ID   JX513404; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   JX513404;
XX
DT   28-OCT-2012 (Rel. 114, Created)
DT   28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Garlic latent virus isolate GLV-WH5 TGB2 protein, TGB3 protein, coat
DE   protein, and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   "Molecular identification and partial sequence analysis of Garlic latent
RT   virus isolates infecting Allium chinense";
RL   Unpublished.
XX
RN   [2]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Huazhong Agricultural University, College of Plant Science & Technology,
RL   No. 1, Shizishan Street, Hongshan District, Wuhan, Hu Bei 430070, China
XX
DR   MD5; 16a126b676d64d3718f30db6b6e591f8.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: clustal w v. 1.82; dnaman v. windows
CC   Sequencing Technology :: Pacific Biosciences
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium chinense"
FT                   /isolate="GLV-WH5"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wuhan, Hubei"
FT                   /collection_date="Apr-2007"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:K4N0P7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:K4N0P7"
FT                   /protein_id="AFV36810.1"
FT                   /translation="MPLSPPPDHTKTFFACAVGVCIALCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIIYNSPARKFPSSNLLSGLTTPLCFLALIIGLIYVSEKVKPSSSVRVA
FT                   CRCNHS"
FT   CDS             312..506
FT                   /codon_start=1
FT                   /product="TGB3 protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:K4NDZ5"
FT                   /protein_id="AFV36811.1"
FT                   /translation="MQVQPLLALSLGFLVTLFLCYCAENLKTEKCTVIITGESVKFLGC
FT                   EFTKEFIDFAKVAKPFGSL"
FT   CDS             532..1425
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4N2I9"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2I9"
FT                   /protein_id="AFV36812.1"
FT                   /translation="MAREEDTLSEVQKLPTRDPKTIPENERNKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMSELSSINVTNCGWESGRPKAQLADSLKGDASNIFTRPSMDALI
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEVFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALAKNSQNSRYANTSAEVTG
FT                   GFFGCFPKNNFRENRC"
FT   CDS             1419..1715
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:K4N048"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:K4N048"
FT                   /protein_id="AFV36813.1"
FT                   /translation="MLIKQRTYRRLLRAIFRLHTNKNCVDVINIIVSKITCESVGASSY
FT                   ARARRAKSKGRCPRCYRCSPGFYFTKNCDTKTCVPGISYNEKVKAFIVDGVTM"
XX
SQ   Sequence 1808 BP; 511 A; 372 C; 414 G; 511 T; 0 other;
     atgcctctaa gtcctccccc tgatcatact aaaactttct ttgcttgcgc tgtaggggtc        60
     tgcattgctc tttgcctata caccctgacc cgttcgactt tgcctcacgt tggggacaat       120
     atacatagtt tgccgcacgg tggttgttac caagacggta caaagagaat tatctacaac       180
     agtccagcgc ggaaatttcc tagtagtaat ctactctcag gtctaactac accactctgc       240
     tttttagctc tgataatagg actcatttac gtaagcgaaa aagttaaacc aagttcaagt       300
     gtaagggtcg catgcaggtg caaccactcc tagctctatc tctcggcttt ctagtgactt       360
     tgttcctttg ctattgtgcg gaaaatctca aaaccgagaa gtgtacggtc atcatcactg       420
     gagaatctgt gaagttcctt ggttgtgaat ttactaaaga gttcatagac tttgccaaag       480
     tagctaaacc atttggttca ctttaggttt acagcgcttg aaattgatat tatggctaga       540
     gaagaagaca cgctcagtga ggtgcagaaa ttacctactc gagatcccaa aaccattcca       600
     gagaatgaaa ggaataaagc agtgaatgac gtcggtgtta tggagcgtga aggctttgag       660
     gccgtgttgc gccggagtga aagcaggttc aacaaattga aggaaaagtg tatgtctgaa       720
     ttgtctagta taaatgtgac aaactgtggc tgggagtcgg gaagacccaa agcacaactt       780
     gctgatagtc taaaggggga tgcctccaac attttcactc gcccctctat ggacgctcta       840
     attgtaagga actatgctcc cgaaagtaat aatttagcga ccgccgagga attggccaag       900
     atttccgcca aagtgcaggc tctaggtgca cccgaagagt gcttagctga ggtcttctgg       960
     gatatctgca tgtactgcac gacagctggc agttccccaa acgtaaatcc taaggggact      1020
     atttctgtgg gcggtaaggt tgtcaccaga gatatggtgg ttgcagtcat taaagagtat      1080
     tcaacacttc gccaggtttg tcgttgttat gcacctgtgg tctggaatta catgttattg      1140
     aatgaacaac ctcccgccaa ttgggacgct aaggggttca ctgaaaatac caagtatgca      1200
     gctttcgaca cctttgatgc tgtaacaaat aaagcagcca tacaacctct tgagggccta      1260
     attagggctc ctactgatgc tgagagaatt gcattcgcta cgcacaagaa gttggcttta      1320
     gctaaaaact ctcagaactc tcgctatgca aatacatctg ctgaagtcac tggcggtttc      1380
     ttcgggtgtt ttcctaagaa caatttcaga gagaatcgat gttgatcaag caaaggactt      1440
     accgtagatt attgcgtgct atatttagat tgcatactaa taagaattgt gtggatgtta      1500
     taaacatcat agtaagtaaa ataacgtgtg agagtgttgg ggcttcttcc tatgcccggg      1560
     ctcgtagagc caagagtaaa ggtcggtgcc ctcgttgtta ccggtgctcg cccggttttt      1620
     actttaccaa gaattgtgac actaaaacct gtgttccagg tattagctat aatgaaaaag      1680
     tcaaggcatt tatagttgat ggtgtaacta tgtgaaaccc ttctataggc cttggaacgt      1740
     tgctcataaa acctaaataa tgcataagtg agaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//