ID   JX513406; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   JX513406;
XX
DT   28-OCT-2012 (Rel. 114, Created)
DT   28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Garlic latent virus isolate GLV-WH7 TGB2 protein, TGB3 protein, coat
DE   protein, and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   "Molecular identification and partial sequence analysis of Garlic latent
RT   virus isolates infecting Allium chinense";
RL   Unpublished.
XX
RN   [2]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Huazhong Agricultural University, College of Plant Science & Technology,
RL   No. 1, Shizishan Street, Hongshan District, Wuhan, Hu Bei 430070, China
XX
DR   MD5; 31d9218389e8557b9979a3f22d738432.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: clustal w v. 1.82; dnaman v. windows
CC   Sequencing Technology :: Pacific Biosciences
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium chinense"
FT                   /isolate="GLV-WH7"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wuhan, Hubei"
FT                   /collection_date="Apr-2007"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:K4N053"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:K4N053"
FT                   /protein_id="AFV36818.1"
FT                   /translation="MPLSPPPDHTKTFFAGAIGVCIALGLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIIYNSPARNFPSSSLLLNLLSPLFLIALIFGLICLSEKIKPSTSTRVT
FT                   CNCNHP"
FT   CDS             312..506
FT                   /codon_start=1
FT                   /product="TGB3 protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:K4N307"
FT                   /protein_id="AFV36819.1"
FT                   /translation="MQLQPPIALIIGLLATWLLCFGLESFKAEKCTVIITGESVKIIGC
FT                   EFTRDFIDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4N0Q2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:K4N0Q2"
FT                   /protein_id="AFV36820.1"
FT                   /translation="MANEIEELNNVQKLPTRDPETIPEHERSKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMSELTSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKVQALGAPEECLAEVFWDICMYCTAAGSSPNVNPKGT
FT                   IAVGGKVVTRDMVVAVIKEFSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIRPLEGLIRAPTDAERIAFATHKKLALTKNSQNSRYANTSAEVTG
FT                   GFFGCLPKTNLKENRC"
FT   CDS             1419..1715
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:K4NE02"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:K4NE02"
FT                   /protein_id="AFV36821.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVINIIVSKIVCNKVGASHY
FT                   AQARRAKSIGRCPRCFRCSPGFYFAKNCDSKTCFPGISYNAKVKDFIVDGVTM"
XX
SQ   Sequence 1808 BP; 523 A; 369 C; 405 G; 511 T; 0 other;
     atgcctctaa gccctccacc tgatcacaca aagactttct tcgctggtgc cattggagtc        60
     tgcatcgctc ttggattata tactttaaca cgctcaacgt tgccacacgt aggtgataac       120
     atacatagtt tgccgcacgg gggttgctat caagacggta cgaagaggat aatctacaac       180
     agccccgcaa ggaacttccc gagcagtagc ttactattga acctcttgtc acctctgttt       240
     ttaattgccc taatttttgg cctaatttgt ctgagtgaaa aaataaaacc gagtactagc       300
     acgcgtgtca catgcaattg caaccaccca tagctcttat catcggtctc ttagctacct       360
     ggcttctctg ttttggtctt gaaagtttta aagctgaaaa gtgtacagtc ataataaccg       420
     gtgaatcagt taaaattatt ggttgtgaat ttacgagaga tttcattgat ttcgccaagc       480
     aggctaaacc ttttggttca ctttaggtat acagcgctct aaattgatat catggctaac       540
     gaaatagaag aactcaataa cgtgcagaaa ttgccgacgc gtgatccgga aactatccct       600
     gaacatgagc gaagtaaagc agttaatgat gtcggtgtga tggaaagaga aggttttgaa       660
     gccgtgttac ggaggagtga aagcagattt aataagctta aggagaaatg tatgtcagag       720
     ttgaccagta ttaacgtcac caattgtggg tgggaatctg ggcgacccaa agcacaactt       780
     gctgatagtc tcaaagggga cgcttccaat atctttactc gcccttctat ggatgcactc       840
     ctggtccgaa attacgcacc cgaaagtaat aacatggcga ctgcggagga acttgccaag       900
     atctctgcca aagtacaggc tctcggagct ccagaggaat gtttggctga ggtattttgg       960
     gacatatgca tgtattgcac tgctgctggt agttccccga acgtgaatcc caaagggaca      1020
     attgctgtgg gcggtaaagt cgtgacaagg gatatggtcg ttgctgttat caaggagttt      1080
     tcaactttac gccaggtctg tcgttgttac gcacctgtgg tctggaatta tatgttgcta      1140
     aatgagcaac cacctgccaa ttgggacgca aaaggcttta ccgaaaatac caagtacgct      1200
     gcttttgaca cttttgacgc tgtaactaat aaggctgcga tccgaccatt agaaggcttg      1260
     attagggccc caactgacgc tgagcgtatt gcttttgcga cgcacaaaaa gttggcctta      1320
     accaagaact ctcaaaactc tcgctacgcc aacacttctg ctgaagttac tggagggttc      1380
     ttcgggtgtt tacctaaaac caatttaaaa gagaatcgat gttgatcaaa cagagaactt      1440
     atcgtagatt gttgcgtgct atatttaagt tgcatactaa taagaactgt gtggatgtaa      1500
     taaatattat cgtgagtaaa atagtgtgta ataaagtggg ggcctcacat tatgctcaag      1560
     ctcgtagagc aaagagcatt ggtagatgcc ctcgatgttt tcggtgctca cctggttttt      1620
     atttcgctaa aaactgtgac tccaaaactt gtttcccagg tattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactataaac cttggctagt      1740
     tgcccataaa acctaaataa tgcataagtg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//