ID   JX513402; SV 1; linear; genomic RNA; STD; VRL; 1808 BP.
XX
AC   JX513402;
XX
DT   28-OCT-2012 (Rel. 114, Created)
DT   28-OCT-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Garlic latent virus isolate GLV-WH3 TGB2 protein, TGB3 protein, coat
DE   protein, and nucleic acid binding protein genes, complete cds.
XX
KW   .
XX
OS   Garlic latent virus
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus.
XX
RN   [1]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   "Molecular identification and partial sequence analysis of Garlic latent
RT   virus isolates infecting Allium chinense";
RL   Unpublished.
XX
RN   [2]
RP   1-1808
RA   Wu C.C., Hong N., Liu Y., Xu W.X., Wang G.P.;
RT   ;
RL   Submitted (18-AUG-2012) to the INSDC.
RL   Huazhong Agricultural University, College of Plant Science & Technology,
RL   No. 1, Shizishan Street, Hongshan District, Wuhan, Hu Bei 430070, China
XX
DR   MD5; 922a8ac4638346a7f2bc19021eaa82e2.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: clustal w v. 1.82; dnaman v. windows
CC   Sequencing Technology :: Pacific Biosciences
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1808
FT                   /organism="Garlic latent virus"
FT                   /host="Allium chinense"
FT                   /isolate="GLV-WH3"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Wuhan, Hubei"
FT                   /collection_date="Apr-2007"
FT                   /clone="p7-5"
FT                   /db_xref="taxon:12458"
FT   CDS             1..333
FT                   /codon_start=1
FT                   /product="TGB2 protein"
FT                   /db_xref="GOA:K4N2I2"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2I2"
FT                   /protein_id="AFV36802.1"
FT                   /translation="MPLSPPPDHTKTFFASVVGICIALCLYTLTRSTLPHVGDNLHSLP
FT                   HGGCYQDGTKRIFYNSPARKFPSSNLLSGLTAPLCLLTFIIGLICISEKIKPSSNARIT
FT                   CRCNHS"
FT   CDS             312..506
FT                   /codon_start=1
FT                   /product="TGB3 protein"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:K4N041"
FT                   /protein_id="AFV36803.1"
FT                   /translation="MQVQPLLILLLSLVLTLLFCYCFEGLHNNKCAVIITGESVKIIGC
FT                   EFTKDFIEFAKQAKPFGSL"
FT   CDS             532..1425
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:K4N2X9"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="InterPro:IPR013569"
FT                   /db_xref="UniProtKB/TrEMBL:K4N2X9"
FT                   /protein_id="AFV36804.1"
FT                   /translation="MAREEETLSGVQNLPTRDPNSIPENERGKAVNDVGVMEREGFEAV
FT                   LRRSESRFNKLKEKCLAELSSINVTNCGWESGRPKAQLADNLKGDASNIFTRPSMDALL
FT                   VRNYAPESNNLATAEELAKISAKVQALGAPEECLAEIFWDICMYCTTAGSSPNVNPKGT
FT                   ISVGGKVVTRDMVVAVIKEYSTLRQVCRCYAPVVWNYMLLNEQPPANWDAKGFTENTKY
FT                   AAFDTFDAVTNKAAIQPLEGLIRAPTDAERIAFATHKKLALTKNSQNSRYANTSAEVTG
FT                   GFFGCQPKNNFRENRC"
FT   CDS             1419..1715
FT                   /codon_start=1
FT                   /product="nucleic acid binding protein"
FT                   /db_xref="GOA:K4N0P3"
FT                   /db_xref="InterPro:IPR002568"
FT                   /db_xref="UniProtKB/TrEMBL:K4N0P3"
FT                   /protein_id="AFV36805.1"
FT                   /translation="MLIKQRTYRRLLRAIFKLHTDKNCVDVINIIVSKIINGSAGASSY
FT                   AQARRAKSIGRCPRCYRCAPGFYFTKKCDTKTCFPGISYNEKVKAFIVDGVTM"
FT   3'UTR           1716..1808
XX
SQ   Sequence 1808 BP; 526 A; 377 C; 408 G; 497 T; 0 other;
     atgccactta gcccgccgcc tgatcacaca aagactttct ttgccagtgt agtagggatt        60
     tgcatcgcac tctgtctgta tacgttaact cgttcgactt tacctcacgt aggtgataat       120
     cttcactcct tacctcacgg tggttgttac caagacggta ccaaaaggat tttctacaat       180
     agccctgctc gaaagttccc gagtagtaat ctactgtcag gtttgacagc accactctgt       240
     ttgctaacct tcattattgg gctaatctgc attagcgaga agataaaacc tagttcgaac       300
     gcgagaatta catgcaggtg caaccactct tgatcctgtt gctcagtcta gtcttgactt       360
     tgctcttctg ttactgcttc gagggcttac ataacaataa gtgcgcggtc atcattactg       420
     gtgaatcagt taaaattata gggtgcgaat ttactaaaga tttcattgag tttgctaaac       480
     aagcaaaacc cttcggttca ctttaggttc acagcgtttg agattgatat tatggctaga       540
     gaagaagaaa cacttagtgg ggtgcagaac ttgcccactc gagatccaaa ctccatccca       600
     gaaaatgagc gtggtaaagc agttaatgat gttggcgtca tggaacgtga aggttttgag       660
     gcggtgctca gaagaagtga aagtaggttc aacaagctaa aggaaaaatg tttagctgag       720
     ttgtcgagta taaacgttac taattgtggt tgggagtcgg ggagacccaa agcacaactt       780
     gcggacaacc taaagggcga cgcttcgaac attttcactc gaccttccat ggatgctctc       840
     cttgtacgca attacgcacc tgagagtaat aatttagcca ctgcggagga attagccaag       900
     atttccgcaa aggtgcaggc cctgggtgct cccgaagaat gcttagctga gatcttttgg       960
     gacatatgca tgtattgcac cacagccggc agctctccca atgtcaatcc taaggggacc      1020
     atatcagtgg gcggcaaagt cgttaccaga gacatggtgg tagctgttat caaggaatac      1080
     tcgaccttgc gccaagtgtg ccgttgctat gcaccagtcg tctggaatta catgttacta      1140
     aatgaacagc cgcctgccaa ctgggatgct aaaggtttca ctgaaaatac aaaatatgct      1200
     gcatttgaca catttgatgc agtgaccaac aaagctgcga tccagccact tgaggggcta      1260
     attcgagctc ctactgatgc tgaaaggata gcctttgcca cacataagaa gttggctctg      1320
     actaaaaatt cacagaactc tcgctatgct aatacatcag ctgaggtcac tggtggtttc      1380
     ttcggatgtc agcctaaaaa caatttcaga gagaatcgat gttgatcaag caaagaacgt      1440
     accgtagatt gttgcgtgct atatttaaat tacatactga taagaattgt gtggatgtta      1500
     taaacatcat cgtgagtaaa ataataaatg gtagtgcggg tgcttcatcc tatgctcaag      1560
     ctcgtagagc aaaaagtata ggccggtgtc cacgctgcta caggtgtgct ccaggttttt      1620
     actttactaa aaagtgtgac actaaaacat gtttcccagg cattagctat aatgaaaaag      1680
     tcaaggcgtt tatagttgat ggtgtaacaa tgtgaaaccc tactgtaagc cttgaaatgt      1740
     tgcccataaa acctaaataa tgcataagtg ggaacgtata aaataatttg tttttaaaat      1800
     attttcgc                                                               1808
//