ID   JX513403; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   JX513403;
XX
DT   28-OCT-2012 (Rel. 114, Created)
DT   28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Garlic latent virus isolate GLV-WH4 TGB2 protein, TGB3 protein, coat
DE   protein, and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   "Molecular identification and partial sequence analysis of Garlic latent
RT   virus isolates infecting Allium chinense";
RL   Unpublished.
XX
RN   [2]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Huazhong Agricultural University, College of Plant Science & Technology,
RL   No. 1, Shizishan Street, Hongshan District, Wuhan, Hu Bei 430070, China
XX
DR   MD5; b2e5d15ab9d9f8e47aa12673df085797.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: clustal w v. 1.82; dnaman v. windows
CC   Sequencing Technology :: Pacific Biosciences
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium chinense"
FT                   /isolate="GLV-WH4"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wuhan, Hubei"
FT                   /collection_date="Apr-2007"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:K4NDZ2"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:K4NDZ2"
FT                   /protein_id="AFV36806.1"
FT                   /translation="MPLSPPPDHTKTFFACAVGVCIALCLYTLTRSTLPHVGDNIHSLP
FT                   HGGCYQDGTKRIVYNSPARNFPSSNLLLNLSSPLLLITLIFGLICLSEKLKPSSSTRIT
FT                   CNCNHS"
FT   CDS             312..506
FT                   /codon_start=1
FT                   /product="TGB3 protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2I6"
FT                   /protein_id="AFV36807.1"
FT                   /translation="MQLQPLIALIIGLLATLLLCFSFENLKAERCTVIITGESVKIVGC
FT                   EFTKDFIDFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4N045"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:K4N045"
FT                   /protein_id="AFV36808.1"
FT                   /translation="MANEIEELNNVQKLPTRDPETIPEHERSKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCMSELTSVNVTNCGWESGRPKAQLADSLKGDASNILTRPSMDALL
FT                   VRNYAPESNNMATAEELAKISAKVQALGAPEECLAEVFWDICMYCTAAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRTPTDAERIAFATHKKLALTKNSQNSRYANTSAEVTG
FT                   GFFGCLPKNNLKENRC"
FT   CDS             1419..1715
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:K4N300"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:K4N300"
FT                   /protein_id="AFV36809.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTNKNCVDVINIIVSKIVCDKVGASHY
FT                   ARAGRAKSIGRCPRCFRCSPGFYFTKNCDTKTCFPGISYNAKVKDFIVDGVTM"
XX
SQ   Sequence 1808 BP; 517 A; 375 C; 404 G; 512 T; 0 other;
     atgcctctta gcccgccccc tgatcatact aaaactttct ttgcttgcgc tgtaggggtc        60
     tgcattgctc tttgcctata caccctgacc cgttcgactt tgcctcacgt tggggacaat       120
     atacatagtc taccgcacgg aggttgctac caagacggca cgaagagaat agtctacaac       180
     agtcccgcta ggaacttccc aagtagtaac ttgcttttga atctctcgtc acctctactc       240
     ctgattactc taatttttgg cctgatttgc ctaagcgaga aattgaaacc tagttcgagc       300
     acacgcatta catgcaattg caaccactca tagccctcat catcggtctc ttagctaccc       360
     tgttactctg ttttagcttt gaaaatttaa aagctgagag gtgtactgtc ataattaccg       420
     gtgaatcagt taaaattgtt ggttgtgaat tcacaaagga tttcattgac ttcgccaagc       480
     aggctaaacc ttttggttca ctttaggtat acagcgcttt aaattgatat tatggctaac       540
     gaaatagaag aactcaataa cgtgcagaaa ttgccgacac gtgaccctga gacgatccct       600
     gaacatgaac gaagtaaggc agttaatgac gttggtgtaa tggaaagaga aggttttgaa       660
     gctgtgctgc gaagaagtga aagtagattt aacaaactta aggaaaaatg tatgtcagag       720
     ttaactagcg tgaacgtcac caattgtggg tgggaatctg gtcgacccaa ggcacaactt       780
     gctgatagtc tcaaagggga tgcttctaat atcctcaccc gcccatctat ggatgcactc       840
     ctggttcgaa attatgcccc tgaaagtaat aatatggcga ctgctgagga actagctaag       900
     atctccgcca aagtacaggc tcttggagct ccagaggaat gtttagctga ggtattttgg       960
     gacatatgca tgtattgcac tgcagctggt agttccccga atgtgaatcc taaaggaaca      1020
     atttccgttg gcggcaaggt tgtgacgagg gacatggtcg tggccgttat caaagagtat      1080
     tcaactttgc gccaggtctg tcgttgctat gcgcctgtgg tatggaacta tatgttgtta      1140
     aatgaacaac cacctgcaaa ttgggatgcg aaaggcttta ccgaaaatac caagtacgcc      1200
     gccttcgaca cttttgacgc tgtaactaat aaggctgcga tccagccact tgaaggtctg      1260
     attaggactc cgactgatgc tgaacggatt gctttcgcga cacacaaaaa gttggcctta      1320
     accaaaaact ctcaaaattc tcgctatgcc aatacttctg ctgaggttac tggaggcttc      1380
     tttgggtgct tacctaaaaa caatttaaag gagaatcgat gttgatcaag cagagaacct      1440
     accgtagatt gttgcgtgct atatttaagt tgcatacgaa taagaactgt gtggatgtaa      1500
     taaatattat agtgagtaaa atagtgtgtg ataaagtggg ggcctcgcat tatgctcgag      1560
     ctggtagagc aaagagcatc ggtcgttgcc ctcgctgttt tcggtgttca ccaggttttt      1620
     acttcactaa aaactgtgac accaaaactt gtttcccagg tattagttat aatgcaaaag      1680
     tcaaggactt tatagttgat ggtgtaacaa tgtgaaaccc ttctatagac cttggctagt      1740
     tgcccataaa acctaaataa tgtataaggg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//