcgaa 4860 agtttgctga gccaatgcac ttgctagagg agaaactgct tgatgaagtt gcaggtgaca 4920 tggttcagac atggtatgat ccaggcgaat ttcttgaaga tatttcttta gatcaggcca 4980 tcaatgggga cgtggatgaa gaatattttg atcccttagt gatggatacg tctgaaggat 5040 atcctgatgt cttagatcgc aaacccggag aaaaaggaaa ggcgagattc tttgtcgggg 5100 aaccagggaa tagaatcttt gtggctggct gcaatcctga aaaggcctac taccagctag 5160 atgaggattc taaaaccaag gtgccttcct tggttagtat agaaacccca aaagatgaga 5220 gactgaagag aagtaaaatt gatactcctg gtacgagatt gttttctgtg ttgcctttgg 5280 catataatct cttactaaga gtaaaattct tgtctttctc tcgcctactg atgaagaaga 5340 gaggccatct gccttgccag gtaggcatca atccctatag tcgtgaatgg accgatttgt 5400 atcaccgttt aggtgaactt tctgatatcg ggtacaattg cgattataag gcttttgatg 5460 gcctaatcac ggaccaaatt ttgagtacta ttgccgatat gatcaatgct ggataccgtg 5520 atcctgttgg caataggcag aggaaaaatt tgctcctggc aataagtgga cgcctctcca 5580 tctgtggaaa tcaagtgtat gccactgaag caggcatacc ttcaggatgt gctctcacag 5640 tagtgcttaa ttccattttt aatgaactac tgatgagata ttgcttcaag aagatagttc 5700 cccctgtgta caaggaatgt tttgacagat gtgttgtgct tattacttat ggtgatgaca 5760 atgtttttac tgtggcacag tctgttatgc aacattttac tggcgatgcc ttaaagttgc 5820 agatggcaaa gttgggggta actatcactg atgggaaaga taagtctctt tccactattc 5880 cagctcgtcc actgttggaa ttggaattct tgaaacgtgg atttgtaaga agctctgggg 5940 gtatgataaa tgccccctta gaaaaattgt caataatgag ttctttgatc catattagaa 6000 gtgatggttc agacatgttg cagaaattgt tggataatgt taataccgca cttgtcgagc 6060 tatatctaca tggtgataga gcttattttg aatcagttag agctttttac atggagaaac 6120 tccctcctgg tgcttataag gagctgacaa cgtggtttca agcagaatca ttccatgagt 6180 gccagaagag tggagagagt ggctataaac cgcaggggct cattgaaatt agtcatggaa 6240 cagcctttgc cagttttact caacaagctg gcacagagtt ggaaaaacat gacatttgcc 6300 ctggcttgtc gatcgcggga actaagtaca ttgctgctga gaatgagatt gttttatcac 6360 ttagttccat cttacccgga gatagaaatg tcttcaaact ggatctgcca tgtggagatg 6420 gaatagggcg cttgccctcc aaaagcagta tcttgaactt aagaaaaccg ggcttggtta 6480 tgaaactatg caagcgtgcc caggttgaaa agaagacctt agtcattcgt gacgaaaggc 6540 cttacattgg cgcgtgggca gttgcttgca tatgtggaga aagttttggc tttggactac 6600 agagtgttct tacactctat gctaatttgt tgggaccaaa tcagaagaat ggcttggcta 6660 gctatttttc tgattttgag agtcccattt gtattaagaa agtccatgcc aaaacaaact 6720 cccatgaagg tgatgaagct ttgaaggagg ttttcgcttt ttgtgaaaat accctttata 6780 gcgccaccga tacagatact aggaaggtaa tgattcaaaa tcaacctgac gcctatccta 6840 gtatcagcct tgttggggga gtttgctttc ccaatgatgg aggagaacct ggagcccttt 6900 tctccagcga tgatgttctt aaagcggggc acacacctgg ggtttacgtg agtgaagcgt 6960 gtttaaggtg ctgttcgagg tgtgtgggtt atgccaccaa aactgtgagc agtactacag 7020 cttttaagag tagtcttttg aagacacatc ttaaaactct aagacgtgtc caaactcata 7080 tgtgttcgag gaagtgatcc tcccaattct tggtactggg ataaccaagt ttaaataacc 7140 cagtttcaaa tgcttttcaa gctctttcag gcatttgaat attagagctt ttgtgttata 7200 gtttgcttta acttgtttac tgctttagtg tgtttatttt catgctttta gtggcgacag 7260 tgtgttgttt gtcctttgga cacacttgcc ctgttggacg caaaaagatt ttcttttctt 7320 tttactgttt tgcaaatttt 7340 //