ID   JX513405; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   JX513405;
XX
DT   28-OCT-2012 (Rel. 114, Created)
DT   28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Garlic latent virus isolate GLV-WH6 TGB2 protein, TGB3 protein, coat
DE   protein, and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   "Molecular identification and partial sequence analysis of Garlic latent
RT   virus isolates infecting Allium chinense";
RL   Unpublished.
XX
RN   [2]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Huazhong Agricultural University, College of Plant Science & Technology,
RL   No. 1, Shizishan Street, Hongshan District, Wuhan, Hu Bei 430070, China
XX
DR   MD5; 6db2ff4826582aad84034a68d5841ef5.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: clustal w v. 1.82; dnaman v. windows
CC   Sequencing Technology :: Pacific Biosciences
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium chinense"
FT                   /isolate="GLV-WH6"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wuhan, Hubei"
FT                   /collection_date="Apr-2007"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:K4N305"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:K4N305"
FT                   /protein_id="AFV36814.1"
FT                   /translation="MPLRPPPDHTKTFFAGAIGVCIALCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIVYNSPARNFPSSNLLLNFTSPLCLLALILGLIYLSEKFKPSSRSSDT
FT                   CSCNHS"
FT   CDS             312..506
FT                   /codon_start=1
FT                   /product="TGB3 protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:K4N0P8"
FT                   /protein_id="AFV36815.1"
FT                   /translation="MQLQPLIALFAGLLFTLLLCCCLENLKTEKCTVIITGESVRIIGC
FT                   EFTRDFIDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4NDY3"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:K4NDY3"
FT                   /protein_id="AFV36816.1"
FT                   /translation="MANEKEELANVQNLPRRDPETIPEHERSRAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMAELSSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNMATAEDLAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALNKNSQNSRYANTSAEITG
FT                   GFFGCFPKNNLRENRC"
FT   CDS             1419..1715
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:K4N2J3"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2J3"
FT                   /protein_id="AFV36817.1"
FT                   /translation="MLIKQRTYRRILRAIFKLHTNKNCVDVIDIIVSKIVCDRVGASKY
FT                   AQARRAKSIGRCPRCFRCSPGFYFTKNCDTKTCFPGISYNAKVKDFIVDGVTM"
XX
SQ   Sequence 1808 BP; 533 A; 389 C; 396 G; 490 T; 0 other;
     atgcctctaa ggcctccgcc tgaccatacc aaaacttttt tcgctggtgc tattggagtc        60
     tgcattgccc tttgcctgta cactttaact cgctccacgc tgccgcacgt cggggataat       120
     atacatagct tgccgcacgg tggttgctat caggacggta ctaaaaggat agtttacaat       180
     agtcctgcta gaaactttcc tagtagtaac ttactactta atttcacttc acctctttgc       240
     ttactcgccc tgatcctagg tctgatttac ttgagtgaga aatttaaacc cagctcgaga       300
     tcaagtgata catgcagttg caaccactca tagcactctt tgctggcctc ctgtttacat       360
     tgcttctttg ctgctgcctt gaaaatctca aaactgaaaa gtgcactgtc ataattactg       420
     gagagtccgt taggataatt gggtgtgaat tcacaaggga tttcatcgat ttcgcgaaac       480
     aagcaaaacc ttttggttca ctttaggtat acagcgctct aaattgatat tatggctaac       540
     gaaaaagaag aactcgctaa tgtgcagaat ttgccaaggc gtgatccaga aacaattcca       600
     gaacatgaac gaagcagagc agtcaatgac gtcggtgtta tggaacgaga aggttttgaa       660
     gcggtgctta gaagaagcga aagtaggttc aacaaactca aggagaaatg catggctgag       720
     ttgtctagta ttaatgtcac gaattgcggt tgggaatcag gaaggcccaa agcacaactc       780
     gcagatagcc ttaaagggga cgcctccaac attttcactc gtccctcaat ggacgctctc       840
     ttggtacgaa attacgcgcc tgaaagtaat aatatggcca cagctgagga tttggcaaaa       900
     atttctgcta aagtacaagc tcttggggcc cctgaggagt gtctggctga agtgttctgg       960
     gatatatgta tgtactgcac caccgctggg agctctccaa atgtgaaccc caaagggacc      1020
     atttccgtcg gaggtaaagt cgtgactaga gatatggtcg tcgcggtgat caaagaatac      1080
     tccacgttac gccaagtttg ccgctgttat gcgcccgtag tctggaacta catgttactg      1140
     aatgaacagc cacctgccaa ttgggatgcc aaaggattca ctgaaaacac taaatacgcc      1200
     gctttcgata ccttcgatgc cgtgacgaat aaagctgcta tacaaccgct tgaaggcctg      1260
     attagggcac ccactgacgc agagcgcatc gctttcgcga ctcataagaa attagctcta      1320
     aataaaaact ctcaaaactc tcgctatgca aacacttctg ctgaaattac cgggggcttc      1380
     tttggatgct ttcctaaaaa caatttgagg gaaaatcgat gttgatcaag cagagaactt      1440
     accgtagaat attgcgtgct atatttaaat tgcatacgaa taaaaattgt gtggatgtaa      1500
     tagacatcat agtgagtaaa atagtgtgcg atagggtggg ggcctcaaaa tacgctcaag      1560
     ctcgtagagc taagagtatt ggtagatgcc ctcgctgttt ccggtgttca cctggttttt      1620
     acttcactaa aaactgtgac accaaaactt gtttcccagg tattagctat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc tactataaac cctgactagt      1740
     tgcccataaa acctaaataa tgtataaatg ggaacgaata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//